mRNA_S-firma_F_contig10480.676.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10480.676.1
Unique NamemRNA_S-firma_F_contig10480.676.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A7S2RIG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIG3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.620e-64
Identity = 215/635 (33.86%), Postives = 295/635 (46.46%), Query Frame = 1
Query:    1 MAGRDGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDG--------------GKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGP--RAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGATL-----PTRTPRGMLGAFAVERRGAGDSFHIMASCMHAGGALL----------LDAR---------------RGMELSPIAADVSA----VHRIGFDDHQPVAGAAEGA--CAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDGPATPNVRPGRGGVRQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRRRKARERLATL-RARQQAGVAGAALLYNDPADEDSDGGSVADRAEYDDDFEIQG-------TPFGMPEAAA--PFIATV---------GDRTPLPLTLSALESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLS---QLDGAHWLTHTPHN-----FHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVLRSTER 1668
            M   +GRF+HLLQPIRD+A NWDIDVAS LEEYL +LE L I+                 GK ++NFAEAALLIQGS LIYSKKVE L+ L+   LQT+++ + +++++G+      +    ++ +  E   EFL LDDV++E  +ID++     +T      P R P  M+ A   E RG+  +F + +  +HA GALL          LDA                +G   SP   D  +    V   GFDD+ P   A E A       S     + L F                 GPAT  V         A + DPW   D H  +   AKPLK G+TY         A     K        ++       EFQY +  +RRR   ER  +  R      V GAA    + A    +  +  D  +++DD E  G       T F   E  A  P  A           GD  P+ L   A   +  SY  L + HI  F++G D+YA ET LS+RV++W+ R++P+L EQ  R AFDI  YG ++I +L+    L         P N     F+ +V  +  F+VCR+FLA LQL N+GNV L H    V  ++  LK+ + STER
Sbjct:   10 MDKEEGRFAHLLQPIRDIAVNWDIDVASALEEYLEDLESLTITLGDELQEAVTDPVPGQEGKASVNFAEAALLIQGSALIYSKKVEYLHSLV---LQTLEILSSQKADKGKHKQQLEKDILADENEFREPGSEFLLLDDVIKEGKDIDMDHGNRRSTTAAIEHPGRAPAPMMTALLREDRGS--AFRMNSCHVHASGALLIGSGGAVTPELDALVSPASLAPGRPHAVPQGAAWSPGGVDEDSFEGHVDGGGFDDYDPTEAAEEPAPLTPRPASFASGTSSLLFSTAVV------------GPATSPV--------PAAKSDPWAMHDAHDPSKTVAKPLKKGKTYRLPDSLSNKASRDAPKRSNAKDKGLRLQGLLCSEFQYLITRERRRALAERRGSAARTHAPMAVFGAAADEEEAASSPINFHAYDDGIDFEDDAEDAGGFDHGFETDFAGDEGDAHDPTAADAASGLEEGYGGDMAPIALD-DAFRVAPKSYADLCQAHITAFLKGADQYAHETQLSRRVSEWQSRLEPVLAEQTQRRAFDIHLYGEEIIHDLATAGSLKVKSGKKGAPSNDKVIPFNSIVADKPHFEVCRMFLASLQLCNNGNVRLHHTDGVVCGMDD-LKVEVLSTER 617          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A8J9RTY5_9CHLO (Condensin-2 complex subunit H2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RTY5_9CHLO)

HSP 1 Score: 219 bits (557), Expect = 1.400e-59
Identity = 208/613 (33.93%), Postives = 275/613 (44.86%), Query Frame = 1
Query:   19 RFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGATLPTRTP-RGMLGAFAVERRGAGDS------FHIMASCMHAGGALLLDARRG------MELSPIAADVSAVHRIGFDDHQPVAGAAEGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMG------------------DGPATPNVRPGRGGVRQAPR--VDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRRRKARERLATLRARQQAG------VAGAALLYNDPADEDSDGG-SVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESS---------------AVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTH--------TPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVLRSTER 1668
            RF+HLLQPIRDLAANWDI++A+ELEEYL  LE +  SFDGG + LNFAEAALLIQGS  +YSKKVE L+ L+Y+ L  +     KR + G GG  +    +D    E EE FL LDD+LQE   IDLE   DG   P   P +      A+E  G G+S      + I    +H  GALLL+A  G      M L          H +G D          G     G PI  Q+  D  D +        G M                   +G    +VR  R  ++ A R   DP+  LD H A   P KP K  +  +  +     A    A A PQP    +     + EF+Y ++A   R A E+ A LR  ++ G        G+A      A +  DG  ++ + AEY+  F+  G   G     APF    GD     L  +A E                   SYE   R HI+  M    +   +T L+ RVA WR ++ P+L+EQD R  FDI  YG  V+ +L+++  A              P  F  V      + V R+F A LQLAN+GNV L+  +        P  L L S +R
Sbjct:   13 RFTHLLQPIRDLAANWDINIANELEEYLGVLEQITFSFDGGPS-LNFAEAALLIQGSACVYSKKVEHLHSLVYQALNFIGE---KRKQSGGGGQKQV---DDVVEFEDEEAFLNLDDILQEGTGIDLE---DGNAAPRELPIKAPTVVLALEDSGHGESDGGAGSYRIATCSVHKSGALLLEAHDGDLMDEQMRLCDAVGPTHLRHLLGEDLQSHAEEETAGPSGAEGEPI-EQDIYDGGDGFAGDDDDDGGAMQPLEPAESMPAHGAEPPWLEGADEGHVRQARSRLQPAHRELFDPYAPLDHHDAGSMPQKPFKKMKPRSRRRAPKVKAPAVDAFAPPQPSAPSQLT---FPEFEYVLRA---RAALEQ-AQLRGSRKRGEHLWRDAQGSAEEQQLSAFQPEDGEQALPEEAEYEGGFDDNGDDDGF-GVEAPFDDAGGDMDMTALAQAAAEGGFPAGVGAWQFIDQDGEPSYEDRCRMHIETLMAAAAEAEVQTGLAARVASWRDKLAPVLEEQDARGDFDIHAYGEVVLEDLAKMSLADPSNPEELRLGKVAPVTFERVAHREHKWQVSRLFSALLQLANNGNVILLRGSDP----SQPFSLRLASLDR 602          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: UPI00138FB64E (condensin-2 complex subunit H2 isoform X2 n=5 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FB64E)

HSP 1 Score: 212 bits (540), Expect = 2.520e-57
Identity = 202/634 (31.86%), Postives = 295/634 (46.53%), Query Frame = 1
Query:   19 RFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGPRAPTGEDADI-LEQEEEFLELDDVLQEADNIDLEEEED---GATLPTRTPRGMLGAFAVERR-----------GAGDSFHIMASCMHAGGALLLDARRGMELS------PIAADVSAVHRIGFDDHQPVAG--AAEGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDGPA-------TPNVR--------PGRGGVRQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAH-------------YH-----------------EFQYAVKADRRR------KARERLATLRARQQAGVAGAA---LLYNDPADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESSAVS-YEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVLRSTERRRGVEA 1686
            R+SHLLQPIRD+  NWDIDVA++LEEYL E+E + ISFDGGKT++NFAEAALLIQGS  IYSKKVE LY L+Y+TL  +  +  KR ++          G+D D   ++E++FL LDD+ +EA NIDL+E+ D    + L  RTP  ++     ER+           G+ + F +   C+H  GAL+LD      L       P +    A+ +    D +PV        + A   S IG  +    DDD G+      G   +  A        P  R        P    + +A   DPW  LDPHA      KP + GR +            GMAK   +     +A  +H             +H                 EF+Y    + RR      K ++ LA     +Q     A    +  N+P  +D D G +    + DD+ E  G  F  P        T+ +  P+ L  +A +   VS YE L+R +++ ++    +YA ET+LSKRV  W  ++ P L+E++    FDI  YG DV+ +   +         P  F  +++ ++ F++CR FLA LQLAN+ NVE+         V+T    +L  T    G+ +
Sbjct:   16 RYSHLLQPIRDMTKNWDIDVATQLEEYLQEIEKIQISFDGGKTSMNFAEAALLIQGSACIYSKKVEYLYTLVYQTLDLIASK--KRLQQAASVDEN---GQDKDTTFKEEDDFLSLDDI-KEAKNIDLKEDIDCLAESPLIPRTPLALIPLGEKERQDVLLSQTGEVLGSRNDFKMNTCCIHKSGALILDLAHLSLLDNSFSRLPTSTPQQAMAKETITDPKPVLEEQVVTDSQAQDISMIGPGDNHYDDDDDGNGCEDLAGDAIEEHAYDEQAEDVPEERMQLRQKHAPAVAALSKATSRDPWELLDPHAPKSNDEKPFRKGRPFKLPPSI-----LGMAKETKRKRKRTEANPSHPVLIPIHEFCAMAFHSHSSKFPKNPLKAPAMKEFEYLFWVEYRRRQELDKKQKKILAQYLTEEQFDELNAPDPEIDENEPFPQD-DYGDIGSNDQDDDEDEAGG--FCDPRHDDE--QTIVNIPPMALEEAAADVLVVSSYEDLVRKYVEGYLMEAQQYAQETDLSKRVRTWENKILPTLEEEEKHAPFDIHKYGEDVLHSFQDIFSIAEERVKP--FAEIMKSKEPFEICRYFLATLQLANNYNVEISVAGMADKGVDTMSLKLLHMTPGHAGISS 631          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A5J4Y9G7_9CHLO (Condensin-2 complex subunit H2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9G7_9CHLO)

HSP 1 Score: 211 bits (538), Expect = 5.910e-57
Identity = 202/613 (32.95%), Postives = 287/613 (46.82%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGAT-LPTRTPRGMLGAFAVERRGAGD----SFHIMASCMHAGGALLLDARRGMELSP--IAADVSAVHRIGFDDHQ--PV----------AGAAEGACAGAGSPIGNQNRLDFDD--DY--GDXXXXXXGGMGDGP-------ATPNVRPGRGGVRQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLK-----DAGAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRRRKARERLA------TLRARQQAGVAGAALLYNDPA--------DEDSDGGSVA----DRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSAL-ESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQL---DGAHWLTHT-----PHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVLRSTE 1665
            D +F+HLLQPIRDLAANWDI++A+ELE+Y+  LE +  SF+GG  NLNFAEAALLIQGS  +Y KKVE L+ L+Y+ L+ +  +  +R+ +G      A    D D L+ EE+FL LDDVL+E   ID+++    A     R P  +L   +      GD    ++ I +  MH  GALLL+AR G  L       +++A   +   D Q  P+           G AEG     G         D DD  DY   +       GM D P       +                 DP+  LDPH     P KP K GR  T  K     D   +   G        +PA   +   + EF YA+K  +  +  +RLA      T R  ++A + G+A    + A        +ED  GG V+    DR         Q +   + E A   +A  GDR        A  ++ ++SYE L + HI+ F++       +T L+ RV++WR ++ PLL EQD RPAFDI  YG  V+  L++L   D  H +        P  F  V       +V R+F A LQL N+GN++++   +     + P +L L  TE
Sbjct:    6 DNKFAHLLQPIRDLAANWDINIANELEDYMDVLESVTFSFEGGP-NLNFAEAALLIQGSACVYGKKVEYLHTLVYQALEFIA-EKKRRASKGLSSQQAA----DTDDLDDEEQFLNLDDVLEEGTAIDMDQTSTTAIPAAVRPPAVLLALESTSSATGGDGDAGNYRIASCSMHHSGALLLEARDGEFLDEQLCYTNIAATTHLQQPDQQVRPMPEDASHDAMDTGNAEGYDGAEGCSHDFDGCGDGDDGVDYMQQEAAHLDHAGMPDQPQHFLQSSSXXXXXXXXXXXXXXXEFDPYAPLDPHVEGTLPIKPFKKGRKPTRRKRPKQADCQDVDALGCTLGT---IPAPTVSGCTFAEFNYALKLLQSSQQAQRLAAVRQMATTRGHKEAQL-GSAFTREEAAAGCADLDDEEDCAGGYVSGGMSDRGSEPGHNFPQDSMAELDEWAE--LAGAGDRAFASNGPPADGDADSMSYEELCQAHIEAFIQAAAAAEVQTELASRVSNWRYKIQPLLDEQDARPAFDIHLYGDQVLDKLARLSCRDPDHPVELQTSMVEPVGFEAVAGEESQAEVSRLFSAMLQLINNGNIQILPGQA-----QQPFQLRLLKTE 601          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: D7FKX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX7_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 7.710e-57
Identity = 215/702 (30.63%), Postives = 298/702 (42.45%), Query Frame = 1
Query:   10 RDGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMK------RSERGRGGGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEED-----------------------------------GATLPTRTPRGMLGAFAVERRGAGDSFHIMASC--MHAGGALLLD---------ARRGMELSPIAADVSAVHRIGFDDHQPVAGAAEGA-CAGAGSPIGNQN--------RLDFDDDYG---DXXXXXXGGMGDGPATPNVR-PGRGGVRQ-------------APRVDPWVSLDPHAAAGAPAKPLKVGRTYT----TLKDAGAIARYGMAKAVPQP---------------LPAVKAANAHYHEFQYAVKADRRRKARERLATLRARQQA-GVAGAALLYNDPADEDS----------------------DGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLS-ALESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLS------QLDGAHWLTHTPH---------------------------NFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVL 1653
            R+ RF H+LQPIRDLA NWD+D+A+ LE+YL +LE + I+ DGG + +NFAEAALLIQGST +YS+KVE +Y L+ +T+  +  Q         +S+ G G       G+D+ +   E  FL LDD++ E  +ID+                                        G  +P  T   M   F +E+   G+SF  M++C      G LL++         A+   E S  A        +G +    +   A+G    G+G  +G  +           FD D+G   D          DGP TP     GR  +RQ             AP +DPW +LDPH    + A+P++ GRTY       K  G     G AK   +                + +V      Y EFQY    +R+RKA +   T  ARQQA G  G      + A  DS                       GG  AD  +  D                       D    P++L  A  +   +YE L R+HI+ FMRG +KYA ET LSKRV  W+ +++PL++ Q+ R AFDI  YG  V+S ++      Q   AH      H                           +F  VV G++ FDVCR+FLA LQLAN+GNV L H  +  D   TP +L L
Sbjct:  113 REERFKHILQPIRDLAQNWDVDIATSLEDYLEDLEHITITLDGGASKVNFAEAALLIQGSTCVYSRKVEHVYQLVQRTIDFLTQQKQXXXXXAAKSKSGDGD-----VGDDSIMGGDETAFLPLDDIILEGKHIDIGSTSSRSRNRRRSSIAPSSGFHGRGXXXXXXXXXXXXLPGGGDVPDITRPPM---FLMEQD-YGNSFK-MSTCAPQQLSGTLLIEGGALDDSLFAQGDAETSEAARACDFWRGLGREGDGGLKARADGERWTGSGMDMGGGDDXXXXXXXXXXFDGDFGPGDDFDDPRDDVPVDGPRTPEGSVSGRRELRQRESIEKEVLKADKAP-IDPWAALDPHDPGTSQARPIRKGRTYKIPAQVRKRRGGKKIQGEAKGGGEEQKGDGGSWVGRDGRVMLSVPLLGLAYPEFQYVWNRERQRKAAQ---TRLARQQARGFMGREDFLPESAPPDSAGMNDVGTDYDGYGSDGSYCSDGGGGYADYGDQSDGGXXXXXXXXXXXXXXXXXXXXXDAGVAPISLEDAFRNKPQTYEDLCRNHIEAFMRGTEKYAHETQLSKRVGAWQEKLEPLMESQEKRQAFDIHAYGQSVLSRVASVLTPAQRARAHTAAKGVHPKVADDAAASPEEAVQADTAEPDVPLVDFGTVVAGKERFDVCRLFLASLQLANNGNVRLFHGDNAADQETTPFRLEL 800          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A1Y1IAI4_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAI4_KLENI)

HSP 1 Score: 204 bits (518), Expect = 7.670e-53
Identity = 193/598 (32.27%), Postives = 262/598 (43.81%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGPRAPTGEDADILEQEEE--FLELDDVLQEADNIDLEEEEDGA----TLPTRTPRGMLGAFAVERRGAGD---------SFHIMASCMHAGGALLLDARRGM----ELSPIA--ADVSAVHRIGFDDHQPVAGAAEGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDGPATPNVR-------PGRGGV--------------------RQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRRRKARERLATLRARQQAGVAGAALLYNDPADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAA-----PFIAT-VGDRTPLPLTLSALESSAV--------SYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDG-------AHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVEL 1599
            + RF HLLQPIRDLA NW+ID+A+EL +YL ELE +  SFDGG + LNFAEAAL+IQGS  IYSKKVE LY L+Y+ L  +  +  KR+E    G     +G      E+EEE  FL LDD+  E   IDL+E  D      T  TR P   L A   ER G G          ++ I +  +H+ GALLLD R G     +L PI+  A   ++H  G+         A+ A    G      +  D D+D+G       G  GD P             PG+ G                     +Q   ++PW  LDPH    A  +P K GR     +     A+   A     P     A    + EF  A +A        RL   R  ++ G    A    D A      G   +     DD+                   P  A  +GD    P    A +S AV        +YE L+R HID  ++       +T+L+ RVA W+ +++P+L+EQD RP FDI  YG  V+   +   G       A         F  VV+G+   ++ R+F A LQL N+GN+ +
Sbjct:   14 ESRFIHLLQPIRDLAGNWNIDIAAELSDYLEELESITFSFDGGHSTLNFAEAALVIQGSACIYSKKVESLYGLVYQALDVIAKK--KRAEEA--GADLEASGNAIQDEEEEEEARFLLLDDIP-EGTGIDLDEVADEENPIFTAATRGPPAALLAMEDERMGPGGPGNMGGEAAAYKINSCTVHSSGALLLDPRDGDLLDDQLMPISFRASPPSLHPEGWSP-------AKTAPQNGGVDEATDHMDDDDNDFGGGGDNWDGPTGDPPGQEEAALGVADPAPGQAGAVDPGMQTRGAMQHGAPVQAEQQEEEINPWKQLDPHDPGTAVVRPYKRGRPVRRPQ-----AKRSAAVPAKAPYALAPARGVFFPEFAAAFQA--------RLRAERVSRREGAGNRATYRGDFAAFGEVAGEQENVLGSGDDWHAAXXXXXXXXXXXXXDYEPVDAIEMGDGGDRPFYFGA-DSGAVGPPGEAEKTYEDLVREHIDAMLKAAAAAEVQTDLAARVATWKHKIEPVLQEQDARPEFDIHLYGARVLDAATATAGPPSEDERALTSAEVVVPFTEVVKGQPKHEISRLFAAMLQLINNGNLSV 585          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A2K6EKE9_PROCO (Condensin-2 complex subunit H2 n=11 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6EKE9_PROCO)

HSP 1 Score: 197 bits (502), Expect = 3.490e-52
Identity = 202/641 (31.51%), Postives = 280/641 (43.68%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTV----QMQTMKRSERGRGGGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEE---DGATLPTRTPRGMLGAFAVERRG------------AGDSFHIMASCMHAGGALLL---------------------DARRGME-LSPIAADVSAVHRIGFDDHQPVAGAAEGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDGPATPN---------------VRPGRGGV-----RQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIA-----RYGMAKAVPQPLPAVKAANAHYHEFQ---YAVKADRRRK-----------------ARERLATLRARQQAGVAGAALLYNDPADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVET-PLKLVLRSTERRR 1674
            + RF+HLLQPIRDL  NW++DVA++L EYL EL+ + ISFD GKT +NF EAALLIQGS  +YSKKVE LY L+Y+ L  +    + + +   +  R  G  A +G     LE E+EFL LDD      N+DL+ ++   +  T+P   P  ++    +E+              +   F +     H  GA +L                     DA R  E L  ++A  S V  +GF  H+P      G       P G       D+D  +            P  P                +   RGG      R     DPW SLDP  +  +  KP K GR Y+      A       R G AK               +H++    YA  ADRRR                   RE+L TLR  Q+  +    L    P++ED    S+ D     DDF ++      PE A P  +   D   +P +LS        YE L+R ++++F+    K+  ET LS+RV +W   + PLL+EQ+    FDI TYG  V+S   QL+   W       F  +V G+ +F+VCR  LA LQLAND  VE+        AV+T  L+L+      RR
Sbjct:    5 EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSAVQEDRANGD-ASSGAS---LEAEDEFLSLDDFPDSRANVDLKNDQAPSEVLTVPL-LPMALVAPDEMEKNNFPLYSRQGEVLASRKDFRMNTCTPHPRGAFMLEPVGTSSVEPVGMSPMPRSQQDAERAEEQLMEVSACGSPVPMLGFS-HEP------GTSPEGPMPSGRGE----DEDAEEAGELPEATAPQAPLEPEEPRSLQQSAALPRRYLLRERGGAPEPVSRLKETPDPWQSLDPFDSLDS--KPFKKGRPYSVPPCVEAAPGQKRKRKGAAKLQD------------FHQWYLAAYADHADRRRPRQKGPSFADMEVLYWEHVREQLKTLRKLQRREMGKQWLR---PSEEDRLEDSLEDLGAAADDF-LEPEECVEPEGANPRESAALDAEAMPASLS--------YEELVRRNVELFIATSQKFVQETELSQRVREWEDTVRPLLQEQEQHLPFDIHTYGDQVVSQFPQLN--EWCP-----FAKLVAGQPAFEVCRSMLASLQLANDYTVEIAQQPGLETAVDTMSLRLLTHQRAHRR 596          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: A0A1S3W6U5_ERIEU (Condensin-2 complex subunit H2 n=5 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3W6U5_ERIEU)

HSP 1 Score: 197 bits (501), Expect = 4.900e-52
Identity = 196/637 (30.77%), Postives = 286/637 (44.90%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTV-------QMQTMKRSERGRGGGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGATLPTRT------PRGMLGAFAVERRGAGDSFHIMASCM-----------------HAGGALLLDARRGMELSPIAADVSAVHR-IGFDDHQPV-----AGAA---------EGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDG-PATPN---VRPGRGGVRQAPRV-----------DPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAH-YHEFQYAVKADRRRK-----------------ARERLATLRARQQAGVAGAALLYND----PADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVET-PLKLVLRSTERRR 1674
            + RF+HLLQPIRDL  NW++DVA++L EYL EL+ + ISFD GKT +NF EAALLIQGS  +YSKKVE LY L+Y+ L  +       Q+ + +  E       R P        E E+EFL LD++     ++DL      + +P+        P  ++    +E+     S H + SC                  H  GA +L+    + +SP+   +    +  G  + QP+     AG A         E   A   SP G   R + DD   D        +G   P++P     +P +  +R+   V           DPW +LDP  +  +  KP K G+ Y+      A  +    K       A K  + H ++   Y+  AD RR                   RE+L TLR  Q+  +A       +    P +ED    S+ D     DDF         PE  A      G R   P+ L+     ++SYE L+R ++++F+    K+  ET LS+R+ DW   + PLL+EQ+    FDI TYG  V+S  SQL+   W     + F  +V G+ +F+VCR  LA LQLAND  VE+        AV+T  L+L+      +R
Sbjct:    5 EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKKRAKQLSSAQEDEANWATNSRPPQ-------EVEDEFLSLDELPDTRASVDLR----SSQVPSEVLIIPLLPMALVAPDELEK-----SSHPLYSCQGEVLASRKDFRMNTCTPHPRGAFMLEP---VGMSPVETLLPKNQKEAGRTEEQPMEVSLCAGPAPMLSNCPEQEPEQAADPSPEGPLPRGEDDDVEEDMAEPFEAPVGPPEPSSPQQSAAQPRKYMLRERQEVLDHASRVKETSDPWQNLDPFDSLDS--KPFKKGKPYSVPPSVEATGQKRKRKG------ATKLQDFHQWYLAAYSDHADSRRPRQKGPSFADMEVLYWKHVREQLETLRKLQRREMAEEQWPRAEEGLWPEEEDHQDDSLEDLGVAADDFL-------EPEGCA---EPEGARLEEPVDLAEDMPKSLSYEELVRKNVELFITSSQKFVQETELSQRIRDWEDTIQPLLQEQEEHVPFDIHTYGDQVVSKFSQLN--QW-----YRFSDLVAGQPAFEVCRAMLATLQLANDHTVEITQQPGLEAAVDTMSLRLLTHQRAHKR 597          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: UPI0014029170 (condensin-2 complex subunit H2 isoform X2 n=3 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014029170)

HSP 1 Score: 196 bits (497), Expect = 1.790e-51
Identity = 190/607 (31.30%), Postives = 285/607 (46.95%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRG-GGPRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGATLPT---RTPRGMLGAFAVERR------------GAGDSFHIMASCMHAGGALLLDARRGMELSPI-AADVSAVH-RIGFDD-HQPVAGAAEGACAGAGSPIGNQNRLDFDDDYGDXXXXXXGGMGDGPATPNVRPGRGGVRQAPR--------------------VDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDAGAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRR------------RKARERLATLRARQQAGVA--GAAL--LYNDPADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESSAVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLVLRSTER 1668
            + RF+HLLQPIR+L  NW+IDVAS+LEEYL EL+ + ISFD GKT +NFAEAA+LIQGS  IYS+KVE LY L+Y+ L  +  +  KR+++    G   A      D  + E EFL LDD+     N    + + G+T+      TP  ++ +  +E++            G+   F +     HA GA +L+      ++ +   + +A H + G  D  Q +    E +  GA  P+ + +    DDD GD        + +            GV +A R                    +DPW SLDP AA     KP K GR +        I      K   +     K   A Y+  Q  VK+ R+            +  +ERL   R  QQ  +A  G  +  L  +  D + +   + D+AE  D  + +G    + +     I    + +P+ L L   ES  VSYE L+R ++++F+    +YA ET LS RV DW  ++ P L +++ R AF I  YG  ++  L  +           +F  +V G++SF+VCR  LA LQLAND  VE+       ++V+T ++L L S  R
Sbjct:    5 ESRFAHLLQPIRELTKNWEIDVASQLEEYLEELDQICISFDDGKTTMNFAEAAMLIQGSACIYSRKVEYLYSLVYQALDLISNK--KRNQKASSIGVDGADNDLSLDNQKAEWEFLSLDDIECPTKNSINLQNDVGSTVVNIIPLTPMALIPSEELEKKNNPLLSRRGEILGSRKDFRMNTCTPHASGAFMLELNNASPMNYLNRQENNAEHNKNGLQDVAQDMV--IENSDCGAPVPVLHFSDAGSDDDGGDVDDCFLPPLPEQNMDQEHVAHLKGVPEARRYMLREKQVMEIDPTHRKQEVLDPWRSLDPFAATQD--KPFKKGRHFFIPSCINVIGSKRKRKNFGKLKEFGKWFCATYYGGQSDVKSKRKGPMFADMEVLYWKHMKERLGAQRKYQQRMIALRGRVIEELEIEAGDVEEELNDLQDQAE--DHLDYEGVEDDI-DLEHEVIGPQDNHSPMKLDLLG-ESGGVSYEELVRRNVELFIANSQQYAQETALSLRVKDWEDKIGPRLVKEEERAAFAIHDYGDRIVDALDYIKQR-------LSFANIVAGKESFEVCRYMLASLQLANDYTVEIWERDGLYESVDT-MELTLLSKVR 593          
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Match: UPI0018D74054 (condensin-2 complex subunit H2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D74054)

HSP 1 Score: 196 bits (497), Expect = 2.620e-51
Identity = 198/625 (31.68%), Postives = 284/625 (45.44%), Query Frame = 1
Query:   13 DGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTNLNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGGPRAPTGEDADILEQE--EEFLELDDVLQEADNIDLEE---EEDGATLPTRTPRGMLGAFAVERR-----------GAGDSFHIMASCMHAGGALLLDARRG--MELSPIAADVSAVHRIGFDDHQPVAGAAEGACAGAGS--------PIG-NQNRLDFDDDYGDXXXXXXGGMGDGP---------ATPNVRPGRGGVR--------QAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDA-GAIARYGMAKAVP-----QPLPAV-----KAANAHYHEFQ---------------YAVKADRRRKARERLATLRARQ---QAGVAGAALLYND--PADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAAPFIATVGDRTPLPLTLSALESS---AVSYEMLLRHHIDVFMRGCDKYAAETNLSKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTPHNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVET-PLKLV 1650
            + RF HLLQPIRDL  NW++D+AS+LE+YL E+  + I+FDGG T++NFAEAAL+IQGS  IYSKKVE LY L+Y   QT+ +   K+  + +         +DA    Q+  EEFL LDD+ Q A NIDL+E    ++   +  RTP  +L    +E             G    F +M S + A G LLLD      +E S +   +S           P+ G  +G  A  G+        P+G N + +    D           M D P           PN   GR  +R        +AP VDPW +LDPH A   P KP K G+ +        A ++    K +P     QPL  +     KA  +H  +F                Y  +  R++ AR++   + A+Q   Q      A   ND  PA E+   G  A+ A  +D            E    F    GD   +  +     S+     SYE L+R H++ +M    +Y   T L +RV  W  R+ P+L  ++    FDI  YG  V+  L +++     T     F  ++E R + D+ R+FLA LQLAN  NVE+    +  DA++T  LKL+
Sbjct:    7 EARFLHLLQPIRDLTKNWEVDIASQLEDYLLEIGEIRITFDGGSTSMNFAEAALVIQGSACIYSKKVEYLYALVY---QTLDLLASKKKLQQQSSVDEEGNDKDATFAYQKNAEEFLSLDDI-QIAKNIDLKEVDLNDNLVKIVPRTPMSLLKVNGLEEDVPLKDSKGEVLGKMADFRLMTSVVQASGTLLLDMSHMSLLEASMMRHPMST----------PLPGPLQGNNANDGNGFPDNAVEPMGDNVDEMPLHQDANMSLDDVD--MADPPDESFTEPPHPEPNQMEGRRELRPLRIQPKLKAPAVDPWTTLDPHEAKALPEKPFKKGKPFKIPASLLAANSKKRKRKGLPEKPQTQPLTPICQFINKAYYSHASKFPNSALKRPLFPEFDNLYYAEFKRQQAARKKEKEILAKQGRFQELAEQEAEEENDFNPAPEEGPLGG-AELAGMEDYGGAGLDDVDDDEGGGGFDGMAGDFGAVDRSGGEFPSTQEIVTSYEELVRKHVEAYMISAQQYTQVTELGRRVQAWEDRISPILHREEKFGFFDIHEYGTIVLDRLEEVEKKEQKTGQAIPFSKLMEDRHAHDISRLFLATLQLANVYNVEIDSRGTDEDAMDTMSLKLL 614          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10480.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RIG3_9STRA1.620e-6433.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J9RTY5_9CHLO1.400e-5933.93Condensin-2 complex subunit H2 n=1 Tax=Coccomyxa s... [more]
UPI00138FB64E2.520e-5731.86condensin-2 complex subunit H2 isoform X2 n=5 Tax=... [more]
A0A5J4Y9G7_9CHLO5.910e-5732.95Condensin-2 complex subunit H2 n=1 Tax=Trebouxia s... [more]
D7FKX7_ECTSI7.710e-5730.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1IAI4_KLENI7.670e-5332.27Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2K6EKE9_PROCO3.490e-5231.51Condensin-2 complex subunit H2 n=11 Tax=Lemuriform... [more]
A0A1S3W6U5_ERIEU4.900e-5230.77Condensin-2 complex subunit H2 n=5 Tax=Erinaceus e... [more]
UPI00140291701.790e-5131.30condensin-2 complex subunit H2 isoform X2 n=3 Tax=... [more]
UPI0018D740542.620e-5131.68condensin-2 complex subunit H2-like n=1 Tax=Patiri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10480contigS-firma_F_contig10480:1863..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FKX7
Preferred nameNCAPH2
PFAMsCNDH2_C,CNDH2_M,CNDH2_N
Max annot lvl2759|Eukaryota
KEGG koko:K11490
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
Evalue1.26e-57
EggNOG OGsKOG2359@1|root,KOG2359@2759|Eukaryota
Descriptionchromosome condensation
COG categoryS
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size1689
Cds size1689
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10480.676.1prot_S-firma_F_contig10480.676.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10480 1863..4268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.8433707-CDS-S-firma_F_contig10480:1862..19091622815582.8433707-CDS-S-firma_F_contig10480:1862..1909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 1863..1909 +
1696949433.2472258-CDS-S-firma_F_contig10480:1862..19091696949433.2472258-CDS-S-firma_F_contig10480:1862..1909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 1863..1909 +
1622815582.8540518-CDS-S-firma_F_contig10480:2410..24781622815582.8540518-CDS-S-firma_F_contig10480:2410..2478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 2411..2478 +
1696949433.258241-CDS-S-firma_F_contig10480:2410..24781696949433.258241-CDS-S-firma_F_contig10480:2410..2478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 2411..2478 +
1622815582.8638518-CDS-S-firma_F_contig10480:2531..39011622815582.8638518-CDS-S-firma_F_contig10480:2531..3901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 2532..3901 +
1696949433.2720149-CDS-S-firma_F_contig10480:2531..39011696949433.2720149-CDS-S-firma_F_contig10480:2531..3901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 2532..3901 +
1622815582.8752155-CDS-S-firma_F_contig10480:4064..42681622815582.8752155-CDS-S-firma_F_contig10480:4064..4268Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 4065..4268 +
1696949433.2898648-CDS-S-firma_F_contig10480:4064..42681696949433.2898648-CDS-S-firma_F_contig10480:4064..4268Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10480 4065..4268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10480.676.1

>prot_S-firma_F_contig10480.676.1 ID=prot_S-firma_F_contig10480.676.1|Name=mRNA_S-firma_F_contig10480.676.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=563bp
MAGRDGRFSHLLQPIRDLAANWDIDVASELEEYLTELEGLVISFDGGKTN
LNFAEAALLIQGSTLIYSKKVECLYDLIYKTLQTVQMQTMKRSERGRGGG
PRAPTGEDADILEQEEEFLELDDVLQEADNIDLEEEEDGATLPTRTPRGM
LGAFAVERRGAGDSFHIMASCMHAGGALLLDARRGMELSPIAADVSAVHR
IGFDDHQPVAGAAEGACAGAGSPIGNQNRLDFDDDYGDDDDGGDGGMGDG
PATPNVRPGRGGVRQAPRVDPWVSLDPHAAAGAPAKPLKVGRTYTTLKDA
GAIARYGMAKAVPQPLPAVKAANAHYHEFQYAVKADRRRKARERLATLRA
RQQAGVAGAALLYNDPADEDSDGGSVADRAEYDDDFEIQGTPFGMPEAAA
PFIATVGDRTPLPLTLSALESSAVSYEMLLRHHIDVFMRGCDKYAAETNL
SKRVADWRGRMDPLLKEQDVRPAFDIETYGGDVISNLSQLDGAHWLTHTP
HNFHYVVEGRDSFDVCRVFLACLQLANDGNVELVHNASTVDAVETPLKLV
LRSTERRRGVEA*
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mRNA from alignment at S-firma_F_contig10480:1863..4268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10480.676.1 ID=mRNA_S-firma_F_contig10480.676.1|Name=mRNA_S-firma_F_contig10480.676.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2406bp|location=Sequence derived from alignment at S-firma_F_contig10480:1863..4268+ (Sphaerotrichia firma ET2_F female)
ATGGCAGGCCGCGATGGACGGTTTTCTCACCTTTTGCAGCCAATTCGGTA CGAATGTCACCCCTTTACGTACAGTCGACCGTTGGTGTTGTGTTTGTGTT GAAGGGTGTGTGTTTGGCTGTTCCCCAGTCCTGAACCTTGCTTTATGTGG TGAATTGGGTGCATGGGGGTGTGTGGGAGGGAGCACTCCCCCACAGAGGC ACCTCCCACCATGCTGCCTGCACGCGGGCCTTTTGAACCTACGCCCACCT CTGCTCTCCTGTGTGTGTGTGTGTGTGTGTTTTCTTCCCCTGTGGCTTGT GGCTGTGGCTTTACATGCAAGGCTTGCCCTGTGTGAGTGGTGTAATGGTG CAGGAAGAAAGGGAGTGTGTGTCTCTGTTTTTGCTTGGCTCTGTACCTTC CCTCTCTCTTCGCCTGCCCACTCCTGTGCACTTCTTTGCATGACGCCATG CCGTTGGCCTCTTCCTAAACACACACAAAGGAGCCCGCTGGCTCTCTGCA AACCTCCACTCCACTTCCCAACCCCTCACTCTCACTTCCCAACACCAGGG ACCTCGCGGCCAACTGGGACATTGATGTCGCCAGCGAGCTGGAGGAGTAC CTGACGGAGTTGGAGGGTGGGTGCTGCTTCCCTCTCCCACCCACCCCAAA GCCCAACCCAACCCCACAGGCCTCGTGATTTCCTTCGACGGCGGCAAAAC CAACCTGAACTTTGCGGAGGCCGCCCTCCTCATCCAGGGCTCCACCCTCA TCTACAGCAAGAAGGTGGAGTGCCTCTACGACCTCATTTACAAGACCCTG CAAACCGTCCAAATGCAAACCATGAAGCGGTCGGAGCGGGGGCGTGGCGG CGGGCCACGTGCCCCCACCGGGGAGGACGCCGACATCCTGGAGCAGGAGG AGGAATTCCTGGAGCTGGACGACGTCCTCCAGGAAGCCGACAACATTGAC CTTGAGGAGGAGGAGGACGGTGCCACGCTCCCCACACGCACCCCCCGGGG CATGCTGGGCGCCTTCGCCGTGGAGCGCCGTGGTGCAGGGGACTCCTTCC ACATCATGGCATCCTGCATGCACGCGGGGGGTGCCCTCCTCCTGGACGCC CGGCGGGGGATGGAGCTGTCCCCCATCGCCGCCGACGTGTCCGCCGTCCA CCGCATCGGCTTCGACGACCACCAACCCGTGGCTGGTGCAGCGGAAGGCG CCTGTGCCGGCGCTGGGTCCCCCATTGGCAACCAGAACCGTCTGGACTTT GACGACGACTACGGCGACGACGACGACGGCGGCGACGGCGGCATGGGTGA CGGCCCAGCGACGCCCAACGTGCGACCGGGGCGTGGTGGCGTGCGCCAAG CCCCCCGGGTGGACCCCTGGGTGTCGCTGGACCCGCATGCGGCGGCTGGG GCACCGGCGAAGCCCCTCAAGGTCGGGCGTACGTACACGACGCTGAAGGA CGCGGGTGCCATTGCCAGGTACGGCATGGCCAAGGCTGTGCCGCAGCCCC TCCCCGCCGTCAAGGCCGCCAACGCCCACTACCACGAGTTCCAGTACGCG GTGAAGGCAGACCGCCGCCGGAAGGCCCGGGAGCGGCTGGCGACCCTGCG GGCCCGCCAGCAGGCTGGCGTGGCGGGGGCTGCCCTCCTCTACAACGACC CAGCGGACGAGGACAGCGACGGCGGCTCCGTCGCCGACCGTGCGGAGTAC GACGACGACTTTGAGATCCAGGGGACGCCGTTTGGTATGCCGGAGGCGGC GGCGCCCTTCATCGCGACGGTGGGTGACAGGACCCCGCTGCCCCTCACCC TCTCCGCCCTGGAGTCCTCCGCCGTGTCCTACGAGATGCTCCTCCGCCAC CACATTGACGTCTTCATGCGGGGCTGCGATAAGTACGCGGCGGAGACGAA CCTGAGCAAGCGTGTGGCGGATTGGCGGGGGCGCATGGACCCCCTGCTGA AGGAACAGGACGTGAGGCCGGCGTTTGACATTGAGACGTACGGGGGGGAC GTCATCAGCAACCTCTCCCAGTTGGATGGTGCGCACTGGGTCGTGTGTTG TGTGGCGTGGTTCGTGTGTTGCGTTTTGAGTGTTATTCATGTGTGAAATA GTTGCATGCCTGTGTTGTGTGTCCATGCGTCATGCTGACCCCACCCCTTT CGTTGCGACAGAGGAAACCGCACCCCCTGCCAAGTCAAAGTCCCGCCGGA AGCTGACGCACACCCCTCACAACTTCCACTACGTTGTGGAAGGCCGGGAC TCCTTCGACGTCTGCCGTGTCTTCCTCGCCTGCCTCCAGCTCGCCAACGA CGGCAACGTGGAGCTTGTCCACAACGCGTCTACGGTGGACGCGGTGGAGA CGCCCCTCAAGCTCGTGCTGCGCAGCACGGAGCGCCGGCGTGGGGTAGAG GCGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10480:1863..4268+

>mRNA_S-firma_F_contig10480.676.1 ID=mRNA_S-firma_F_contig10480.676.1|Name=mRNA_S-firma_F_contig10480.676.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3378bp|location=Sequence derived from alignment at S-firma_F_contig10480:1863..4268+ (Sphaerotrichia firma ET2_F female)
ATGGCAGGCCGCGATGGACGGTTTTCTCACCTTTTGCAGCCAATTCGATG
GCAGGCCGCGATGGACGGTTTTCTCACCTTTTGCAGCCAATTCGGGACCT
CGCGGCCAACTGGGACATTGATGTCGCCAGCGAGCTGGAGGAGTACCTGA
CGGAGTTGGAGGGGACCTCGCGGCCAACTGGGACATTGATGTCGCCAGCG
AGCTGGAGGAGTACCTGACGGAGTTGGAGGGCCTCGTGATTTCCTTCGAC
GGCGGCAAAACCAACCTGAACTTTGCGGAGGCCGCCCTCCTCATCCAGGG
CTCCACCCTCATCTACAGCAAGAAGGTGGAGTGCCTCTACGACCTCATTT
ACAAGACCCTGCAAACCGTCCAAATGCAAACCATGAAGCGGTCGGAGCGG
GGGCGTGGCGGCGGGCCACGTGCCCCCACCGGGGAGGACGCCGACATCCT
GGAGCAGGAGGAGGAATTCCTGGAGCTGGACGACGTCCTCCAGGAAGCCG
ACAACATTGACCTTGAGGAGGAGGAGGACGGTGCCACGCTCCCCACACGC
ACCCCCCGGGGCATGCTGGGCGCCTTCGCCGTGGAGCGCCGTGGTGCAGG
GGACTCCTTCCACATCATGGCATCCTGCATGCACGCGGGGGGTGCCCTCC
TCCTGGACGCCCGGCGGGGGATGGAGCTGTCCCCCATCGCCGCCGACGTG
TCCGCCGTCCACCGCATCGGCTTCGACGACCACCAACCCGTGGCTGGTGC
AGCGGAAGGCGCCTGTGCCGGCGCTGGGTCCCCCATTGGCAACCAGAACC
GTCTGGACTTTGACGACGACTACGGCGACGACGACGACGGCGGCGACGGC
GGCATGGGTGACGGCCCAGCGACGCCCAACGTGCGACCGGGGCGTGGTGG
CGTGCGCCAAGCCCCCCGGGTGGACCCCTGGGTGTCGCTGGACCCGCATG
CGGCGGCTGGGGCACCGGCGAAGCCCCTCAAGGTCGGGCGTACGTACACG
ACGCTGAAGGACGCGGGTGCCATTGCCAGGTACGGCATGGCCAAGGCTGT
GCCGCAGCCCCTCCCCGCCGTCAAGGCCGCCAACGCCCACTACCACGAGT
TCCAGTACGCGGTGAAGGCAGACCGCCGCCGGAAGGCCCGGGAGCGGCTG
GCGACCCTGCGGGCCCGCCAGCAGGCTGGCGTGGCGGGGGCTGCCCTCCT
CTACAACGACCCAGCGGACGAGGACAGCGACGGCGGCTCCGTCGCCGACC
GTGCGGAGTACGACGACGACTTTGAGATCCAGGGGACGCCGTTTGGTATG
CCGGAGGCGGCGGCGCCCTTCATCGCGACGGTGGGTGACAGGACCCCGCT
GCCCCTCACCCTCTCCGCCCTGGAGTCCTCCGCCGTGTCCTACGAGATGC
TCCTCCGCCACCACATTGACGTCTTCATGCGGGGCTGCGATAAGTACGCG
GCGGAGACGAACCTGAGCAAGCGTGTGGCGGATTGGCGGGGGCGCATGGA
CCCCCTGCTGAAGGAACAGGACGTGAGGCCGGCGTTTGACATTGAGACGT
ACGGGGGGGACGTCATCAGCAACCTCTCCCAGTTGGATGGTGCGCACTGG
GCCTCGTGATTTCCTTCGACGGCGGCAAAACCAACCTGAACTTTGCGGAG
GCCGCCCTCCTCATCCAGGGCTCCACCCTCATCTACAGCAAGAAGGTGGA
GTGCCTCTACGACCTCATTTACAAGACCCTGCAAACCGTCCAAATGCAAA
CCATGAAGCGGTCGGAGCGGGGGCGTGGCGGCGGGCCACGTGCCCCCACC
GGGGAGGACGCCGACATCCTGGAGCAGGAGGAGGAATTCCTGGAGCTGGA
CGACGTCCTCCAGGAAGCCGACAACATTGACCTTGAGGAGGAGGAGGACG
GTGCCACGCTCCCCACACGCACCCCCCGGGGCATGCTGGGCGCCTTCGCC
GTGGAGCGCCGTGGTGCAGGGGACTCCTTCCACATCATGGCATCCTGCAT
GCACGCGGGGGGTGCCCTCCTCCTGGACGCCCGGCGGGGGATGGAGCTGT
CCCCCATCGCCGCCGACGTGTCCGCCGTCCACCGCATCGGCTTCGACGAC
CACCAACCCGTGGCTGGTGCAGCGGAAGGCGCCTGTGCCGGCGCTGGGTC
CCCCATTGGCAACCAGAACCGTCTGGACTTTGACGACGACTACGGCGACG
ACGACGACGGCGGCGACGGCGGCATGGGTGACGGCCCAGCGACGCCCAAC
GTGCGACCGGGGCGTGGTGGCGTGCGCCAAGCCCCCCGGGTGGACCCCTG
GGTGTCGCTGGACCCGCATGCGGCGGCTGGGGCACCGGCGAAGCCCCTCA
AGGTCGGGCGTACGTACACGACGCTGAAGGACGCGGGTGCCATTGCCAGG
TACGGCATGGCCAAGGCTGTGCCGCAGCCCCTCCCCGCCGTCAAGGCCGC
CAACGCCCACTACCACGAGTTCCAGTACGCGGTGAAGGCAGACCGCCGCC
GGAAGGCCCGGGAGCGGCTGGCGACCCTGCGGGCCCGCCAGCAGGCTGGC
GTGGCGGGGGCTGCCCTCCTCTACAACGACCCAGCGGACGAGGACAGCGA
CGGCGGCTCCGTCGCCGACCGTGCGGAGTACGACGACGACTTTGAGATCC
AGGGGACGCCGTTTGGTATGCCGGAGGCGGCGGCGCCCTTCATCGCGACG
GTGGGTGACAGGACCCCGCTGCCCCTCACCCTCTCCGCCCTGGAGTCCTC
CGCCGTGTCCTACGAGATGCTCCTCCGCCACCACATTGACGTCTTCATGC
GGGGCTGCGATAAGTACGCGGCGGAGACGAACCTGAGCAAGCGTGTGGCG
GATTGGCGGGGGCGCATGGACCCCCTGCTGAAGGAACAGGACGTGAGGCC
GGCGTTTGACATTGAGACGTACGGGGGGGACGTCATCAGCAACCTCTCCC
AGTTGGATGGTGCGCACTGGCTGACGCACACCCCTCACAACTTCCACTAC
GTTGTGGAAGGCCGGGACTCCTTCGACGTCTGCCGTGTCTTCCTCGCCTG
CCTCCAGCTCGCCAACGACGGCAACGTGGAGCTTGTCCACAACGCGTCTA
CGGTGGACGCGGTGGAGACGCCCCTCAAGCTCGTGCTGCGCAGCACGGAG
CGCCGGCGTGGGGTAGAGGCGTAGCTGACGCACACCCCTCACAACTTCCA
CTACGTTGTGGAAGGCCGGGACTCCTTCGACGTCTGCCGTGTCTTCCTCG
CCTGCCTCCAGCTCGCCAACGACGGCAACGTGGAGCTTGTCCACAACGCG
TCTACGGTGGACGCGGTGGAGACGCCCCTCAAGCTCGTGCTGCGCAGCAC
GGAGCGCCGGCGTGGGGTAGAGGCGTAG
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