mRNA_S-firma_F_contig1045.639.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1045.639.1
Unique NamemRNA_S-firma_F_contig1045.639.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1045.639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1045contigS-firma_F_contig1045:23956..24650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size683
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1057017-CDS-S-firma_F_contig1045:23957..242091622815579.1057017-CDS-S-firma_F_contig1045:23957..24209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 23958..24209 -
1696949430.8039093-CDS-S-firma_F_contig1045:23957..242091696949430.8039093-CDS-S-firma_F_contig1045:23957..24209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 23958..24209 -
1622815579.120264-CDS-S-firma_F_contig1045:24221..246501622815579.120264-CDS-S-firma_F_contig1045:24221..24650Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 24222..24650 -
1696949430.8127954-CDS-S-firma_F_contig1045:24221..246501696949430.8127954-CDS-S-firma_F_contig1045:24221..24650Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 24222..24650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1045.639.1prot_S-firma_F_contig1045.639.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1045 23958..24650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1045.639.1

>prot_S-firma_F_contig1045.639.1 ID=prot_S-firma_F_contig1045.639.1|Name=mRNA_S-firma_F_contig1045.639.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=227bp
PPSPVHAVSVVDWPKGVGARLAEGERRVTATNTRGGVKNWMRRLWRVERI
PLWWPDTVKELSLGNNFSQTIVGFVWPASLQHLSLGDRFNMSVVGVAWPA
SLQKISFGLNFNMSIAGVAWPTSLQQISFGLNFNQPIAGVVWPQLSFGWH
FNKPIDGVVWPASLQQLSFGLNFNQPIAGVVWPASLQQLSFGTHFNQPID
GVVWPASLRKLSFEGYFSQPITGVVWP
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mRNA from alignment at S-firma_F_contig1045:23956..24650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1045.639.1 ID=mRNA_S-firma_F_contig1045.639.1|Name=mRNA_S-firma_F_contig1045.639.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=695bp|location=Sequence derived from alignment at S-firma_F_contig1045:23956..24650- (Sphaerotrichia firma ET2_F female)
CCGCCTTCGCCTGTACACGCTGTGTCGGTGGTGGACTGGCCGAAAGGTGT
TGGAGCACGTCTTGCCGAGGGAGAACGAAGAGTTACCGCTACGAACACTC
GGGGGGGTGTGAAGAATTGGATGAGGCGGTTGTGGCGGGTCGAGCGGATT
CCACTGTGGTGGCCAGATACGGTGAAGGAGCTATCGCTTGGAAACAACTT
CAGCCAGACCATTGTCGGGTTTGTGTGGCCGGCCTCGCTGCAGCACCTAT
CACTCGGAGATCGCTTCAATATGTCCGTCGTTGGAGTGGCGTGGCCGGCC
TCTTTGCAGAAGATATCGTTTGGGTTGAATTTCAACATGTCTATCGCCGG
AGTGGCGTGGCCAACCTCTCTGCAACAGATATCGTTTGGGTTGAATTTCA
ACCAGCCCATCGCCGGAGTTGTGTGGCCGGCCTCCTTGCAGCAGCTATCG
TTTGGGTGGCATTTCAACAAGCCCATTGATGGAGTTGTGTGGCCGGCCTC
GCTGCAGCAGCTATCGTTTGGGTTGAATTTCAACCAGCCCATCGCCGGAG
TTGTGTGGCCGGCCTCCTTGCAGCAGCTATCATTCGGAACGCACTTCAAC
CAGCCCATTGACGGAGTTGTGTGGCCGGCCTCTCTGCGGAAGCTTTCTTT
CGAGGGTTATTTCAGCCAGCCCATCACCGGAGTTGTGTGGCCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1045:23956..24650-

>mRNA_S-firma_F_contig1045.639.1 ID=mRNA_S-firma_F_contig1045.639.1|Name=mRNA_S-firma_F_contig1045.639.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1362bp|location=Sequence derived from alignment at S-firma_F_contig1045:23956..24650- (Sphaerotrichia firma ET2_F female)
CCGCCTTCGCCTGTACACGCTGTGTCGGTGGTGGACTGGCCGAAAGGTGT
TGGAGCACGTCTTGCCGAGGGAGAACGAAGAGTTACCGCTACGAACACTC
GGGGGGGTGTGAAGAATTGGATGAGGCGGTTGTGGCGGGTCGAGCGGATT
CCACTGTGGTGGCCAGATACGGTGAAGGAGCTATCGCTTGGAAACAACTT
CAGCCAGACCATTGTCGGGTTTGTGTGGCCGGCCTCGCTGCAGCACCTAT
CACTCGGAGATCGCTTCAATATGTCCGTCGTTGGAGTGGCGTGGCCGGCC
TCTTTGCAGAAGATATCGTTTGGGTTGAATTTCAACATGTCTATCGCCGG
AGTGGCGTGGCCAACCTCTCTGCAACAGATATCGTTTGGGTTGAATTTCA
ACCAGCCCATCGCCGGAGTTGTGTGGCCGCCGCCTTCGCCTGTACACGCT
GTGTCGGTGGTGGACTGGCCGAAAGGTGTTGGAGCACGTCTTGCCGAGGG
AGAACGAAGAGTTACCGCTACGAACACTCGGGGGGGTGTGAAGAATTGGA
TGAGGCGGTTGTGGCGGGTCGAGCGGATTCCACTGTGGTGGCCAGATACG
GTGAAGGAGCTATCGCTTGGAAACAACTTCAGCCAGACCATTGTCGGGTT
TGTGTGGCCGGCCTCGCTGCAGCACCTATCACTCGGAGATCGCTTCAATA
TGTCCGTCGTTGGAGTGGCGTGGCCGGCCTCTTTGCAGAAGATATCGTTT
GGGTTGAATTTCAACATGTCTATCGCCGGAGTGGCGTGGCCAACCTCTCT
GCAACAGATATCGTTTGGGTTGAATTTCAACCAGCCCATCGCCGGAGTTG
TGTGGCCGCAGCTATCGTTTGGGTGGCATTTCAACAAGCCCATTGATGGA
GTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCGTTTGGGTTGAATTTCAA
CCAGCCCATCGCCGGAGTTGTGTGGCCGGCCTCCTTGCAGCAGCTATCAT
TCGGAACGCACTTCAACCAGCCCATTGACGGAGTTGTGTGGCCGGCCTCT
CTGCGGAAGCTTTCTTTCGAGGGTTATTTCAGCCAGCCCATCACCGGAGT
TGTGTGGCCGCAGCTATCGTTTGGGTGGCATTTCAACAAGCCCATTGATG
GAGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCGTTTGGGTTGAATTTC
AACCAGCCCATCGCCGGAGTTGTGTGGCCGGCCTCCTTGCAGCAGCTATC
ATTCGGAACGCACTTCAACCAGCCCATTGACGGAGTTGTGTGGCCGGCCT
CTCTGCGGAAGCTTTCTTTCGAGGGTTATTTCAGCCAGCCCATCACCGGA
GTTGTGTGGCCG
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