mRNA_S-firma_F_contig10454.644.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10454.644.1
Unique NamemRNA_S-firma_F_contig10454.644.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10454.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10454contigS-firma_F_contig10454:1794..3367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size1574
Cds size999
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.0171661-UTR-S-firma_F_contig10454:1793..23681622815580.0171661-UTR-S-firma_F_contig10454:1793..2368Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10454 1794..2368 +
1696949431.3389583-UTR-S-firma_F_contig10454:1793..23681696949431.3389583-UTR-S-firma_F_contig10454:1793..2368Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10454 1794..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.031744-CDS-S-firma_F_contig10454:2368..33671622815580.031744-CDS-S-firma_F_contig10454:2368..3367Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 2369..3367 +
1696949431.352496-CDS-S-firma_F_contig10454:2368..33671696949431.352496-CDS-S-firma_F_contig10454:2368..3367Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10454 2369..3367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10454.644.1prot_S-firma_F_contig10454.644.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10454 2369..3367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10454.644.1

>prot_S-firma_F_contig10454.644.1 ID=prot_S-firma_F_contig10454.644.1|Name=mRNA_S-firma_F_contig10454.644.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=333bp
MHQAYMQHLAGRIIALFTAGLQPSAAPFALTAAGLLAGKRQRKKKHTPSP
VPRDLSRCTRNASQPARRVSPELSSAISAEIASTTPGGQQLVNSSRPIHG
AVDKTPNNMEEKTKATDSRHAKQTSLPEATKNAQRPTRNDLSTQRTALEA
RSINRSPPSLKTCPRPDRSPSVAPPARLLPPSSALLLLFLPEPGQRLLHP
SQRPRPRPRRLLLSQGRSERHQPGAYPGTARRLGGGGHHHGAPRCRNSPT
ADGGGHIVYPLAGGTASRRRLGGLCLCLLRLRGWGQHRRGPSSGRDGELR
RVRRRHTLRRTTATGQVAAARRLLLLLWSATVA
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mRNA from alignment at S-firma_F_contig10454:1794..3367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10454.644.1 ID=mRNA_S-firma_F_contig10454.644.1|Name=mRNA_S-firma_F_contig10454.644.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1574bp|location=Sequence derived from alignment at S-firma_F_contig10454:1794..3367+ (Sphaerotrichia firma ET2_F female)
TAATTCCTGCGATCCCCGAACATAGAAGACGTTTTAACTTGGGTGTCTTT
AATTAATACCGACATTTCATTCAATTAAGGAAGAAATAAAATATCATCTC
GCGCGAAAGCCACCGCTTAAATACGTAATATGTACCTGTTTTCCTAGTCA
CCGTACTCCGCACTCCGGACGTATGTAGCAAGCTGCTACCAACTCGCCGT
TTTCGCCCCTTCAGCCCGAACGAACACTGTTCTAGTGCCGCCGGGCTAAA
AACCGCGGAGATCTCTCTGCCTCTTGTCATCCACCACACAAAGACGAGCG
CGAAACGGTTGTTGGGCTCTCGCCGCCCGACCTGACCGCCCCGGCTTTCC
CGGCAGGAACTAGCACCCCCAAAACAGCGAAAAAACGAACAACACCATAA
AATCAACCAGAGTTAATAGTTGCAAAAAAAAGACGAGACCGACCGATTTG
ATCATGTACAGCATACGAAAACGGTGAACCCCGTGCCACCTAGCCTCTCC
TTCCAACCCTCCTCTCGCGGGCATGGGGAGGGGGGGAACAAACCCTTCTA
CAAGCAAAACCCATAACAACCCGCCATGCACCAAGCATACATGCAGCACC
TCGCTGGGCGAATCATCGCCCTTTTCACAGCTGGACTGCAACCTTCTGCG
GCGCCCTTTGCCTTGACTGCGGCCGGGCTATTGGCAGGAAAACGGCAACG
CAAAAAAAAACACACACCCTCGCCCGTCCCACGCGACCTTTCGCGTTGCA
CACGAAATGCCAGCCAGCCAGCCAGACGCGTCAGCCCGGAACTCTCGTCC
GCAATCAGCGCCGAGATCGCTTCAACAACACCAGGTGGTCAACAGTTGGT
CAACAGCAGTAGGCCAATCCACGGCGCCGTTGACAAAACTCCAAACAACA
TGGAAGAAAAAACAAAGGCGACCGACTCACGGCATGCAAAACAAACATCC
CTGCCCGAGGCAACCAAAAACGCACAACGGCCGACCCGGAACGACCTCTC
AACTCAGCGGACCGCCTTGGAAGCCCGCTCAATCAATCGATCGCCCCCCT
CTCTCAAAACTTGCCCCCGCCCCGACCGGTCCCCATCTGTGGCTCCCCCC
GCCCGCCTCCTCCCGCCCTCATCAGCGCTCCTGCTTCTTTTTCTTCCCGA
ACCGGGACAGCGCCTTCTTCACCCCTCTCAGCGTCCCCGTCCCCGTCCCC
GCCGCCTTCTCCTTTCGCAAGGGCGTTCCGAACGACACCAACCGGGCGCG
TATCCCGGCACGGCCAGGCGTCTCGGCGGCGGCGGCCACCACCACGGCGC
CCCCCGCTGTCGAAATAGCCCCACCGCCGACGGAGGCGGCCACATCGTCT
ACCCCTTGGCTGGTGGTACTGCCTCCCGCCGGCGCCTGGGGGGCCTGTGC
CTGTGCCTGCTGCGACTGAGGGGGTGGGGTCAGCATCGCCGTGGCCCCTC
CTCGGGACGCGACGGAGAGCTGCGACGGGTCCGGCGACGACACACCTTGA
GGCGCACCACCGCCACCGGACAGGTTGCTGCCGCCCGGCGTCTGCTTCTG
CTTCTGTGGAGCGCCACCGTCGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10454:1794..3367+

>mRNA_S-firma_F_contig10454.644.1 ID=mRNA_S-firma_F_contig10454.644.1|Name=mRNA_S-firma_F_contig10454.644.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1998bp|location=Sequence derived from alignment at S-firma_F_contig10454:1794..3367+ (Sphaerotrichia firma ET2_F female)
ATGCACCAAGCATACATGCAGCACCTCGCTGGGCGAATCATCGCCCTTTT
CACAGCTGGACTGCAACCTTCTGCGGCGCCCTTTGCCTTGACTGCGGCCG
GGCTATTGGCAGGAAAACGGCAACGCAAAAAAAAACACACACCCTCGCCC
GTCCCACGCGACCTTTCGCGTTGCACACGAAATGCCAGCCAGCCAGCCAG
ACGCGTCAGCCCGGAACTCTCGTCCGCAATCAGCGCCGAGATCGCTTCAA
CAACACCAGGTGGTCAACAGTTGGTCAACAGCAGTAGGCCAATCCACGGC
GCCGTTGACAAAACTCCAAACAACATGGAAGAAAAAACAAAGGCGACCGA
CTCACGGCATGCAAAACAAACATCCCTGCCCGAGGCAACCAAAAACGCAC
AACGGCCGACCCGGAACGACCTCTCAACTCAGCGGACCGCCTTGGAAGCC
CGCTCAATCAATCGATCGCCCCCCTCTCTCAAAACTTGCCCCCGCCCCGA
CCGGTCCCCATCTGTGGCTCCCCCCGCCCGCCTCCTCCCGCCCTCATCAG
CGCTCCTGCTTCTTTTTCTTCCCGAACCGGGACAGCGCCTTCTTCACCCC
TCTCAGCGTCCCCGTCCCCGTCCCCGCCGCCTTCTCCTTTCGCAAGGGCG
TTCCGAACGACACCAACCGGGCGCGTATCCCGGCACGGCCAGGCGTCTCG
GCGGCGGCGGCCACCACCACGGCGCCCCCCGCTGTCGAAATAGCCCCACC
GCCGACGGAGGCGGCCACATCGTCTACCCCTTGGCTGGTGGTACTGCCTC
CCGCCGGCGCCTGGGGGGCCTGTGCCTGTGCCTGCTGCGACTGAGGGGGT
GGGGTCAGCATCGCCGTGGCCCCTCCTCGGGACGCGACGGAGAGCTGCGA
CGGGTCCGGCGACGACACACCTTGAGGCGCACCACCGCCACCGGACAGGT
TGCTGCCGCCCGGCGTCTGCTTCTGCTTCTGTGGAGCGCCACCGTCGCCA
TGCACCAAGCATACATGCAGCACCTCGCTGGGCGAATCATCGCCCTTTTC
ACAGCTGGACTGCAACCTTCTGCGGCGCCCTTTGCCTTGACTGCGGCCGG
GCTATTGGCAGGAAAACGGCAACGCAAAAAAAAACACACACCCTCGCCCG
TCCCACGCGACCTTTCGCGTTGCACACGAAATGCCAGCCAGCCAGCCAGA
CGCGTCAGCCCGGAACTCTCGTCCGCAATCAGCGCCGAGATCGCTTCAAC
AACACCAGGTGGTCAACAGTTGGTCAACAGCAGTAGGCCAATCCACGGCG
CCGTTGACAAAACTCCAAACAACATGGAAGAAAAAACAAAGGCGACCGAC
TCACGGCATGCAAAACAAACATCCCTGCCCGAGGCAACCAAAAACGCACA
ACGGCCGACCCGGAACGACCTCTCAACTCAGCGGACCGCCTTGGAAGCCC
GCTCAATCAATCGATCGCCCCCCTCTCTCAAAACTTGCCCCCGCCCCGAC
CGGTCCCCATCTGTGGCTCCCCCCGCCCGCCTCCTCCCGCCCTCATCAGC
GCTCCTGCTTCTTTTTCTTCCCGAACCGGGACAGCGCCTTCTTCACCCCT
CTCAGCGTCCCCGTCCCCGTCCCCGCCGCCTTCTCCTTTCGCAAGGGCGT
TCCGAACGACACCAACCGGGCGCGTATCCCGGCACGGCCAGGCGTCTCGG
CGGCGGCGGCCACCACCACGGCGCCCCCCGCTGTCGAAATAGCCCCACCG
CCGACGGAGGCGGCCACATCGTCTACCCCTTGGCTGGTGGTACTGCCTCC
CGCCGGCGCCTGGGGGGCCTGTGCCTGTGCCTGCTGCGACTGAGGGGGTG
GGGTCAGCATCGCCGTGGCCCCTCCTCGGGACGCGACGGAGAGCTGCGAC
GGGTCCGGCGACGACACACCTTGAGGCGCACCACCGCCACCGGACAGGTT
GCTGCCGCCCGGCGTCTGCTTCTGCTTCTGTGGAGCGCCACCGTCGCC
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