mRNA_S-firma_F_contig1046.650.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig1046.650.1
Unique Name	mRNA_S-firma_F_contig1046.650.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A835Z4N5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N5_9STRA)

HSP 1 Score: 243 bits (620), Expect = 8.860e-75
Identity = 127/258 (49.22%), Postives = 186/258 (72.09%), Query Frame = 3

Query:   75 MAVSDETKAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIK 848
            M+ +D+  AIAE KK AGN AFA KD  EA+RLY+EAI+L+ S+++Y SNRSACYA  G H++A ++A+ CI +NP F+KGYYRL+ AQ ++GE+D AL+ V  GL ++P N DL RQ R +  KK+AA+S  R GG   PG   LD Q   E +ELS Q  +T+RELAEV A LQ   R+++R  LT+ E+  +G    +Y++VGK+F+  +K+EI  LLD +A +++KSE QL+ K++YL++RL S+++NL+E+++
Sbjct:    1 MSSTDDINAIAEGKKAAGNAAFASKDYSEAIRLYTEAIQLNDSNHVYYSNRSACYASLGQHDEAAKDAQKCIELNPAFVKGYYRLSAAQLELGEVDKALEAVTEGLKKEPSNADLTRQLRVVKGKKAAAASKARQGGGGAPGG--LDKQTFEEIRELSDQSEVTQRELAEVSANLQGCLRDQRRAQLTKTEVAGLGGDARLYRSVGKVFMLNSKKEIDTLLDAQATERAKSEEQLKGKKAYLENRLNSQKTNLNELLR 256

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A7S2FHS0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHS0_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.670e-64
Identity = 117/256 (45.70%), Postives = 169/256 (66.02%), Query Frame = 3

Query:   78 AVSDETKAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEII 845
            A+S +    AEAKKK GNDAFAKK+ + A+  YSEAIELDP ++IY SNRS CYA  G   +A  +AE C+++ P F+KGY+R+A AQ +MG++DAA+ T+K GL +D  + DL    R + +KK AA ++ R         GR+D     E QELS Q   T REL+EV A+LQ   RE+K   +T GE+D+V D TP+Y+AVGKMF+   K+++   L  + ED  K + +L ++++YLQ RL S+++NL +++
Sbjct:    9 AMSSDNLVAAEAKKKEGNDAFAKKEYEAAIGFYSEAIELDPQNHIYYSNRSLCYAESGKFTEALADAEQCVKLEPSFVKGYHRVANAQFEMGQMDAAIATIKTGLQKDTGSKDLTNLLRKIRSKKQAAQAAAR------RPQGRMDENTQKEVQELSEQYQATGRELSEVNAKLQGAMREQKATAITIGEVDQVTDETPLYRAVGKMFMLSGKDDVKTSLSNEMEDVEKRKTELTSRRTYLQRRLQSQEANLKDLM 258

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: D8LSQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ2_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 4.450e-59
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 3

Query:   75 MAVSDETKAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPK 407
            M VS+E KAIAEAK+KAGNDAFAKKDLDEA+RLYSEAIELDPSSYIYRSNRSACYALQG HE AKEEAEACI+INP F KGYYRLATAQT+MGE+DAAL+TVKAGL RDPK
Sbjct:    1 MGVSEENKAIAEAKRKAGNDAFAKKDLDEAVRLYSEAIELDPSSYIYRSNRSACYALQGKHEMAKEEAEACIKINPDFTKGYYRLATAQTEMGEMDAALETVKAGLGRDPK 111

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A7S2SWL7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWL7_9STRA)

HSP 1 Score: 199 bits (507), Expect = 7.110e-58
Identity = 103/251 (41.04%), Postives = 170/251 (67.73%), Query Frame = 3

Query:  105 AEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKNIQ 857
            AE +KK GN+AFAKKD ++A++ YSEAI+LDP +++Y SNRS C+A +    +AK++AE C+++ P F+KGY+RLA AQ ++GE+DAA  T++ GL +DP   DL R  R +  KK+A +S+ +G   +      +   +  E +E+S Q   T R+L EV A+L+AT +E++R  +   E++ + + TP+YQ++GKMF+ + +EEI + L   AE + K  A L++++ YLQ RL S++ N+ ++ +++Q
Sbjct:   17 AEEQKKLGNEAFAKKDFEKAIQFYSEAIKLDPQNHVYYSNRSLCFAEKKRFAEAKQDAEQCVKLEPTFVKGYHRLANAQYELGELDAAASTIREGLKKDPNMPDLSRLLRKIKAKKAAIASARKGKQTN------VSESMRKEIEEMSEQYKQTGRDLQEVRARLEATAKEQRRIAVMSNEVEHLPEATPLYQSIGKMFMLRPREEIKSTLTENAEGQEKRLADLKSREQYLQRRLHSQEENMKDLFQSLQ 261

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A6U4EFJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EFJ5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.130e-51
Identity = 106/271 (39.11%), Postives = 161/271 (59.41%), Query Frame = 3

Query:   63 TIEEMAVSDETKAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSA-----ASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKNIQA 860
            + +E    +   A A AKK+ GN+A+A KD D A+ LYSEAI LDP S++Y SNR+A +  +G + +A+ +A  C+R  P F+KGYYRLA AQ + G++D A  ++KAGLN D  N DL +Q R +  KK++      + +GRGGG +GP   + D     E  EL      T+REL++V+++ + T  + K+  +TR ++  + +   + + +GKMF+   K EI   L    E   K +A+L  KQ YL  RL S++ NL EI+ N Q+
Sbjct:    2 SAQESKTGEGKMAQAAAKKQEGNEAYAAKDFDRAIALYSEAIALDPGSHVYYSNRAAVHHAKGEYTQAESDARECLRRKPDFVKGYYRLAQAQIEQGQLDEAEKSLKAGLNVDNGNSDLAKQLRLVRAKKASKGRQGGTKAGRGGGGAGP---KFDESTAQELTELGEAYQQTQRELSQVQSRQRMTAIDLKKVEITRQQVSMLDENAHILRGIGKMFMRSDKNEIITSLGESKEKGEKHQAELMNKQKYLARRLESQERNLKEIMANAQS 269

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A6U1NHW5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NHW5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.390e-45
Identity = 96/250 (38.40%), Postives = 153/250 (61.20%), Query Frame = 3

Query:  102 IAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKN 851
            IA+AKKKAGN+AFA K+ + A++LYSEAIELD S++++ SNRSACYA + +   A E+A+  I ++P F+KGYYRL  AQ +MGE   A  TV+ GL  D  + DLQ+  R +  +K+ A  +G+ G        ++D     E  EL  ++  T+ EL +   +L   +++ +R  LT   L++    T  Y+A+GKMFL   + E+   L+ + E     E ++  +Q+YL+ RL S+Q+N +++++N
Sbjct:   11 IADAKKKAGNEAFAAKNYERAIKLYSEAIELDSSNHLFFSNRSACYAAKRDWTSAAEDAKKIIELSPSFVKGYYRLGLAQMEMGEFGPAAATVRKGLELDNGSSDLQKLLRLIKARKAQA--AGKRGESGMTRQQKMDEATRKEILELQEEMQKTQNELRQAGLRLNHCRKDLRRTTLTFSNLEQTPHLTTAYRAIGKMFLRCERPEVMTYLEQQTEKGKDMETKILGQQAYLERRLKSQQANYEDLVEN 258

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A7S2CYH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYH7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.600e-45
Identity = 95/249 (38.15%), Postives = 150/249 (60.24%), Query Frame = 3

Query:  105 AEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKN 851
            AEAKKK GNDAFAKKD   A+ LYSEAIELDP ++IY SNRSACYA + +   + ++A+ C++I P F KGYYRLA AQ ++G  D A+ T++ GL +DP + DL R  + +  K                            +Q+       T+REL EV+ +L ++QRE+K   LT  +++ V +   MY++VGKMF+   K ++  +L  + + + K++ +L +++ YLQ R+ S++ N+ ++++N
Sbjct:    8 AEAKKKLGNDAFAKKDYKIAIELYSEAIELDPQNHIYYSNRSACYAAEKDFAGSMKDAQMCVKIEPSFAKGYYRLAVAQLELGSPDEAVSTIRDGLKQDPGHKDLARLLQKM--KXXXXXXXXXXXXXXXXXXXXXXXXXXXSYQQ-------TERELQEVQGRLMSSQREQKMISLTSKQIENVPETNKMYRSVGKMFMLTPKADMEGILQEQGQTEKKTQTELMSRRKYLQRRITSQEENIKDLMQN 247

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A7S0BYP4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYP4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.580e-45
Identity = 97/257 (37.74%), Postives = 152/257 (59.14%), Query Frame = 3

Query:   96 KAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKK-----SAASSSGRGGGRSGP-GAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGD--GTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEI 842
            K++AE KK+ GN AFA K+ +EA+ LY+EAI+ +P++++Y SNR+A Y      + +  +A+ CI ++P F+KGYYRLATAQ ++ ++D A  T+K GLN DP N  L +Q R +  KK     + A  +   G  + P   G +D  V  E  +L  Q   T RE   V A +   QRE++   LT+ EL+++     + MY+++GKMFL   +E I   L    +D++K E  L+ K  YL+ R+ S++ N+ E+
Sbjct:   10 KSLAEQKKELGNKAFASKNYEEAIALYTEAIKCEPNNHVYFSNRAASYGSISKWDSSASDAKKCIELDPTFVKGYYRLATAQIELNDLDGAHSTIKQGLNVDPSNNQLSKQLRIVNGKKKEIAKAIAKKAKSAGNNAAPRSVGNVDSSVSQELMDLQEQYISTNREYNTVTAHITKAQREQRTNELTKSELEKLPQESSSKMYRSIGKMFLLSGREAIMDHLGTAMKDEAKKEVDLKQKLDYLERRIKSQRQNIQEL 266

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A7S3P8D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P8D6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.400e-45
Identity = 97/248 (39.11%), Postives = 149/248 (60.08%), Query Frame = 3

Query:  117 KKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMT-KKSAASSSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKNIQ 857
            K+ GN AF+ KD  +A+  YSEAI++D S++++ SNRSA YA  G  EK+ E+A+  IR++P F+KGYYRLATAQ ++ E DAA  T++ GL  +  N  L +Q+R +   KKSA ++  R   +     G +DP    E  EL VQ     REL  ++       RE K    T+ +L  + + +  Y++VGKMFL Q++EEI   LD   E+ SK E  L+ K  YL+ ++ S++ N++E++ + +
Sbjct:    9 KELGNQAFSAKDFAKAIERYSEAIKIDASNHVFFSNRSASYAGIGKWEKSAEDAKETIRLDPTFLKGYYRLATAQIELKEFDAAAATIRQGLGVEANNPQLLKQQRMVQQLKKSAEAAEKR---KQTMPVGTMDPSTSSELNELQVQYMQMNRELETIKVDRARVDRELKLAEFTKTDLGELPETSACYRSVGKMFLRQSREEIVTHLDKNTEEASKMETTLKQKAEYLEKKMKSQRQNIEELVTSSE 253

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BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Match: A0A6V2AJX7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AJX7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.210e-43
Identity = 102/264 (38.64%), Postives = 156/264 (59.09%), Query Frame = 3

Query:  105 AEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSNRSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALDTVKAGLNRDPKNGDLQRQKRTLMTKKSAAS-------------SSGRGGGRSGPGAGRLDPQVILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDR--VGDGTPMYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQSNLDEIIKN 851
            AE KK+ GN AF  K  DEA++ Y+EAI+LD ++++Y SNRSA +  +G+   A  +A+ CI++NP F+KGYYRLATAQT++G  DAA+ T+K G+N +P N  L +  R +  K++ A              S+  G G +   A   D + +L+ QE   Q   + RE   V+A +  +QRE K   LT+ EL+   V +   MY+ +GKMF+  T+ +I   LD   E++SK E  L+ K  YL+ ++ S+Q N+ E+ K+
Sbjct:    6 AEEKKELGNKAFGSKSYDEAIKHYTEAIQLDATNHVYFSNRSASHGGKGDWADAATDAKECIKLNPSFVKGYYRLATAQTELGNWDAAIATIKQGMNVEPDNSQLSKLLRQVKAKRANAKRAXXXXXXXXXXXSNTSGVGPTTSFASTTDRE-LLDLQE---QFITSNREYNTVKANIHKSQREVKMNELTKAELETIPVTEDAKMYRGIGKMFMLSTRGDIMNHLDTCVEEESKREESLKNKAEYLERKMKSQQLNIQELTKS 265

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig1046.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z4N5_9STRA	8.860e-75	49.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2FHS0_9STRA	3.670e-64	45.70	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
D8LSQ2_ECTSI	4.450e-59	87.39	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2SWL7_9STRA	7.110e-58	41.04	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A6U4EFJ5_9STRA	4.130e-51	39.11	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A6U1NHW5_9STRA	2.390e-45	38.40	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2CYH7_9STRA	2.600e-45	38.15	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S0BYP4_9STRA	6.580e-45	37.74	Hypothetical protein n=1 Tax=Proboscia inermis Tax...	[more]
A0A7S3P8D6_9STRA	7.400e-45	39.11	Hypothetical protein (Fragment) n=1 Tax=Amphora co...	[more]
A0A6V2AJX7_9STRA	3.210e-43	38.64	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig1046	contig	S-firma_F_contig1046:8435..14179 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	2880.D8LSQ2
Max annot lvl	2880.D8LSQ2\|-
Evalue	3.92e-61
EggNOG OGs	COG0457@1\|root,KOG0548@2759\|Eukaryota
Description	positive regulation of catalytic activity in other organism involved in symbiotic interaction
COG category	J
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-15_003030.1
Exons	9
Model size	1264
Cds size	795
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815580.4161959-UTR-S-firma_F_contig1046:8434..8829	1622815580.4161959-UTR-S-firma_F_contig1046:8434..8829	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 8435..8829 -
1696949431.569997-UTR-S-firma_F_contig1046:8434..8829	1696949431.569997-UTR-S-firma_F_contig1046:8434..8829	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 8435..8829 -
1622815580.5285065-UTR-S-firma_F_contig1046:13725..13750	1622815580.5285065-UTR-S-firma_F_contig1046:13725..13750	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 13726..13750 -
1696949431.6950586-UTR-S-firma_F_contig1046:13725..13750	1696949431.6950586-UTR-S-firma_F_contig1046:13725..13750	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 13726..13750 -
1622815580.5415845-UTR-S-firma_F_contig1046:14130..14179	1622815580.5415845-UTR-S-firma_F_contig1046:14130..14179	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 14131..14179 -
1696949431.7083175-UTR-S-firma_F_contig1046:14130..14179	1696949431.7083175-UTR-S-firma_F_contig1046:14130..14179	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1046 14131..14179 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig1046.650.1	prot_S-firma_F_contig1046.650.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig1046 8830..13725 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig1046:8435..14179-
coding sequence from alignment at S-firma_F_contig1046:8435..14179-

protein sequence of mRNA_S-firma_F_contig1046.650.1

>prot_S-firma_F_contig1046.650.1 ID=prot_S-firma_F_contig1046.650.1|Name=mRNA_S-firma_F_contig1046.650.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=265bp
MAVSDETKAIAEAKKKAGNDAFAKKDLDEALRLYSEAIELDPSSYIYRSN
RSACYALQGNHEKAKEEAEACIRINPGFIKGYYRLATAQTDMGEIDAALD
TVKAGLNRDPKNGDLQRQKRTLMTKKSAASSSGRGGGRSGPGAGRLDPQV
ILEFQELSVQLGLTKRELAEVEAQLQATQREKKRGVLTRGELDRVGDGTP
MYQAVGKMFLSQTKEEITALLDGKAEDKSKSEAQLQAKQSYLQSRLASEQ
SNLDEIIKNIQAQG*

mRNA from alignment at S-firma_F_contig1046:8435..14179-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig1046.650.1 ID=mRNA_S-firma_F_contig1046.650.1|Name=mRNA_S-firma_F_contig1046.650.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5745bp|location=Sequence derived from alignment at S-firma_F_contig1046:8435..14179- (Sphaerotrichia firma ET2_F female)
CGCATCGCAGCAAACAGAGAGAGGGGGAGAGAGATATAGCGTGAAAGAGG
TGCGTAGAAGCGTGAACAGATAGTTGTCAGGCAGAAGTGGGAATTGCAGC
CGTTGAAACACACGCAAACAGCAGTCGCTGCAACAGTCCTGTTTTCAAAA
CGTTGCTCGCCGCCGCAGACAAGTAGCATCTCCGGGCTTGCGATCCTTCG
CTACGGCCGTAGACACCCGAGAGTTTTGTGACGGCTTCGAGGCTGGACTT
TTAGGGTGTCTATGATGGCAGTTGCAACGAGCAGTGAAGGGCCAGCATAT
TCATCCTACTTACAGCTGTTGTTCCAACCTGGTGTTCCGTGCGCGGAAAC
CACGAGCCTGATCTATGATCCATGTGTCTACCTCCTTGCATCGGTCGCCT
TGCTCTGGAACGTGGTTTACGTGGCTTAGTCCCAGGCCAGGTACTATCGA
GGAGATGGCAGTTAGCGACGAAACCAAGGCGATTGCCGAGGCGAAGAAGA
AGTAAGTGGTTGTTTCCACCCTATCCATTGCCGGACACCAGTTCTGTATA
CGGAGTTTAACACCCCCCCTTCCCCGCTGTCGATTCGAAACGTATCGATT
TCAACGAGTCAGCAGTTAGTATACGAATTGGTGTGAAGTGCGACCGCCCG
TCATTCTTTTCTTGGCGAGTGCATGAATCACTAGCTCGGTGTTTTTTATT
TTGTTTTTTGGAAGAGTTGTCTCACCGATGTGCGGCAACCCCCCTTCGCC
TTGGCGATGTGCTGCTGCTGCCTTGCTTGCTCGCAGGGCGGGCAACGATG
CTTTCGCGAAGAAAGACCTCGACGAAGCGCTCCGCCTCTACTCCGAGGTG
GGTTATTGGAAGGAGGGTTGGTTCAGCTCCGCACGTCGAAAACAGCCAAA
AAATCTGTCCGCATAATACTGGGCAGCCGACTCGACGCACGCGCAACACT
TACCCTTGCACTCACCCAAGATCTAAACCACCAGAAAACGCGCAATTTAC
AAACTACGCTGCCCTTTTGTGGTCCAAGAGCAAGATTTTTTTCACACTTC
CGGTGATCGTACGGAAGATAACACACAAACGCTGAACAACATACCCCCTT
ACAAACTACGAAACTAAACAACCAACAAACCCAACGGATTGCGGATTTTG
TGCTGTTGGCTGGGACGGGGAGGGTTAGTGTGTGAACAACAGTCCCATGG
AACGATTTATTCACAGGACGGGCGTATACGGCTGATTTTTGTACAACAAA
TATTGAAAATTCTGGGCAGCGCGGGGGAGAACGGCGGCGGAGACAGGGGG
AGCCGTTGGACTTAATAGATATAAAGCACCCAAGCAAAGTATGGTACTAC
AATAGCAGTAGGATTTCTTCAATATATTTTCTACAGCCGTCAGCCGTATA
CGCCCGTCCTGTGAATAAGTCGTCCCGGCTGTTGTAACACACGAACCCTC
CCCGTCCAAGCCAACAGCACAAAATCCGCAATCCGTTGGGTTTGTTGGTT
GTTTAGTTTCGTACCAGGTAGTTTGCAAGGGGGTATGTTATTCAGATTTC
TTTGACTCGTATTTATTTTGTCGGAGGCTTCATCTCCCCCACGTTTAAAT
AATGATCTGCCCTACCCTCCCCGTTCTGTGCCCCGGGTTTGTTCTTGCAG
GCAATAGAGCTGGACCCGTCCAGCTACATCTACCGGTCGAATCGGAGCGC
CTGCTACGCCCTGCAGGGGAACCACGAGAAGGCCAAGGAGGAGGCGGAGG
CCTGCATCCGCATCAACCCGGGCTTCATCAAGGGCTACTATCGGTGAGGG
AAGGAGTAGGAGCGAGCCAAGCGTCGTTCGCGCCCTCTGCTCTGGCTGCG
CCCCAGGGCTGCTGTTGCGCCGTGTCCAGCCGGGCAGCCTGGGCGTTGTT
GTTGTTGTTGGTGGTGGTGGTGGTAGTGGTGGTGGAGGTGTCGGTGGTGC
TGCTGCTGCTGCTGATGTGTTCCCACCAATGGTTGGTGTGGTGCATCTCG
CAGTTCTGTAGCCTCCGTGTTGCGGATGCCGACGTTGATGTAATTCTGTC
GCAGGAGGTGCTGTTCGTTCTTCGTGTCTTCCATCCAAGCGAGCGAGGCG
TGGTTGTTTGGCGCCCCGTCCACCGCCTTTTGAAGGCAAATTGAGACTCG
AAATGCAGTACATGTGTGTGATGTGACAGAAGCGACCCCCATTTTTGTGC
TTCAGGTTGGCGACGGCTCAGACCGACATGGGGGAGATCGACGCAGCGCT
TGACACGGTCAAGGCGGGCCTCAACAGGGACCCAAGTGAGAGGACAGTAG
CACTTGGCAGCAGTCCCGATTGCGTTCGTTTCCAGGGAAAAAAGGGAAGT
CTTCGGCACGTACATTCCCCCGCAGAGTTTGCTCGATTTGACAAGGCCCG
AACGACGTGCTGCATGTTTCCGACGTTCACGTCGACCCTGGTGGGTTTGA
CCACCCTCGTTGTTGCGGCGCAATCAGCCTTTGATGGCCTCTTTGTCCAG
GGGGTGTGTCGCGGTGGAACGTTTGTGTGTGCAGCCTCCGCTAGCTAAGA
ATCAAAGATTCTTCGTTTTGGTGTTCGGTGTGGGTGATTCGGTGCTTGTT
TTGGTGGTCACGCTTGGTGGCACTGGTGGCATCGATTCTGTTGCTCTCGT
TTGATCGCTGGTGGTGGCATTTTTGGTGGGAACGCGTTGTTGGTATTTGG
TGCTGTCTGTTTCTTCACACCAAAAAGAACGGGAAACATGGCGCCAACCG
GCGATTGCCACCAGGATGGCCAGGTGTTGGCATACACTGTTCCGCGACGC
GCCGACGCTGACATCCACTGACAGAGCTCGCACACTCCGCTGCCGCCGAT
GTCGTCGTACACCTTGCAGAGAACGGAGACTTGCAGAGACAGAAGCGCAC
GCTGATGACGAAAAAGTCGGCGGCGTCTTCGTCGGGGCGGGGGGGCGGGA
GGAGTGGGCCCGGGGCGGGGAGGCTTGACCCGCAAGTCATCCTAGAGGTA
ACGTGGCCGTGATCGTTATTTCGTTGCTTGTGGTTGTCGTGCTGCTGCTG
CTGCTGCTGCTGCTGCTTTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTATTGTTGTTTGCCGTTAGTTGGAGAAGACTTCTTGGTCCCG
AACGCAACCCGTCGTTTCCCTTTCGGTGAAAAAATAACAGTTCCAGGAGC
TCTCCGTGCAGTTGGGGCTCACAAAGCGTGAGCTCGCGGAGGTGGAGGCA
CAGCTGCAGGCAACCCAGCGGGAAAAGAAGAGGGGGGTGCTGACAAGGGG
CGAGCTGGACAGGGTGGGAGACGGGACGCCAATGTACCAGGCCGTGGGTA
AGAAGGGCCAAGTCGAAGCATATGTTGTGGACGGACTATTGTAGTTGAGG
TCTGCCGATAATGGGGGTGTATAAGAGGCGCTCTTGAAGCCTGACTGCAG
CTCGAAGTCGTTGTTGTTTTACTCCCCACCGGTGAGCCGTGTTCAGCACA
AACTCGTTTCGTGGACCTGGAAAAAGCCTAGCTCGTGTCGTTGGAAATTG
GAAGCGGGAGTAACACCTGTTGGGCGTGGGAGATTCGAGTCCTTGGGTAC
TGTGTGGCTGTTTTTTTTCGTTTTGAGTATCGGGGTATGCGAAACTAGTC
TATTATGAACCCTCGGGGATCGGCCGCAATACAGGCCGAAATCTTGCTAT
TCACCGACTCTCGTTTTGATGTCAAGAAGCGGCTGCGGGCCGGTCCGAAC
AATGAATGTTTTGCAAGTTGAGCGTGAGTCAGCGTTTGCGGTACTAAGGG
GGTGCTGACGGTGGTTCTTATTTTTATACTTAAATCAAGATACTGAGGCC
GACTCTAACGAAAACCATCTTACCGTCGAAAGTCAACGGAATTCGGGCAT
GGAATCACTAGAGCATACCATGGAGAGGTCGCGTGTGTGTTGGCGCACTC
AGATCTGCTGCTGGAACGGAGATAGCGAAGGTCGCAGCAGTCGCTGGACT
GTCAACAAACGTTGTGACGGCTGTGCTTGCCGCCACGGGCCGTAACCTCC
CGAACTGCGGGTCCTCAGCAGTAGCTGGTGGTATCAGCTACTCAGTATTG
CTGTAGACCCGCAGTTCAGGAGATTGGGGTCCGTGGCGACGAGCACAGCA
GTGGGAGACAGGGTGTGTCGGTCAATTTGCGGAGAATCTCGGTCGCTGCT
ACTACTCGAGATGTCACCCCCAACGCGGCGGATTTGAGCGTTCCAACGCA
CACATGCCAGTGCTCTAGGGTGTTGCCTAGTGCTTCCATGTCTGAAACTC
GTTACCCTACCAAGGCAAACCTTAATTGAGCGCCCGCCGTCTTGGCTATT
TTGACTTGATTTTACACTGGTGGGATTTCTGTCTTGGTTTTGTTGGAAGA
GCTTGAAGTCCTTTTCTCCGACATTGGAAATTATTTCATTTGCTGCGTTG
CCGAGCGTTTCGTGTTTCGCAGACATGCCCTGAAGCAAGTGTCCCGTACG
AAAAATGAGCACTCGCGTGCGTGCCTCTTCAAACACCCTTTTATTTTCTC
ACGGAAAAATATTGTTTGCCGCGCCTGCTTCTAAACGAAGACCTTGCTGC
TCATCATAACAAACACCCCCTGCTTCGTATCCCTACCTCCGCTTGCGTGT
CCTGGTTTCGTGTGTTATTTTGTTCCCTGCCGGCGCCTGGGTGGGCTGGG
CGGGCGAGCAGGGAAGATGTTCTTGTCGCAAACAAAGGAGGAGATCACCG
CTCTCCTGGACGGGAAGGCAGAGGACAAGAGCAAGTCGGAGGCACAGCTC
CAGGTGGGGTGCAGTTCCGTAGCGCGATTCACGGATTTTGCTTTTGTTTT
CCGGACCCCCCATTGTTGCTTTTGTGGAGAGGGGGGGAGGGGCCAGGGGC
GTCGTCTCGTTTCCTCTCGTTCAGGTGTGACGGTGCTATGTATGTGTTCA
TCGGACCTTTGACCCTGGCATCCAGGCAAAAGACAAATTCGAGCGCGTCG
CCTTGATTGGTGCTCGTTGCTCGCTCGGCTTTTCTTCTTGGTGTTGATAC
TTGATGGGTTGGAGTTCTTGCTGTTGGCCTTGGTCTTCAGAAGTGCTGTG
ATCACTTCTTCTCGTCCGTCTCGGACCTTGACATGCTTTCTCCGGGGCGA
ATGCCTCAGAAGCCGCACCAATCACAACCCATTGGCGAGAACCGCGTTCC
CAGCCGCTCGAGGAACTGCTGTGTGTCTTGTCTCTCTGTCTACCTTGTTC
GTCGCCGCCGCAGGCCAAGCAGTCGTACCTCCAGAGCCGATTGGCTTCGG
AGCAGAGCAATCTGGACGAGATCATCAAGAACATCCAGGCTCAGGGATAG
ATTAGAGGGGGAAACAGACCCGCCCACCCCGTCAGCTTAAGTAAAGCATG
AACAAAGGCGTGGGTCAGGTTCGGGGGGAGAGGGCGCTGGCTTTTTTTCG
GTATTTCCTGTTTTGACGTGTGTTTGTCTCTTGGCCAACGCGTCTCAGCC
ACTTGGAGAGACGGGGCGCAAAGGGTGTGTGTGGGTTGGTTGAGCGGTGC
TCTGCAAGCACCGAAGGTAATCTCATCCATGTATGTAAAATATGGGAGAG
CAAGATGAACAAACGTGGGGCGCTTCATTTACGAGCTATGGCTTGCTACT
TGGTCCCTCCTAAGAGAGAAACGGCAGATCAGCGCTGTGAACTGTTGTTA
GCCCGGTTTGAAGTCCATCCGAAAGGACCTTCAATCGATGTCAAC

Coding sequence (CDS) from alignment at S-firma_F_contig1046:8435..14179-

>mRNA_S-firma_F_contig1046.650.1 ID=mRNA_S-firma_F_contig1046.650.1|Name=mRNA_S-firma_F_contig1046.650.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1590bp|location=Sequence derived from alignment at S-firma_F_contig1046:8435..14179- (Sphaerotrichia firma ET2_F female)
ATGGCAGTTAGCGACGAAACCAAGGCGATTGCCGAGGCGAAGAAGAAATG
GCAGTTAGCGACGAAACCAAGGCGATTGCCGAGGCGAAGAAGAAGGCGGG
CAACGATGCTTTCGCGAAGAAAGACCTCGACGAAGCGCTCCGCCTCTACT
CCGAGGGCGGGCAACGATGCTTTCGCGAAGAAAGACCTCGACGAAGCGCT
CCGCCTCTACTCCGAGGCAATAGAGCTGGACCCGTCCAGCTACATCTACC
GGTCGAATCGGAGCGCCTGCTACGCCCTGCAGGGGAACCACGAGAAGGCC
AAGGAGGAGGCGGAGGCCTGCATCCGCATCAACCCGGGCTTCATCAAGGG
CTACTATCGGCAATAGAGCTGGACCCGTCCAGCTACATCTACCGGTCGAA
TCGGAGCGCCTGCTACGCCCTGCAGGGGAACCACGAGAAGGCCAAGGAGG
AGGCGGAGGCCTGCATCCGCATCAACCCGGGCTTCATCAAGGGCTACTAT
CGGTTGGCGACGGCTCAGACCGACATGGGGGAGATCGACGCAGCGCTTGA
CACGGTCAAGGCGGGCCTCAACAGGGACCCAAGTTGGCGACGGCTCAGAC
CGACATGGGGGAGATCGACGCAGCGCTTGACACGGTCAAGGCGGGCCTCA
ACAGGGACCCAAAGAACGGAGACTTGCAGAGACAGAAGCGCACGCTGATG
ACGAAAAAGTCGGCGGCGTCTTCGTCGGGGCGGGGGGGCGGGAGGAGTGG
GCCCGGGGCGGGGAGGCTTGACCCGCAAGTCATCCTAGAGAGAACGGAGA
CTTGCAGAGACAGAAGCGCACGCTGATGACGAAAAAGTCGGCGGCGTCTT
CGTCGGGGCGGGGGGGCGGGAGGAGTGGGCCCGGGGCGGGGAGGCTTGAC
CCGCAAGTCATCCTAGAGTTCCAGGAGCTCTCCGTGCAGTTGGGGCTCAC
AAAGCGTGAGCTCGCGGAGGTGGAGGCACAGCTGCAGGCAACCCAGCGGG
AAAAGAAGAGGGGGGTGCTGACAAGGGGCGAGCTGGACAGGGTGGGAGAC
GGGACGCCAATGTACCAGGCCGTGGTTCCAGGAGCTCTCCGTGCAGTTGG
GGCTCACAAAGCGTGAGCTCGCGGAGGTGGAGGCACAGCTGCAGGCAACC
CAGCGGGAAAAGAAGAGGGGGGTGCTGACAAGGGGCGAGCTGGACAGGGT
GGGAGACGGGACGCCAATGTACCAGGCCGTGGGGAAGATGTTCTTGTCGC
AAACAAAGGAGGAGATCACCGCTCTCCTGGACGGGAAGGCAGAGGACAAG
AGCAAGTCGGAGGCACAGCTCCAGGGAAGATGTTCTTGTCGCAAACAAAG
GAGGAGATCACCGCTCTCCTGGACGGGAAGGCAGAGGACAAGAGCAAGTC
GGAGGCACAGCTCCAGGCCAAGCAGTCGTACCTCCAGAGCCGATTGGCTT
CGGAGCAGAGCAATCTGGACGAGATCATCAAGAACATCCAGGCTCAGGGA
TAGGCCAAGCAGTCGTACCTCCAGAGCCGATTGGCTTCGGAGCAGAGCAA
TCTGGACGAGATCATCAAGAACATCCAGGCTCAGGGATAG