mRNA_S-firma_F_contig1047.661.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1047.661.1
Unique NamemRNA_S-firma_F_contig1047.661.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A6H5KI79_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI79_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.310e-9
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = -3 
Query:  350 KNADMSEDMQQDAVDCASQALEKYNIEKASHVML 451
            KNADMSEDMQQDAVDCASQALEKYNIEKA H  L
Sbjct:    9 KNADMSEDMQQDAVDCASQALEKYNIEKARHCRL 42
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BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A482S8N2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8N2_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 3.510e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCASQALEKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCASQALEKYNIEK 36
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BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: D7FVR3_ECTSI (Dynein light chain n=2 Tax=Stramenopiles TaxID=33634 RepID=D7FVR3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 8.290e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCASQALEKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCASQALEKYNIEK 36
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BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A3B4WRP6_SERLL (Dynein light chain n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WRP6_SERLL)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-7
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QALEKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQALEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A095C5V4_SCHHA (Dynein light chain n=3 Tax=Schistosoma TaxID=6181 RepID=A0A095C5V4_SCHHA)

HSP 1 Score: 55.5 bits (132), Expect = 1.530e-7
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QALEKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQALEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A8C9FDX9_PAVCR (Dynein light chain n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9FDX9_PAVCR)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QA+EKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQAMEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A671PD50_9TELE (Dynein light chain n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A671PD50_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QA+EKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQAMEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: B5X7R7_SALSA (Dynein light chain n=1 Tax=Salmo salar TaxID=8030 RepID=B5X7R7_SALSA)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QA+EKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQAMEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: D6RIN4_MOUSE (Dynein light chain n=1 Tax=Mus musculus TaxID=10090 RepID=D6RIN4_MOUSE)

HSP 1 Score: 54.7 bits (130), Expect = 1.940e-7
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QA+EKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQAMEKYNIEK 36
[Close]
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Match: A0A673M8U8_9TELE (Dynein light chain n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673M8U8_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 1.940e-7
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = -3 
Query:  368 KNADMSEDMQQDAVDCASQALEKYNIEK 451
            KNADMSEDMQQDAVDCA+QA+EKYNIEK
Sbjct:    9 KNADMSEDMQQDAVDCATQAMEKYNIEK 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1047.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI79_9PHAE4.310e-991.18Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A482S8N2_9ARCH3.510e-8100.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FVR3_ECTSI8.290e-8100.00Dynein light chain n=2 Tax=Stramenopiles TaxID=336... [more]
A0A3B4WRP6_SERLL1.210e-796.43Dynein light chain n=1 Tax=Seriola lalandi dorsali... [more]
A0A095C5V4_SCHHA1.530e-796.43Dynein light chain n=3 Tax=Schistosoma TaxID=6181 ... [more]
A0A8C9FDX9_PAVCR1.740e-792.86Dynein light chain n=1 Tax=Pavo cristatus TaxID=90... [more]
A0A671PD50_9TELE1.900e-792.86Dynein light chain n=2 Tax=Sinocyclocheilus TaxID=... [more]
B5X7R7_SALSA1.900e-792.86Dynein light chain n=1 Tax=Salmo salar TaxID=8030 ... [more]
D6RIN4_MOUSE1.940e-792.86Dynein light chain n=1 Tax=Mus musculus TaxID=1009... [more]
A0A673M8U8_9TELE1.940e-792.86Dynein light chain n=1 Tax=Sinocyclocheilus rhinoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1047contigS-firma_F_contig1047:8202..8654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.2718747-CDS-S-firma_F_contig1047:8201..86541622815581.2718747-CDS-S-firma_F_contig1047:8201..8654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1047 8202..8654 +
1696949432.1618712-CDS-S-firma_F_contig1047:8201..86541696949432.1618712-CDS-S-firma_F_contig1047:8201..8654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1047 8202..8654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1047.661.1prot_S-firma_F_contig1047.661.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1047 8202..8654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1047.661.1

>prot_S-firma_F_contig1047.661.1 ID=prot_S-firma_F_contig1047.661.1|Name=mRNA_S-firma_F_contig1047.661.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=151bp
GGGTDRAELEPTNTKKSPRGIEFVTKHHIRRILVHAWREERRQDFPHPTD
PIRSKNLLRFVHNTQSGRGTCIDANMYTSLEADVATFFVICGIVRVPYRL
LMLIHLETTRSSAWKPTTLHDLPSQCCTFPTPGTRSLQRPAACPRTCRHS
*
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mRNA from alignment at S-firma_F_contig1047:8202..8654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1047.661.1 ID=mRNA_S-firma_F_contig1047.661.1|Name=mRNA_S-firma_F_contig1047.661.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=453bp|location=Sequence derived from alignment at S-firma_F_contig1047:8202..8654+ (Sphaerotrichia firma ET2_F female)
GGGGGTGGTACGGACCGGGCCGAATTGGAGCCCACCAACACAAAAAAATC
GCCCAGGGGTATCGAGTTTGTCACAAAACACCATATTAGGCGGATATTGG
TGCATGCATGGCGCGAGGAGCGTAGGCAGGACTTCCCGCACCCAACAGAC
CCCATCAGAAGCAAAAACCTGTTGAGATTCGTACACAACACACAATCCGG
ACGAGGTACATGCATAGATGCAAATATGTATACCTCGCTCGAAGCCGATG
TTGCGACGTTTTTTGTGATTTGTGGTATTGTACGCGTACCGTACCGATTG
CTGATGCTGATACACCTCGAGACGACTCGCAGCTCGGCTTGGAAACCTAC
AACATTACATGACTTGCCTTCTCAATGTTGTACTTTTCCAACGCCTGGGA
CGCGCAGTCTACAGCGTCCTGCTGCATGTCCTCGGACATGTCGGCATTCT
TGA
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Coding sequence (CDS) from alignment at S-firma_F_contig1047:8202..8654+

>mRNA_S-firma_F_contig1047.661.1 ID=mRNA_S-firma_F_contig1047.661.1|Name=mRNA_S-firma_F_contig1047.661.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=906bp|location=Sequence derived from alignment at S-firma_F_contig1047:8202..8654+ (Sphaerotrichia firma ET2_F female)
GGGGGTGGTACGGACCGGGCCGAATTGGAGCCCACCAACACAAAAAAATC
GCCCAGGGGTATCGAGTTTGTCACAAAACACCATATTAGGCGGATATTGG
TGCATGCATGGCGCGAGGAGCGTAGGCAGGACTTCCCGCACCCAACAGAC
CCCATCAGAAGCAAAAACCTGTTGAGATTCGTACACAACACACAATCCGG
ACGAGGTACATGCATAGATGCAAATATGTATACCTCGCTCGAAGCCGATG
TTGCGACGTTTTTTGTGATTTGTGGTATTGTACGCGTACCGTACCGATTG
CTGATGCTGATACACCTCGAGACGACTCGCAGCTCGGCTTGGAAACCTAC
AACATTACATGACTTGCCTTCTCAATGTTGTACTTTTCCAACGCCTGGGA
CGCGCAGTCTACAGCGTCCTGCTGCATGTCCTCGGACATGTCGGCATTCT
TGAGGGGGTGGTACGGACCGGGCCGAATTGGAGCCCACCAACACAAAAAA
ATCGCCCAGGGGTATCGAGTTTGTCACAAAACACCATATTAGGCGGATAT
TGGTGCATGCATGGCGCGAGGAGCGTAGGCAGGACTTCCCGCACCCAACA
GACCCCATCAGAAGCAAAAACCTGTTGAGATTCGTACACAACACACAATC
CGGACGAGGTACATGCATAGATGCAAATATGTATACCTCGCTCGAAGCCG
ATGTTGCGACGTTTTTTGTGATTTGTGGTATTGTACGCGTACCGTACCGA
TTGCTGATGCTGATACACCTCGAGACGACTCGCAGCTCGGCTTGGAAACC
TACAACATTACATGACTTGCCTTCTCAATGTTGTACTTTTCCAACGCCTG
GGACGCGCAGTCTACAGCGTCCTGCTGCATGTCCTCGGACATGTCGGCAT
TCTTGA
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