mRNA_S-firma_F_contig10460.653.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10460.653.1
Unique NamemRNA_S-firma_F_contig10460.653.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A8J1T4Y8_OWEFU (Ofus.G01363 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T4Y8_OWEFU)

HSP 1 Score: 238 bits (607), Expect = 2.140e-75
Identity = 111/175 (63.43%), Postives = 139/175 (79.43%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+ GHL++ DFGLARV  + T   Y+HQVATRWYRAPELL+GAR+YD   DLWAVG +FGE+L  +PLFPGENDI+Q+  V+++LGTP  ++WPG+S+LPD+NKISFP  PP+    VLP AS  ALSLL K LVY   +RISA++AL DP+FFTEPLP   ++LP
Sbjct:  127 DLKPANLLISSKGHLKIADFGLARVFQNDTGRLYSHQVATRWYRAPELLYGARKYDEGCDLWAVGCIFGEMLNSSPLFPGENDIEQLCCVLRILGTPNEKIWPGMSELPDYNKISFPENPPIPMEEVLPDASKEALSLLKKFLVYPSTKRISAKEALLDPYFFTEPLPAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A8B6BJB8_MYTGA (Cell cycle related kinase n=3 Tax=Pteriomorphia TaxID=6545 RepID=A0A8B6BJB8_MYTGA)

HSP 1 Score: 237 bits (604), Expect = 6.080e-75
Identity = 110/175 (62.86%), Postives = 140/175 (80.00%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV  +  +  Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG +FGELL  +PLFPGENDI+Q+  V++VLGTP  ++WPG+S+LPD+NKI+FP   P+ F  ++P AS  AL LL K+LVY   +RISA+DAL  P+FFTEPLP   ++LP
Sbjct:  127 DLKPANLLISSTGHLKIADFGLARVFQNEGNRQYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCIFGELLNTSPLFPGENDIEQLCCVLRVLGTPNEKIWPGISELPDYNKITFPENKPIPFEEIVPDASPEALDLLKKVLVYPSKQRISAKDALLHPYFFTEPLPAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: UPI001EE5A999 (LOW QUALITY PROTEIN: cyclin-dependent kinase 20-like n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EE5A999)

HSP 1 Score: 236 bits (602), Expect = 1.260e-74
Identity = 111/175 (63.43%), Postives = 138/175 (78.86%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV  +  D  Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG +FGELL ++PLFPGE DI+Q+  V++VLGTP  E WPG++ LPD++KISFP  PP+ F  +LP AS  AL LL K LVY   +RISA++AL  P+FFTEPLP   ++LP
Sbjct:  127 DLKPANLLISSTGHLKIADFGLARVFENKRDRQYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCIFGELLNNSPLFPGETDIEQLVYVLRVLGTPNKETWPGMTDLPDYHKISFPYNPPIPFEXILPDASPVALDLLKKFLVYPTKKRISAKEALLHPYFFTEPLPAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A210R3R5_MIZYE (Cyclin-dependent kinase 20 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210R3R5_MIZYE)

HSP 1 Score: 235 bits (599), Expect = 3.460e-74
Identity = 109/175 (62.29%), Postives = 139/175 (79.43%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV  +  D  Y+HQVATRWYRAPELL+GAR+YD  VD+WAVG +FGELL ++PLFPGENDI+Q+  V++VLGTP   +WPG+S+LPD+NKI+FP   P+    ++P A+  ALSLL KLLVY    RISA+DAL  P+FF+EPLP   ++LP
Sbjct:  127 DLKPANLLISSTGHLKIADFGLARVFQNKGDRQYSHQVATRWYRAPELLYGARKYDEGVDIWAVGCIFGELLNNSPLFPGENDIEQLCCVLRVLGTPNESIWPGISELPDYNKITFPDNQPIPLEEIVPDATHEALSLLKKLLVYPTKSRISAKDALLHPYFFSEPLPAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: UPI00193A5301 (cyclin-dependent kinase 20-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A5301)

HSP 1 Score: 235 bits (599), Expect = 5.070e-74
Identity = 109/176 (61.93%), Postives = 142/176 (80.68%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSP-TDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV+ +  +D  Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG +FGE+L ++PLFPGENDI+Q+  V++VLGTP   +WPG+S LPD+NKI+FP  PP+    ++P AS+ AL+LL K LVY   ERI+A++AL  P+FFTEPLP   ++LP
Sbjct:  145 DLKPANLLISSTGHLKIADFGLARVYQNQDSDRQYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCIFGEMLNNSPLFPGENDIEQLCCVLRVLGTPNESIWPGMSSLPDYNKITFPDNPPIPLEEIVPDASSEALNLLKKFLVYPSKERIAAKEALLHPYFFTEPLPAHHSELP 320
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A1S3JD82_LINUN (cyclin-dependent kinase 20 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JD82_LINUN)

HSP 1 Score: 234 bits (597), Expect = 6.740e-74
Identity = 110/175 (62.86%), Postives = 139/175 (79.43%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV  +  +  Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG + GELL ++PLFPGENDI+Q+  V++VLGTPT   WPG+S+LPD+NKI+FP  PP+ F  +LP +SA AL LL + LVY   ERISA++AL  P+FF EPLP   ++LP
Sbjct:  127 DLKPANLLISSTGHLKIADFGLARVFQNEGNRQYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCILGELLNNSPLFPGENDIEQLCCVLRVLGTPTEATWPGMSELPDYNKITFPENPPIPFELILPDSSAIALDLLKRFLVYPSKERISAKEALLHPYFFMEPLPAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A1Y2C6K1_9FUNG (Pkinase-domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C6K1_9FUNG)

HSP 1 Score: 233 bits (594), Expect = 1.090e-73
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S TG L+L DFGLARVH +    PY+HQVATRWYR+PELL+GAR+YD  VDLWA G +FGELL HAPLFPG+NDIDQ++ V+ +LGTPT+E WP +  LPD+NKI FP  PP+ F  + P AS  A+SLL K LVY   +RI A +AL D +FF++PLP    +LP
Sbjct:  126 DLKPANLLISPTGVLKLADFGLARVHANEGGRPYSHQVATRWYRSPELLYGARKYDIGVDLWACGCIFGELLNHAPLFPGQNDIDQLYCVLSILGTPTSEEWPDLETLPDYNKIQFPHHPPIQFEKICPDASVGAISLLKKFLVYPSKKRIFANEALLDSYFFSKPLPAHHLELP 300
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A6P8IES1_ACTTE (cyclin-dependent kinase 20-like n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8IES1_ACTTE)

HSP 1 Score: 233 bits (595), Expect = 1.920e-73
Identity = 107/175 (61.14%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TGHL++ DFGLARV  +  D  Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG +FGELL ++PLFPGENDI+Q+  V++ LGTP  E+WPG+++LPD+NKI+FP +PP+    ++P AS  A+ LL K LVY    RI A +AL  P+FFTEPLP   ++LP
Sbjct:  133 DLKPANLLISSTGHLKIADFGLARVFSNEGDRLYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCIFGELLNNSPLFPGENDIEQLCCVLRTLGTPNEEIWPGMTELPDYNKITFPDMPPIPLEKIVPDASLEAVDLLKKFLVYPSKSRIPASEALIHPYFFTEPLPAHHSELP 307
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A8B7YZF9_ACAPL (cyclin-dependent kinase 20-like n=3 Tax=Asteroidea TaxID=7588 RepID=A0A8B7YZF9_ACAPL)

HSP 1 Score: 232 bits (592), Expect = 3.510e-73
Identity = 110/175 (62.86%), Postives = 136/175 (77.71%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S TGHL++ DFGLARV  +     Y+HQVATRWYRAPELL+GAR+YD  VDLWAVG +FGELL ++PLFPGENDI+Q+  V++VLGTPT + WPG+ +LPD+NKI+FP  PP+ F  V+P AS  AL LL K LVY   +RISA +AL  P+FFTEPL    ++LP
Sbjct:  127 DLKPANLLISETGHLKIADFGLARVFSNEEGRQYSHQVATRWYRAPELLYGARKYDEGVDLWAVGCIFGELLNNSPLFPGENDIEQLCCVLRVLGTPTEKTWPGMEQLPDYNKITFPENPPIPFEEVVPDASPEALDLLKKFLVYPSKQRISAAEALLHPYFFTEPLLAHHSELP 301
[Close]
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Match: A0A1S8VS87_9FUNG (Cyclin-dependent kinase 20 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VS87_9FUNG)

HSP 1 Score: 232 bits (591), Expect = 3.920e-73
Identity = 107/176 (60.80%), Postives = 136/176 (77.27%), Query Frame = 1 
Query:    1 DLKPANLLVSTTGHLRLGDFGLARVH-VSPTDEPYTHQVATRWYRAPELLFGARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAELWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAERISAEDALCDPWFFTEPLPIDPADLP 525
            DLKPANLL+S+TG L+L DFGLARVH   P+  PY+HQVATRWYRAPELL+GAR YD  VDLWAVG +FGELL H+PLFPG+NDIDQ++ V+ +LG+PT+E+WP + KLPD+ KI FP+LPP+   ++ P AS  A+ LL + L+Y    RI+A +AL DP+FF  PLP    +LP
Sbjct:  126 DLKPANLLISSTGILKLADFGLARVHSTDPSCRPYSHQVATRWYRAPELLYGARIYDTGVDLWAVGCIFGELLNHSPLFPGQNDIDQLYCVIGILGSPTSEVWPELDKLPDYGKIQFPSLPPIPLENICPDASTDAVRLLKRFLIYASISRITAREALLDPYFFNRPLPAHHLELP 301
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10460.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J1T4Y8_OWEFU2.140e-7563.43Ofus.G01363 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A8B6BJB8_MYTGA6.080e-7562.86Cell cycle related kinase n=3 Tax=Pteriomorphia Ta... [more]
UPI001EE5A9991.260e-7463.43LOW QUALITY PROTEIN: cyclin-dependent kinase 20-li... [more]
A0A210R3R5_MIZYE3.460e-7462.29Cyclin-dependent kinase 20 n=2 Tax=Pectinidae TaxI... [more]
UPI00193A53015.070e-7461.93cyclin-dependent kinase 20-like n=1 Tax=Styela cla... [more]
A0A1S3JD82_LINUN6.740e-7462.86cyclin-dependent kinase 20 n=1 Tax=Lingula unguis ... [more]
A0A1Y2C6K1_9FUNG1.090e-7361.71Pkinase-domain-containing protein n=1 Tax=Rhizoclo... [more]
A0A6P8IES1_ACTTE1.920e-7361.14cyclin-dependent kinase 20-like n=2 Tax=Actiniaria... [more]
A0A8B7YZF9_ACAPL3.510e-7362.86cyclin-dependent kinase 20-like n=3 Tax=Asteroidea... [more]
A0A1S8VS87_9FUNG3.920e-7360.80Cyclin-dependent kinase 20 n=1 Tax=Batrachochytriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10460contigS-firma_F_contig10460:1353..1944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000008425
Preferred nameCDK20
PFAMsPkinase
Max annot lvl33208|Metazoa
KEGG koko:K08817,ko:K10267,ko:K18086
KEGG Pathwayko00562,ko01100,ko04070,ko04140,map00562,map01100,map04070,map04140
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019912,GO:0022607,GO:0030030,GO:0030031,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0033674,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0060271,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0097472,GO:0098772,GO:0120031,GO:0120036,GO:0140096,GO:1901564,GO:1904029,GO:1904031
Evalue2.28e-74
EggNOG OGsKOG0659@1|root,KOG0659@2759|Eukaryota,38BVE@33154|Opisthokonta,3BE0Q@33208|Metazoa,3CZZT@33213|Bilateria,48135@7711|Chordata
EC2.7.11.22,3.1.3.64,3.1.3.95
Descriptioncyclin-dependent protein kinase activating kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.8495946-CDS-S-firma_F_contig10460:1352..15741622815580.8495946-CDS-S-firma_F_contig10460:1352..1574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10460 1353..1574 -
1696949431.9471648-CDS-S-firma_F_contig10460:1352..15741696949431.9471648-CDS-S-firma_F_contig10460:1352..1574Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10460 1353..1574 -
1622815580.8609543-CDS-S-firma_F_contig10460:1635..19441622815580.8609543-CDS-S-firma_F_contig10460:1635..1944Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10460 1636..1944 -
1696949431.9602125-CDS-S-firma_F_contig10460:1635..19441696949431.9602125-CDS-S-firma_F_contig10460:1635..1944Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10460 1636..1944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10460.653.1prot_S-firma_F_contig10460.653.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10460 1353..1944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10460.653.1

>prot_S-firma_F_contig10460.653.1 ID=prot_S-firma_F_contig10460.653.1|Name=mRNA_S-firma_F_contig10460.653.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=177bp
DLKPANLLVSTTGHLRLGDFGLARVHVSPTDEPYTHQVATRWYRAPELLF
GARRYDASVDLWAVGAVFGELLGHAPLFPGENDIDQIFRVMQVLGTPTAE
LWPGVSKLPDFNKISFPALPPVSFASVLPSASASALSLLSKLLVYNPAER
ISAEDALCDPWFFTEPLPIDPADLPA*
back to top

mRNA from alignment at S-firma_F_contig10460:1353..1944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10460.653.1 ID=mRNA_S-firma_F_contig10460.653.1|Name=mRNA_S-firma_F_contig10460.653.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=592bp|location=Sequence derived from alignment at S-firma_F_contig10460:1353..1944- (Sphaerotrichia firma ET2_F female)
GACCTGAAGCCTGCCAACCTCCTGGTGAGCACCACGGGGCATCTCCGCCT
CGGAGATTTTGGCTTGGCCAGGGTGCACGTGTCCCCGACGGACGAGCCCT
ACACGCACCAGGTCGCCACCCGGTGGTACCGCGCTCCTGAGCTGCTGTTT
GGCGCTCGGCGTTACGATGCCAGCGTTGACCTGTGGGCCGTGGGGGCAGT
TTTTGGAGAGCTCCTTGGCCACGCCCCCCTCTTCCCCGGCGAAAACGACA
TTGATCAAATCTTTAGGGTCATGCAGGTGCTTGGGACGCCCACGGCGGAG
CTGTGGCCGGTGAGCCTGTGTGCTCCTCCGTGTCACGCTTTCTTATTCTT
CATTCGTGTGTGTTATCTAGGGCGTCTCCAAGCTCCCCGATTTCAACAAG
ATCTCCTTCCCCGCGCTCCCTCCGGTCTCCTTCGCATCAGTTTTGCCGTC
TGCCTCCGCCTCTGCGCTCTCCCTCCTGTCCAAGCTGCTGGTGTACAACC
CTGCTGAGCGCATCAGTGCGGAAGACGCTCTTTGCGACCCCTGGTTCTTC
ACGGAGCCGCTCCCCATTGACCCCGCCGACTTGCCGGCGTAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10460:1353..1944-

>mRNA_S-firma_F_contig10460.653.1 ID=mRNA_S-firma_F_contig10460.653.1|Name=mRNA_S-firma_F_contig10460.653.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1062bp|location=Sequence derived from alignment at S-firma_F_contig10460:1353..1944- (Sphaerotrichia firma ET2_F female)
GACCTGAAGCCTGCCAACCTCCTGGTGAGCACCACGGGGCATCTCCGCCT
CGGAGATTTTGGCTTGGCCAGGGTGCACGTGTCCCCGACGGACGAGCCCT
ACACGCACCAGGTCGCCACCCGGTGGTACCGCGCTCCTGAGCTGCTGTTT
GGCGCTCGGCGTTACGATGCCAGCGTTGACCTGTGGGCCGTGGGGGCAGT
TTTTGGAGAGCTCCTTGGCCACGCCCCCCTCTTCCCCGGCGAAAACGACA
TTGATCAAATCTTTAGGGTCATGCAGGTGCTTGGGACGCCCACGGCGGAG
CTGTGGCCGGACCTGAAGCCTGCCAACCTCCTGGTGAGCACCACGGGGCA
TCTCCGCCTCGGAGATTTTGGCTTGGCCAGGGTGCACGTGTCCCCGACGG
ACGAGCCCTACACGCACCAGGTCGCCACCCGGTGGTACCGCGCTCCTGAG
CTGCTGTTTGGCGCTCGGCGTTACGATGCCAGCGTTGACCTGTGGGCCGT
GGGGGCAGTTTTTGGAGAGCTCCTTGGCCACGCCCCCCTCTTCCCCGGCG
AAAACGACATTGATCAAATCTTTAGGGTCATGCAGGTGCTTGGGACGCCC
ACGGCGGAGCTGTGGCCGGGCGTCTCCAAGCTCCCCGATTTCAACAAGAT
CTCCTTCCCCGCGCTCCCTCCGGTCTCCTTCGCATCAGTTTTGCCGTCTG
CCTCCGCCTCTGCGCTCTCCCTCCTGTCCAAGCTGCTGGTGTACAACCCT
GCTGAGCGCATCAGTGCGGAAGACGCTCTTTGCGACCCCTGGTTCTTCAC
GGAGCCGCTCCCCATTGACCCCGCCGACTTGCCGGCGTAGGGCGTCTCCA
AGCTCCCCGATTTCAACAAGATCTCCTTCCCCGCGCTCCCTCCGGTCTCC
TTCGCATCAGTTTTGCCGTCTGCCTCCGCCTCTGCGCTCTCCCTCCTGTC
CAAGCTGCTGGTGTACAACCCTGCTGAGCGCATCAGTGCGGAAGACGCTC
TTTGCGACCCCTGGTTCTTCACGGAGCCGCTCCCCATTGACCCCGCCGAC
TTGCCGGCGTAG
back to top