mRNA_S-firma_F_contig1048.672.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1048.672.1
Unique NamemRNA_S-firma_F_contig1048.672.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1048.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1048contigS-firma_F_contig1048:3471..3822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3890743-CDS-S-firma_F_contig1048:3470..37791622815582.3890743-CDS-S-firma_F_contig1048:3470..3779Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 3471..3779 +
1696949432.8815188-CDS-S-firma_F_contig1048:3470..37791696949432.8815188-CDS-S-firma_F_contig1048:3470..3779Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 3471..3779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.400639-UTR-S-firma_F_contig1048:3779..38221622815582.400639-UTR-S-firma_F_contig1048:3779..3822Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1048 3780..3822 +
1696949432.8972917-UTR-S-firma_F_contig1048:3779..38221696949432.8972917-UTR-S-firma_F_contig1048:3779..3822Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1048 3780..3822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1048.672.1prot_S-firma_F_contig1048.672.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1048 3471..3779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1048.672.1

>prot_S-firma_F_contig1048.672.1 ID=prot_S-firma_F_contig1048.672.1|Name=mRNA_S-firma_F_contig1048.672.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=103bp
LLLHPLHPTPPSITSNLFLLSQSFYHVFSICFSNPFPSCPTFLSLSLGPR
RSLFGGGGLPLPLVLLVREWRTTFDCPLSTRASAVRECLKHSSSTSNQTL
PT*
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mRNA from alignment at S-firma_F_contig1048:3471..3822+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1048.672.1 ID=mRNA_S-firma_F_contig1048.672.1|Name=mRNA_S-firma_F_contig1048.672.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=352bp|location=Sequence derived from alignment at S-firma_F_contig1048:3471..3822+ (Sphaerotrichia firma ET2_F female)
CTTCTTCTCCATCCTCTACACCCTACTCCACCTTCAATTACATCAAATTT
ATTTCTGCTCTCTCAATCCTTCTATCACGTATTTTCCATTTGTTTTTCGA
ACCCCTTCCCTTCCTGTCCTACTTTTCTTTCTTTGTCACTCGGGCCCCGT
CGCTCCCTATTTGGCGGGGGGGGCCTACCTCTTCCCCTAGTACTGCTTGT
CCGGGAATGGCGCACCACGTTTGACTGCCCTCTTTCAACACGAGCGTCTG
CTGTGCGTGAATGCCTCAAACACAGCAGTAGTACATCAAACCAGACGCTC
CCCACATGATCGAAAACCTATAGGTCGGCCAGGCTTTGACCAAGCGTGCT
GC
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Coding sequence (CDS) from alignment at S-firma_F_contig1048:3471..3822+

>mRNA_S-firma_F_contig1048.672.1 ID=mRNA_S-firma_F_contig1048.672.1|Name=mRNA_S-firma_F_contig1048.672.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=618bp|location=Sequence derived from alignment at S-firma_F_contig1048:3471..3822+ (Sphaerotrichia firma ET2_F female)
CTTCTTCTCCATCCTCTACACCCTACTCCACCTTCAATTACATCAAATTT
ATTTCTGCTCTCTCAATCCTTCTATCACGTATTTTCCATTTGTTTTTCGA
ACCCCTTCCCTTCCTGTCCTACTTTTCTTTCTTTGTCACTCGGGCCCCGT
CGCTCCCTATTTGGCGGGGGGGGCCTACCTCTTCCCCTAGTACTGCTTGT
CCGGGAATGGCGCACCACGTTTGACTGCCCTCTTTCAACACGAGCGTCTG
CTGTGCGTGAATGCCTCAAACACAGCAGTAGTACATCAAACCAGACGCTC
CCCACATGACTTCTTCTCCATCCTCTACACCCTACTCCACCTTCAATTAC
ATCAAATTTATTTCTGCTCTCTCAATCCTTCTATCACGTATTTTCCATTT
GTTTTTCGAACCCCTTCCCTTCCTGTCCTACTTTTCTTTCTTTGTCACTC
GGGCCCCGTCGCTCCCTATTTGGCGGGGGGGGCCTACCTCTTCCCCTAGT
ACTGCTTGTCCGGGAATGGCGCACCACGTTTGACTGCCCTCTTTCAACAC
GAGCGTCTGCTGTGCGTGAATGCCTCAAACACAGCAGTAGTACATCAAAC
CAGACGCTCCCCACATGA
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