mRNA_S-firma_F_contig1048.673.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1048.673.1
Unique NamemRNA_S-firma_F_contig1048.673.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.080e-78
Identity = 144/259 (55.60%), Postives = 166/259 (64.09%), Query Frame = 1
Query:  214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDD 990
            V     +LGAA+A + VS PSKGL V+A RT+TVEW GT+ ++R EIDLY+CG  C + D CGDWV ALC YG DG   C   PD  G+YD++MPEP      +    S YKVRV        A   CS+ F LL S   P  GD DGP LEV SP   D A    +YTVEF YDNG+GSS DRF IDLY AD G GDCG ++ SICDKP IGCKDS GDYDV IP  T  G+Y+IRV RF DDSLY CSG F +   D
Sbjct:    7 VALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCME-DDCGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPM-----LGTSGSGYKVRVWDIHDEEDA--DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRAD-GEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGD 249          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.150e-78
Identity = 145/266 (54.51%), Postives = 169/266 (63.53%), Query Frame = 1
Query:  214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGLSPYD 1011
            V    ++LGAA+A   V+ PS  L V+A RT+TVEW G  D  R EIDLYHCG  C + DSCGDWV ALC YG +G   C   PD  G+YD++MPEP + + +     S YKVRV            CS+AF L+ SE  P  G   G FL V SP E D A AGE+YTVEF YDNG+GS  DRF IDLY AD G GDCG ++TSICDKP IGCKDS GDYDV IP  T  G Y+IRVGRF D+ LYGCSG F ++  D     YD
Sbjct:    7 VALACAMLGAANALEVVT-PSADLIVVADRTYTVEWTGA-DSGRFEIDLYHCGSMCME-DSCGDWVTALCPYGEEG---C---PDNEGDYDIVMPEPMSGESN-----SGYKVRVMDVSDEDSM--DCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMAD-GDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYD 255          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.840e-70
Identity = 129/250 (51.60%), Postives = 156/250 (62.40%), Query Frame = 1
Query:  232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV 981
            +LGAA +A+ V  P++G  V+A R +TVEW GT   +R EIDLY+CG  C + D CGDWV ALC YG DG   C   PD  G+YD++MPEP +         S YKVRV         +  CS+ F L+     P  GD  GP++ V SP   D A AGE+YTVEF YDNGLGSS  RF IDLY A  G GDCG ++ ++CDKP IGCKDS GDYDV IP     G Y IRVG F DDS+YGCS  F ++
Sbjct:    1 MLGAA-SALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCME-DECGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVADVDD--DDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSA-TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.000e-69
Identity = 131/250 (52.40%), Postives = 159/250 (63.60%), Query Frame = 1
Query:  232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV 981
            +LGAA+A   VS P+ G  V+A   +TVEW G T   R +IDLY+CG  C + D CGDWV ALC YG DG   C   PD  G+YDV+MPEP      +D   S YKV V  +   +    GCS  F+L+ S   P   D+ G ++ V SP + D A+AG +YTVEF YDNGLGSS +RF IDLY +  G GDCG ++T+ICDKP IGCKDS GDYDV IP GT  G Y IRVG F DD +YGCS  F +V
Sbjct:   13 MLGAANALEVVS-PAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSVCME-DECGDWVTALCPYGDDG---C---PDTQGDYDVVMPEP------MDGTSSGYKVMVTDSSDESDY--GCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLY-SSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 4.250e-69
Identity = 130/252 (51.59%), Postives = 161/252 (63.89%), Query Frame = 1
Query:  232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRD 987
            +LGAA+A   VS P+ G+ V+A RT+TVEW GT+D SR EIDLY+CG  C + D CGDWV ALC YGADG   C   PD  G+YD++MPEP      +    S YKV V  +   +    GCS  F+L+ S   P  G+V G  L V SP + D A+AG  YTVE+ Y+NGLGSS DRF IDLY    G GDCG ++ ++CDKP IGC DS GDYDV IP  T  G Y +RVG F+DD ++ CS  F +V D
Sbjct:   13 MLGAANALEVVS-PAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGSFCME-DECGDWVTALCPYGADG---C---PDTQGDYDIVMPEP------MAGTSSGYKVVVTDSNDESSM--GCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 8.600e-67
Identity = 127/264 (48.11%), Postives = 157/264 (59.47%), Query Frame = 1
Query:  214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVV-RDDGGLS 1002
            V     +LG A +A+ V  P+ G  V++ R +TVEW+GT    R EIDLY+C   C + D CG+WV ALC YG DG   C   PD  G+YD++MPEP +         S YKVRV        +   CS+ F L+     P   D  GP++ V SP   D A AGE+YTVEF YDNGLGSS  RF IDLY A  G GDCG ++ ++CDKP IGCKDS GDYDV IP     G Y IRVG F D+S+YGCS  F ++  DD  +S
Sbjct:    8 VALACGMLGVA-SALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCME-DECGEWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVADVDDEDSS--DCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAA-TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMS 255          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.510e-66
Identity = 129/253 (50.99%), Postives = 160/253 (63.24%), Query Frame = 1
Query:  232 LLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDD 990
            +L AA+A   VS P  G+ VLA R +TVEW GTT   R EIDLY+C   C D D CGDWV ALC YGADG   C   PD+ G+YD++MPEP      +    S YKV V++A   +    GCS+ F+L+ SE  P+ G++ G  L V SP + D A+AGE YTVE+ Y+NG GSS DRF +DLY    G GDCG ++T++CD+P IGC DS GDYDV IP  T  G Y IRVG F D+ +Y CS  F V   D
Sbjct:   13 MLSAANALEVVS-PDGGISVLADRAYTVEWTGTT-TGRFEIDLYYCNSFCMD-DVCGDWVTALCPYGADG---C---PDSAGDYDIIMPEP------MSGTSSGYKVMVKNAEDESDM--GCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVG-GTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.670e-59
Identity = 124/248 (50.00%), Postives = 149/248 (60.08%), Query Frame = 1
Query:  214 VVAGASLLGAAHAAVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDST----GDYDVTIPPGTAPGQYRIRVGRFADD 945
            V     +LGAA+A + VS PSKGL V+A RT+TVEW GT+ ++R EIDLY+CG  C + D CGDWV ALC YG DG   C   PD  G+YD++MPEP +         S YKVRV        A   CS+ F L+ S   P  GD DGP LEV SP   D A    +YTVEF YDNG+GS  DRF IDLY AD G GDCG ++ SICDKP IGCKDS     G + V    G   G++ + V R+  D
Sbjct:    8 VALACGMLGAANA-LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCME-DDCGDWVTALCPYGEDG---C---PDNEGDYDIVMPEPMS-----GTSGSGYKVRVWDIHDEEDA--DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRAD-GDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRYLHD 239          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 9.240e-55
Identity = 110/255 (43.14%), Postives = 146/255 (57.25%), Query Frame = 1
Query:  253 AVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTC---NDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEP---HNPDIDIDARESQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGL 999
            A+ V  P+    V +GR + V W G   + R E+DL++CG       +A+ CG W+A +CN   + D  C  + D   +  V  PEP   H+         + Y+VR+   GT       CSE F L+ S    + G+  GP +EV++P  N  AVAGE YTVEF YDNG G    RFKIDLY A+ G GDCG W+TS+CDKPD+GC+DS GDYDV IP  +  G Y+IRVG F DDS+Y CS  F +   + G+
Sbjct:   24 ALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCN---EADDACMIQDDQSSQ--VTFPEPVAGHS--------NNGYRVRISEVGTDNFR---CSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAE-GNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGV 261          
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.210e-54
Identity = 110/253 (43.48%), Postives = 146/253 (57.71%), Query Frame = 1
Query:  253 AVTVSMPSKGLQVLAGRTFTVEWAGTTDESRVEIDLYHCGDTC---NDADSCGDWVAALCNYGADGDAGCSQEPDAPGEYDVMMPEPHNPDIDIDARE-SQYKVRVRSAGTAAGAAAGCSEAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLGSSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGTAPGQYRIRVGRFADDSLYGCSGRFHVVRDDGGL 999
            A+ V  P+    V++   + V W G + + R EIDL++CG       +AD CG WV  LC   A+GD  C  + D   +  V +PEP      +D    S Y+VR+   GT       CS+ F L+ S       D DGP +EV++P     AVAG  YTVEF YDNG G+   RFKIDLY+A+ G GDCG W++S+CDKPD+GC D+ GDYD+ IP  +  G Y+IRVG F DDS++ CS  F VV +  GL
Sbjct:   24 ALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLC---AEGDDACMNQDDLMSQ--VTLPEP------VDGHSNSGYRVRIGKVGTETFR---CSDEFYLMSSA---DASDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAE-GTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1048.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE1.080e-7855.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI2.150e-7854.51EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D8LI46_ECTSI1.840e-7051.60EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI1.000e-6952.40Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI4.250e-6951.59EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE8.600e-6748.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY62_9PHAE1.510e-6650.99GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI4.670e-5950.00Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KPZ5_9PHAE9.240e-5543.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI2.210e-5443.48EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1048contigS-firma_F_contig1048:5906..9536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1152
Cds size1149
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1048.673.1prot_S-firma_F_contig1048.673.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1048 5906..9535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5106547-CDS-S-firma_F_contig1048:5905..62071622815582.5106547-CDS-S-firma_F_contig1048:5905..6207Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 5906..6207 +
1696949432.9604068-CDS-S-firma_F_contig1048:5905..62071696949432.9604068-CDS-S-firma_F_contig1048:5905..6207Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 5906..6207 +
1622815582.520513-CDS-S-firma_F_contig1048:6614..67021622815582.520513-CDS-S-firma_F_contig1048:6614..6702Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 6615..6702 +
1696949432.9885986-CDS-S-firma_F_contig1048:6614..67021696949432.9885986-CDS-S-firma_F_contig1048:6614..6702Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 6615..6702 +
1622815582.5295894-CDS-S-firma_F_contig1048:7489..78251622815582.5295894-CDS-S-firma_F_contig1048:7489..7825Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 7490..7825 +
1696949432.999087-CDS-S-firma_F_contig1048:7489..78251696949432.999087-CDS-S-firma_F_contig1048:7489..7825Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 7490..7825 +
1622815582.539078-CDS-S-firma_F_contig1048:8474..86131622815582.539078-CDS-S-firma_F_contig1048:8474..8613Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 8475..8613 +
1696949433.0084958-CDS-S-firma_F_contig1048:8474..86131696949433.0084958-CDS-S-firma_F_contig1048:8474..8613Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 8475..8613 +
1622815582.549141-CDS-S-firma_F_contig1048:9251..95351622815582.549141-CDS-S-firma_F_contig1048:9251..9535Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 9252..9535 +
1696949433.019096-CDS-S-firma_F_contig1048:9251..95351696949433.019096-CDS-S-firma_F_contig1048:9251..9535Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 9252..9535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1048.673.1

>prot_S-firma_F_contig1048.673.1 ID=prot_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=383bp
SSLLPTTSAQSTPSSSFLSSSLLGGLQQQSLLLPSPATTSSSRSRCFSVL
QPTVEIFDLQGIMAHRWTKSAVVAGASLLGAAHAAVTVSMPSKGLQVLAG
RTFTVEWAGTTDESRVEIDLYHCGDTCNDADSCGDWVAALCNYGADGDAG
CSQEPDAPGEYDVMMPEPHNPDIDIDARESQYKVRVRSAGTAAGAAAGCS
EAFSLLPSEREPQPGDVDGPFLEVISPMENDGAVAGEDYTVEFAYDNGLG
SSADRFKIDLYYADVGRGDCGKWLTSICDKPDIGCKDSTGDYDVTIPPGT
APGQYRIRVGRFADDSLYGCSGRFHVVRDDGGLSPYDDEGGGQQQQQQPK
PDEDEHLDEDDWALSMGFSYTFHDGDDPHYPGG
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mRNA from alignment at S-firma_F_contig1048:5906..9536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1048.673.1 ID=mRNA_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3631bp|location=Sequence derived from alignment at S-firma_F_contig1048:5906..9536+ (Sphaerotrichia firma ET2_F female)
TCTTCTCTCCTTCCCACCACCTCGGCCCAGAGCACGCCTTCCTCTTCCTT TCTTAGCTCTTCTTTGCTTGGTGGTCTTCAGCAGCAGTCGCTCCTTCTCC CCTCTCCTGCTACAACCTCCTCTTCTCGCTCGCGCTGTTTCTCTGTCCTG CAACCAACCGTCGAAATATTTGATCTACAAGGCATCATGGCGCATCGATG GACTAAGAGCGCCGTTGTAGCTGGGGCTTCGCTGCTGGGCGCGGCCCATG CAGCCGTGACAGTATCAATGCCTTCAAAGGGGCTGCAAGTTCTCGCTGGC AGGTGAGTGAGCACTGGGTGCTAGTCTAGTGTTGGTTTGTTGTGTGCGTA TCGGCCACTCACGCTCTTCTCTTCTTCCTGTCTGCTGTTTTGAGTTTTGG ATGAAACTCTGGCATCAAGCCTACTATACAACTGACTGCTTGGAGCCTCT GCAGGCCACCGCAGCAAGGGAGGAGCGCCATAAGTGCGCAAGCTCTTAGT TGTATAGTTGCGTGCTGCCGTATACGCCCACGCCTTACGCGGAAAAGGTA GGTAGTAGGTGCGCACCCTGAGAAATCGGTCCGCTGACGATCGCTGATTG ATGACAAAATCTCTGGTGCCAACCATTTTCGCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTG ATGGAGCAGGACGTTCACGGTGGAATGGGCGGGCACAACCGACGAGAGCA GAGTTGAGATCGACCTCTACCACTGCGGAGACACCTGCAACGATGCGGTG AGCATATCGCAGGCCCATTTTCTTTTTTTTAACCTTGTTGCATGATCGGC TGACAGAGCCCTCCCTGCCTGCGCGGGGGGTCACCCCAACTTCACGAGGG GGACGATCTATCTATGTGGCAAGGAGAACAGCAGGGATAATTACCACGTT CTCCTGCTTTTGCGCTCGCTTCCTGTCGTCCTATCGTTTGTTTGGTGGGC TATGTACAACAATATAGATAGATAGATAGGCCATCCTCTTCCTTTAGTAG TGCTCTTATTTCTTTCTCCCCGCAGTCAAAAACCCAAAACGGTTGCGTCG GGGGTCCCCGAACTCTGCACCCTCCGCTGGTTCCTTCTGACACATGTCAG TAGTCTCCCTTGTGATAGCTTCTCCTATTGCGTACGTTCCCTAAATGGCC ACCACCGTGAAAGCATTCCCAACACCTCTGACTGCAACAAACGCCTGTTT TTGTTTGTGCTCGAGAAGTGTTGGCGGCATTGATCGTATGTAGTTACAAA AACCGTCTTCTACTAGTCTACTAAAAAAATAAAGCTCGCCGAGGATCATC ATCATGATCATCATCATCCTTGTCAAATAAGCTTTGCTGTGCCCATCTTG CTGCAGTCTGCGCCTTCGTATACCGAAACGCATACTGAACCGAATAATGC ACTGGCTGCGGGAGGGAGGTATCACCCACCACCCGCCCTTTCTTTGCCTC GTATCCAAAGTATTCCTCCGTACTTACCACCACCACCACAACCACCGCCA CCGCCGTTGTCCGCCTTCTCCCCTTTCTTTTCAGGACTCGTGCGGCGACT GGGTGGCCGCCCTCTGCAACTACGGCGCCGACGGGGACGCGGGGTGCTCC CAGGAGCCCGATGCCCCCGGCGAGTACGACGTCATGATGCCCGAACCTCA CAACCCCGACATCGACATCGACGCCAGGGAGAGCCAGTACAAGGTCCGCG TGAGGTCCGCGGGGACGGCGGCGGGGGCGGCGGCGGGCTGCTCCGAGGCG TTCTCGCTCCTCCCGTCGGAGAGGGAGCCGCAGCCCGGCGACGTGGACGG GCCGTTCCTGGAGGTGATTTCTCCCATGGAGAACGACGGCGCTGTCGCGG GAGAGGACTACACTGTTGAGGTATGTATGATACGTGTGTTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTATGTCCGAGACAGG ACGACCAGGGTTGGTTCGTTTGTCTTGCTTGGGTGCGTTCCTTCAATTTT TTGTCCGTTGCGGTTTTCTTCTGGGTGGTGATGATGGTGTCTGTCGACCG CGCGAATTGAACTGGCAGAAGATGGAACGGTTGTGGTTGTGGTTGTGGTT GCTGCTGCTGCTGTCTGGTGGATCGAGTGCTGGCGTCTGGTTGTTGGGGT TGCGGTGGCATCGGTGCCTCTGTCTCCGATGTTTTACTGAAACCTGTGTG GTGTGCGGCACGCAGCTTCACATGTAGAATATACTACATGTTTACCTCTC GGCTCATCCATACGCATGCATGCTACCTGTGTGCAGTACGCAGATTCACG GGTAGAGTACATGTTATACCTACCTCTTGGCTCATCCATACGCATGATGA TGCCGCCTCCGTTTCTTCCGCTCACCTCGTCCCACCTGCTTCCTCCCTCC TTTGCACATTTATATCGTTGACAAAACCACCCTCCTTTGCGTACGTATAT TGCTGACAAACCCACCCTCAATGCCCTGCCTGCTACTACTAACCACTATG TGTGTACGTACATAATTAGTTTGCCTACGACAACGGCCTCGGCTCTTCGG CGGACCGTTTCAAGATCGACCTCTACTATGCGGACGTCGGGCGCGGCGAC TGCGGCAAGTGGCTCACGTCCATCTGCGACAAGCCGGACATCGGCTGCAA AGACTCAAGTGAGAAGAAAGCAAAGAAAGCTCGAATCGATCAGAGGGCGA TCGTTGTTCTGGCTGGCGGGGGGATGGGGTGCGGGGGAGGACGTCTGATG TTGGGAAATGTGTGTTGCATGTTGTATCGAGTCGATGTATGTATGTAAAG TATGTACCGTCGTGGCATTTAGTTAGGTCCTTCCGGCGACTGGTCTATGT TGTATGTAGTACCGTCGTTGCGTTTAGTTAGGTCCTTCCGGCGACTGGTT ACACAATACAAGAAGATAACCCATGCTATTATTTACATGCAGTCATTTTG GCTTGAACACTGGCTGTGTACGCGCTAGAACGCCTTGCAGTAAATTTGCA CCAACAACAACAGAGAGAGGTCCTAATTTTGGTTCATGAAGAGACCCGAC AAACGACCCCAACCCTCCCTGACCCCTCTCGTGCGATGTTTCTTTCTAAC AACGCCGACGTCTCCCGCCTCTCTCCTGCCCTACCCTTGCCCCTGCCCTT GCCCTGCCGTGCCCTCCGTGTCGTGCTCTGCTCCTGCCCTTCCTTGTGTT ATTTATTATTTACTCCGAAAACAAACCCAAAACAAATCCGATTCCCTCCG AATCAACAAACACCTCACCCACCCACCCACCCACCCACCCACCCAGCCGG CGACTACGACGTGACCATCCCTCCGGGCACGGCGCCCGGCCAGTACCGCA TCCGCGTGGGGCGCTTCGCGGACGACTCCCTGTACGGCTGCTCCGGCAGG TTCCACGTCGTGCGCGATGATGGCGGCCTCTCCCCCTACGACGACGAAGG CGGCGGGCAGCAGCAGCAGCAGCAGCCCAAGCCTGACGAGGACGAACACT TGGACGAGGATGACTGGGCCTTGTCCATGGGATTCAGCTACACGTTCCAC GATGGCGACGACCCGCACTACCCCGGCGGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig1048:5906..9536+

>mRNA_S-firma_F_contig1048.673.1 ID=mRNA_S-firma_F_contig1048.673.1|Name=mRNA_S-firma_F_contig1048.673.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2298bp|location=Sequence derived from alignment at S-firma_F_contig1048:5906..9536+ (Sphaerotrichia firma ET2_F female)
TCTTCTCTCCTTCCCACCACCTCGGCCCAGAGCACGCCTTCCTCTTCCTT
TCTTAGCTCTTCTTTGCTTGGTGGTCTTCAGCAGCAGTCGCTCCTTCTCC
CCTCTCCTGCTACAACCTCCTCTTCTCGCTCGCGCTGTTTCTCTGTCCTG
CAACCAACCGTCGAAATATTTGATCTACAAGGCATCATGGCGCATCGATG
GACTAAGAGCGCCGTTGTAGCTGGGGCTTCGCTGCTGGGCGCGGCCCATG
CAGCCGTGACAGTATCAATGCCTTCAAAGGGGCTGCAAGTTCTCGCTGGC
AGTCTTCTCTCCTTCCCACCACCTCGGCCCAGAGCACGCCTTCCTCTTCC
TTTCTTAGCTCTTCTTTGCTTGGTGGTCTTCAGCAGCAGTCGCTCCTTCT
CCCCTCTCCTGCTACAACCTCCTCTTCTCGCTCGCGCTGTTTCTCTGTCC
TGCAACCAACCGTCGAAATATTTGATCTACAAGGCATCATGGCGCATCGA
TGGACTAAGAGCGCCGTTGTAGCTGGGGCTTCGCTGCTGGGCGCGGCCCA
TGCAGCCGTGACAGTATCAATGCCTTCAAAGGGGCTGCAAGTTCTCGCTG
GCAGGACGTTCACGGTGGAATGGGCGGGCACAACCGACGAGAGCAGAGTT
GAGATCGACCTCTACCACTGCGGAGACACCTGCAACGATGCGGACGTTCA
CGGTGGAATGGGCGGGCACAACCGACGAGAGCAGAGTTGAGATCGACCTC
TACCACTGCGGAGACACCTGCAACGATGCGGACTCGTGCGGCGACTGGGT
GGCCGCCCTCTGCAACTACGGCGCCGACGGGGACGCGGGGTGCTCCCAGG
AGCCCGATGCCCCCGGCGAGTACGACGTCATGATGCCCGAACCTCACAAC
CCCGACATCGACATCGACGCCAGGGAGAGCCAGTACAAGGTCCGCGTGAG
GTCCGCGGGGACGGCGGCGGGGGCGGCGGCGGGCTGCTCCGAGGCGTTCT
CGCTCCTCCCGTCGGAGAGGGAGCCGCAGCCCGGCGACGTGGACGGGCCG
TTCCTGGAGGTGATTTCTCCCATGGAGAACGACGGCGCTGTCGCGGGAGA
GGACTACACTGTTGAGGACTCGTGCGGCGACTGGGTGGCCGCCCTCTGCA
ACTACGGCGCCGACGGGGACGCGGGGTGCTCCCAGGAGCCCGATGCCCCC
GGCGAGTACGACGTCATGATGCCCGAACCTCACAACCCCGACATCGACAT
CGACGCCAGGGAGAGCCAGTACAAGGTCCGCGTGAGGTCCGCGGGGACGG
CGGCGGGGGCGGCGGCGGGCTGCTCCGAGGCGTTCTCGCTCCTCCCGTCG
GAGAGGGAGCCGCAGCCCGGCGACGTGGACGGGCCGTTCCTGGAGGTGAT
TTCTCCCATGGAGAACGACGGCGCTGTCGCGGGAGAGGACTACACTGTTG
AGTTTGCCTACGACAACGGCCTCGGCTCTTCGGCGGACCGTTTCAAGATC
GACCTCTACTATGCGGACGTCGGGCGCGGCGACTGCGGCAAGTGGCTCAC
GTCCATCTGCGACAAGCCGGACATCGGCTGCAAAGACTCAATTTGCCTAC
GACAACGGCCTCGGCTCTTCGGCGGACCGTTTCAAGATCGACCTCTACTA
TGCGGACGTCGGGCGCGGCGACTGCGGCAAGTGGCTCACGTCCATCTGCG
ACAAGCCGGACATCGGCTGCAAAGACTCAACCGGCGACTACGACGTGACC
ATCCCTCCGGGCACGGCGCCCGGCCAGTACCGCATCCGCGTGGGGCGCTT
CGCGGACGACTCCCTGTACGGCTGCTCCGGCAGGTTCCACGTCGTGCGCG
ATGATGGCGGCCTCTCCCCCTACGACGACGAAGGCGGCGGGCAGCAGCAG
CAGCAGCAGCCCAAGCCTGACGAGGACGAACACTTGGACGAGGATGACTG
GGCCTTGTCCATGGGATTCAGCTACACGTTCCACGATGGCGACGACCCGC
ACTACCCCGGCGGCCCGGCGACTACGACGTGACCATCCCTCCGGGCACGG
CGCCCGGCCAGTACCGCATCCGCGTGGGGCGCTTCGCGGACGACTCCCTG
TACGGCTGCTCCGGCAGGTTCCACGTCGTGCGCGATGATGGCGGCCTCTC
CCCCTACGACGACGAAGGCGGCGGGCAGCAGCAGCAGCAGCAGCCCAAGC
CTGACGAGGACGAACACTTGGACGAGGATGACTGGGCCTTGTCCATGGGA
TTCAGCTACACGTTCCACGATGGCGACGACCCGCACTACCCCGGCGGC
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