mRNA_S-firma_F_contig1048.673.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.080e-78 Identity = 144/259 (55.60%), Postives = 166/259 (64.09%), Query Frame = 1
Query: 214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDD 990
V +LGAA+A + VS PSKGL V+A RT+TVEW GT+ ++R EIDLY+CG C + D CGDWV ALC YG DG C PD G+YD++MPEP + S YKVRV A CS+ F LL S P GD DGP LEV SP D A +YTVEF YDNG+GSS DRF IDLY AD G GDCG ++ SICDKP IGCKDS GDYDV IP T G+Y+IRV RF DDSLY CSG F + D
Sbjct: 7 VALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCME-DDCGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPM-----LGTSGSGYKVRVWDIHDEEDA--DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRAD-GEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 251 bits (640), Expect = 2.150e-78 Identity = 145/266 (54.51%), Postives = 169/266 (63.53%), Query Frame = 1
Query: 214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGLSPYD 1011
V ++LGAA+A V+ PS L V+A RT+TVEW G D R EIDLYHCG C + DSCGDWV ALC YG +G C PD G+YD++MPEP + + + S YKVRV CS+AF L+ SE P G G FL V SP E D A AGE+YTVEF YDNG+GS DRF IDLY AD G GDCG ++TSICDKP IGCKDS GDYDV IP T G Y+IRVGRF D+ LYGCSG F ++ D YD
Sbjct: 7 VALACAMLGAANALEVVT-PSADLIVVADRTYTVEWTGA-DSGRFEIDLYHCGSMCME-DSCGDWVTALCPYGEEG---C---PDNEGDYDIVMPEPMSGESN-----SGYKVRVMDVSDEDSM--DCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAD-GDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYD 255
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 231 bits (589), Expect = 1.840e-70 Identity = 129/250 (51.60%), Postives = 156/250 (62.40%), Query Frame = 1
Query: 232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV 981
+LGAA +A+ V P++G V+A R +TVEW GT +R EIDLY+CG C + D CGDWV ALC YG DG C PD G+YD++MPEP + S YKVRV + CS+ F L+ P GD GP++ V SP D A AGE+YTVEF YDNGLGSS RF IDLY A G GDCG ++ ++CDKP IGCKDS GDYDV IP G Y IRVG F DDS+YGCS F ++
Sbjct: 1 MLGAA-SALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCME-DECGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVADVDD--DDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSA-TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.000e-69 Identity = 131/250 (52.40%), Postives = 159/250 (63.60%), Query Frame = 1
Query: 232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV 981
+LGAA+A VS P+ G V+A +TVEW G T R +IDLY+CG C + D CGDWV ALC YG DG C PD G+YDV+MPEP +D S YKV V + + GCS F+L+ S P D+ G ++ V SP + D A+AG +YTVEF YDNGLGSS +RF IDLY + G GDCG ++T+ICDKP IGCKDS GDYDV IP GT G Y IRVG F DD +YGCS F +V
Sbjct: 13 MLGAANALEVVS-PAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSVCME-DECGDWVTALCPYGDDG---C---PDTQGDYDVVMPEP------MDGTSSGYKVMVTDSSDESDY--GCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLY-SSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 227 bits (578), Expect = 4.250e-69 Identity = 130/252 (51.59%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRD 987
+LGAA+A VS P+ G+ V+A RT+TVEW GT+D SR EIDLY+CG C + D CGDWV ALC YGADG C PD G+YD++MPEP + S YKV V + + GCS F+L+ S P G+V G L V SP + D A+AG YTVE+ Y+NGLGSS DRF IDLY G GDCG ++ ++CDKP IGC DS GDYDV IP T G Y +RVG F+DD ++ CS F +V D
Sbjct: 13 MLGAANALEVVS-PAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGSFCME-DECGDWVTALCPYGADG---C---PDTQGDYDIVMPEP------MAGTSSGYKVVVTDSNDESSM--GCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 221 bits (563), Expect = 8.600e-67 Identity = 127/264 (48.11%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV-RDDGGLS 1002
V +LG A +A+ V P+ G V++ R +TVEW+GT R EIDLY+C C + D CG+WV ALC YG DG C PD G+YD++MPEP + S YKVRV + CS+ F L+ P D GP++ V SP D A AGE+YTVEF YDNGLGSS RF IDLY A G GDCG ++ ++CDKP IGCKDS GDYDV IP G Y IRVG F D+S+YGCS F ++ DD +S
Sbjct: 8 VALACGMLGVA-SALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCME-DECGEWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVADVDDEDSS--DCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAA-TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMS 255
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.510e-66 Identity = 129/253 (50.99%), Postives = 160/253 (63.24%), Query Frame = 1
Query: 232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDD 990
+L AA+A VS P G+ VLA R +TVEW GTT R EIDLY+C C D D CGDWV ALC YGADG C PD+ G+YD++MPEP + S YKV V++A + GCS+ F+L+ SE P+ G++ G L V SP + D A+AGE YTVE+ Y+NG GSS DRF +DLY G GDCG ++T++CD+P IGC DS GDYDV IP T G Y IRVG F D+ +Y CS F V D
Sbjct: 13 MLSAANALEVVS-PDGGISVLADRAYTVEWTGTT-TGRFEIDLYYCNSFCMD-DVCGDWVTALCPYGADG---C---PDSAGDYDIIMPEP------MSGTSSGYKVMVKNAEDESDM--GCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVG-GTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 201 bits (510), Expect = 4.670e-59 Identity = 124/248 (50.00%), Postives = 149/248 (60.08%), Query Frame = 1
Query: 214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDST----GDYDVTIPPGTAPGQYRIRVGRFADD 945
V +LGAA+A + VS PSKGL V+A RT+TVEW GT+ ++R EIDLY+CG C + D CGDWV ALC YG DG C PD G+YD++MPEP + S YKVRV A CS+ F L+ S P GD DGP LEV SP D A +YTVEF YDNG+GS DRF IDLY AD G GDCG ++ SICDKP IGCKDS G + V G G++ + V R+ D
Sbjct: 8 VALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCME-DDCGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVWDIHDEEDA--DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRAD-GDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRYLHD 239
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 191 bits (484), Expect = 9.240e-55 Identity = 110/255 (43.14%), Postives = 146/255 (57.25%), Query Frame = 1
Query: 253 AVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTC---NDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEP---HNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGL 999
A+ V P+ V +GR + V W G + R E+DL++CG +A+ CG W+A +CN + D C + D + V PEP H+ + Y+VR+ GT CSE F L+ S + G+ GP +EV++P N AVAGE YTVEF YDNG G RFKIDLY A+ G GDCG W+TS+CDKPD+GC+DS GDYDV IP + G Y+IRVG F DDS+Y CS F + + G+
Sbjct: 24 ALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCN---EADDACMIQDDQSSQ--VTFPEPVAGHS--------NNGYRVRISEVGTDNFR---CSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAE-GNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGV 261
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.210e-54 Identity = 110/253 (43.48%), Postives = 146/253 (57.71%), Query Frame = 1
Query: 253 AVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTC---NDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARE-SQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGL 999
A+ V P+ V++ + V W G + + R EIDL++CG +AD CG WV LC A+GD C + D + V +PEP +D S Y+VR+ GT CS+ F L+ S D DGP +EV++P AVAG YTVEF YDNG G+ RFKIDLY+A+ G GDCG W++S+CDKPD+GC D+ GDYD+ IP + G Y+IRVG F DDS++ CS F VV + GL
Sbjct: 24 ALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLC---AEGDDACMNQDDLMSQ--VTLPEP------VDGHSNSGYRVRIGKVGTETFR---CSDEFYLMSSA---DASDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAE-GTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1048.673.1 >prot_S-firma_F_contig1048.673.1 ID=prot_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=383bp SSLLPTTSAQSTPSSSFLSSSLLGGLQQQSLLLPSPATTSSSRSRCFSVLback to top mRNA from alignment at S-firma_F_contig1048:5906..9536+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1048.673.1 ID=mRNA_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3631bp|location=Sequence derived from alignment at S-firma_F_contig1048:5906..9536+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1048:5906..9536+ >mRNA_S-firma_F_contig1048.673.1 ID=mRNA_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2298bp|location=Sequence derived from alignment at S-firma_F_contig1048:5906..9536+ (Sphaerotrichia firma ET2_F female)back to top |