mRNA_S-firma_F_contig1045.635.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1045.635.1
Unique NamemRNA_S-firma_F_contig1045.635.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.000e-35
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGSDYFLVTFTGGY-YPHDLKRRKVVQYISLIK-PDAAGTDN 381
            MGL+S LA++PEVL+V+P   ARL NAVA A+ QSAT T+TPL DAGLDG+GEVIQ+VDSGLD+ SCFF D DG  VE G  +D V    D  + T  G Y +P D+ RRK+VQYI L K PD   T +
Sbjct:  297 MGLLSQLAAKPEVLRVSPLQSARLHNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDSGLDETSCFFADDDGLQVEHGFLFDGVRVEDDGNVSTVLGNYSFPFDMSRRKIVQYIQLFKTPDQGSTSS 425          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: A0A6H5K365_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K365_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.340e-33
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATG--------SDYFLVTFTGGYYPHDLKRRKVVQYISLIKPDA 366
            MGLVS LA RPEVL+V+P    R+LNA A+ I QSA+ T TPLTDAGLDG+GE+IQ++DSGLD+ SC+F D  G+ V+ G+Y+DE+A          SD     F GG + +  +RRK++QYI L+ PD+
Sbjct:   33 MGLVSVLAGRPEVLRVSPRPTKRVLNAAARGIVQSASATDTPLTDAGLDGTGEIIQVIDSGLDETSCYFIDDSGEEVDHGYYFDELAQAAVYSSLYSSDETATIFNGGDFSYYPERRKIIQYIDLVNPDS 162          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.860e-33
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGSDYFLVTFTGGY-YPHDLKRRKVVQYISLIK-PDAAGTDN 381
            MGL+S LA++PEVL+V+P   A L NAVA A+ QSAT T+TPL DAGLDG+GEVIQ+VD+GLD+ SCFF D DG  VE G  +  V    D  + T  G Y +P D+ RRK+VQYI + K PD   T +
Sbjct:  250 MGLLSQLAAKPEVLRVSPLQSASLYNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDTGLDETSCFFADDDGLQVEHGFLFGGVRVEGDGNVSTVLGNYSFPFDMSRRKIVQYIQMFKTPDQGSTSS 378          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.320e-33
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGSD-----YFLVTFTGGYYPHDLKRRKVVQYISLIKPDA 366
            MGLVS+ A RPEVL+V+P H  R+LN  A+ I QSA+ T TPLTDAGLDG+GEVIQ+VD+GLD+ SCFF D  G+ V+ G++++E+  GS       +   F  G + +  +RRKV+QYI L+ PD+
Sbjct:  321 MGLVSFFAGRPEVLRVSPRHTKRVLNEAARGIIQSASATDTPLTDAGLDGTGEVIQVVDTGLDETSCFFIDDGGEEVDHGYFFEELFVGSTGSSQLIYYPVFEAGDFTYTEERRKVIQYIELVNPDS 447          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: D8LQI1_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.670e-32
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGSDYFLVT----------FTGGYYPHDLKRRKVVQYISLIKPD 363
            MGLVS+LASR EVLKVA +++   LNA A+A  QSA++  TPLTDAGLDGSGEVIQI+D+G+++ +CF    DG  VE G+Y+D VA+ +  F  +          FTGG + +D  RRKV+QYI LI PD
Sbjct:  316 MGLVSFLASRHEVLKVAGWNRKVNLNAAARATIQSASVDSTPLTDAGLDGSGEVIQIIDAGVNETTCFLEHGDGTEVEHGYYFDFVASSNPLFTSSSESRSMFKAEFTGGDFSYDSDRRKVIQYIDLINPD 446          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.540e-31
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDG-KHVEGGHYYDEVA----------TGSDYFLV---TFTGGYYPHDLKRRKVVQYISLIKPDAAGTDNPN 387
            M L+S+LASRPEVL+V+P    +LLNA A    QSA +T++P+TDAGLDG+GEVIQIVD+GLD  SCFF D+DG + V  GHY++E+           T  D+ L     FTGG +  DL RRK+VQYI+LI+ D+      N
Sbjct:  116 MALLSFLASRPEVLRVSPARAIKLLNAAAYHNVQSANLTESPMTDAGLDGTGEVIQIVDTGLDVNSCFFVDEDGGEGVAHGHYFEEIGVEASALSSWFTSWDFNLQIARVFTGGDFNFDLSRRKIVQYINLIRQDSETNSTAN 258          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: A0A6H5L2G3_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.250e-30
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGS----------DYFLVTFTGGYYPHDLKRRKVVQYISLIKPD 363
            MGLVS+ ASR EVLKV  +++   LNA A+A  QSA++  TPLTDAGLDGSGEVIQI+D+G+++ +CF    DG  VE G+Y+D VA+ +            F   FTGG + +D  RRKV+QYI LI PD
Sbjct:    5 MGLVSFFASRHEVLKVTGWNRKVNLNAAARATIQSASVDSTPLTDAGLDGSGEVIQIIDAGVNETTCFLEHGDGTEVEHGYYFDFVASSNPSFDSSSESRSMFKAEFTGGDFFYDSDRRKVIQYIDLINPD 135          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: D8LNG4_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.220e-29
Identity = 72/155 (46.45%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFF-RDQDGKHVEGGHYYDEVA--------------------------------TGSDYFLVT-FTGGYYPHDLKRRKVVQYISLIKPD 363
            MGLVS+LAS+PEVL+VAP     LLNA A+A  QSAT+T TPLTDAGLDG+G+V+Q++DSG+D+ SCFF  D+ G HV  GHY++E                                  TGS Y +   F GG +     RRK++QYI+LIK D
Sbjct:    1 MGLVSFLASKPEVLRVAPRQSQALLNAAARANIQSATVTDTPLTDAGLDGTGQVVQVIDSGVDESSCFFAHDESGDHVPHGHYFEEWGINPSLTSSSFSSPXXXXXXXXXXXPWATADHHTGSYYQIAEEFDGGDFTIYPDRRKIIQYINLIKSD 155          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.170e-29
Identity = 72/154 (46.75%), Postives = 92/154 (59.74%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFF-RDQDGKHVEGGHYYDEVA-------------------------------TGSDYFLVT-FTGGYYPHDLKRRKVVQYISLIKPD 363
            MGLVS+LAS+PEVL+VAP     LLNA A+A  QSAT+T TPLTDAGLDG+G+V+Q++DSG+D+ SCFF  D+ G HV  GHY++E                                 TGS Y +   F GG +     RRK++QYI+LIK D
Sbjct:  312 MGLVSFLASKPEVLRVAPRQSQALLNASARANIQSATVTDTPLTDAGLDGTGQVVQVIDSGVDESSCFFAHDESGDHVPHGHYFEEWGINPPLTSSSFSSPTSDDDDSLGWPRATDDHRTGSYYQIAEEFDGGDFTIFPDRRKIIQYINLIKSD 465          
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 115 bits (289), Expect = 1.770e-27
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 1
Query:    1 MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDGSGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVA 261
            MGLVS+L++R EVL+V+P H  RLLNAVA+ I QSATIT+ PLTDAGLDG+G+VIQ++D+GLD+ SCFF D DG+ V  GHYY+ + 
Sbjct:  317 MGLVSFLSNRLEVLRVSPRHADRLLNAVARTIIQSATITEAPLTDAGLDGTGQVIQVIDTGLDETSCFFIDDDGEEVPHGHYYEALG 403          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1045.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW0_ECTSI2.000e-3558.14Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K365_9PHAE1.340e-3352.31Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LU20_ECTSI2.860e-3355.04Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K229_9PHAE5.320e-3351.97Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
D8LQI1_ECTSI4.670e-3253.44Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LBZ2_ECTSI1.540e-3151.05Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L2G3_9PHAE1.250e-3051.91Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG4_ECTSI2.220e-2946.45Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQT4_9PHAE3.170e-2946.75Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1R2_SACJA1.770e-2764.37Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1045contigS-firma_F_contig1045:731..2022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LNG5
PFAMsPeptidase_S8
Max annot lvl2759|Eukaryota
Evalue3.44e-34
EggNOG OGsCOG1404@1|root,KOG1114@2759|Eukaryota
Descriptiontripeptidyl-peptidase activity
COG categoryO
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1045.635.1prot_S-firma_F_contig1045.635.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1045 731..2022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1973765-CDS-S-firma_F_contig1045:730..8981622815579.1973765-CDS-S-firma_F_contig1045:730..898Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 731..898 +
1696949430.8327138-CDS-S-firma_F_contig1045:730..8981696949430.8327138-CDS-S-firma_F_contig1045:730..898Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 731..898 +
1622815579.2154107-CDS-S-firma_F_contig1045:1338..15001622815579.2154107-CDS-S-firma_F_contig1045:1338..1500Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 1339..1500 +
1696949430.8434236-CDS-S-firma_F_contig1045:1338..15001696949430.8434236-CDS-S-firma_F_contig1045:1338..1500Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 1339..1500 +
1622815579.231577-CDS-S-firma_F_contig1045:1965..20221622815579.231577-CDS-S-firma_F_contig1045:1965..2022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 1966..2022 +
1696949430.8529685-CDS-S-firma_F_contig1045:1965..20221696949430.8529685-CDS-S-firma_F_contig1045:1965..2022Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 1966..2022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1045.635.1

>prot_S-firma_F_contig1045.635.1 ID=prot_S-firma_F_contig1045.635.1|Name=mRNA_S-firma_F_contig1045.635.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=129bp
MGLVSYLASRPEVLKVAPFHKARLLNAVAKAISQSATITKTPLTDAGLDG
SGEVIQIVDSGLDQESCFFRDQDGKHVEGGHYYDEVATGSDYFLVTFTGG
YYPHDLKRRKVVQYISLIKPDAAGTDNPN
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mRNA from alignment at S-firma_F_contig1045:731..2022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1045.635.1 ID=mRNA_S-firma_F_contig1045.635.1|Name=mRNA_S-firma_F_contig1045.635.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1292bp|location=Sequence derived from alignment at S-firma_F_contig1045:731..2022+ (Sphaerotrichia firma ET2_F female)
ATGGGACTCGTTTCCTACCTAGCCTCGAGACCCGAGGTCCTCAAAGTGGC CCCCTTTCACAAGGCTAGGCTCTTGAACGCAGTGGCAAAGGCTATCAGCC AAAGTGCCACCATCACCAAGACACCGCTGACGGACGCCGGGCTTGACGGT TCGGGCGAAGTCATCCAGGTGATGCCAAGTCAGCTCTCACGAATGACTAA AGCGGAGAAGTAACAAGTACCTGGTTCATTGTTTTCGCTCGTAACTACGC ACTTTCGGCACCCCGTAACAGACTAGTCATGATGGAATGTTGTTTAAAGC CACTTTCTACCAAACTCGTGCCGGTGAAGTTCGAAGAATCCGTCTGAACA ATGTTTTCATGAGCTCTTCTGTTGCCTTTTGTTTTGCAGACAAAGGTGTG GGGTTTCGACCCCAGAAGGCTTTGCTCGTGTAGATATTTAGGCGTGTCTT ACAGCTTAGCATACCTGTGCTATCTTTTTCTCGATTGGGTATCGCTCAGA GGACGTGCTCACATCTATTTCGGGTATGTGCGGCTGTGGCCGGGGTAACG TAGGTGACCACCAAGTATTGCGGTGTGTATTTCTTGAGAACCGATGCGTT GTTTGCAGATTGTCGACTCCGGCCTGGACCAAGAGTCGTGTTTTTTCCGA GACCAAGACGGAAAGCATGTTGAGGGCGGACACTACTACGACGAAGTTGC CACTGGGTCCGACTATTTCCTGGTAACCTTCACCGGCGGCTACTATCCGC ACGACTTAAAACGCAGAAAGGTACGGGGAATCGTGTTTGTGACTTTCATG TCTTGACGAACATCGCCTCCCAATCTTCCAAATATGATTCAGTCGTAAAC ACACTACTCCTTACAGATTCCGACCCCGGCTCTCTTTTACAGACGACACA AGTTGCTCCCCTTGTAGGCATTGCAACGCAATGGCTCTTTTTCCACATCA CTCCCTGAGCGGTACATGCGTACGTGCTGAACATGGTAACCGGCGTCTCT TTCTGCGAACGACGTAGCTGCAGATGATGCCGATTCCCGCCGTTGCTGGG TCTTCTTCGCAGCAAGTCGACTCACCAATCCTTCCCTCACGTAGACTGCA CCATGTGCGAGACTCACCTATTCAGCGTAAGACGCGGTAGAACCGCGCGC GGTTCTCCGCTTCTTGTGATGTCGCGTTCTGCCTTCAACGGAGTTTTCTC GGTGCTTTTTGCCAATCGTCAATCTTTGCTGCAAGGTTGTCCAGTACATC AGCCTGATCAAGCCAGACGCGGCCGGCACTGATAATCCGAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1045:731..2022+

>mRNA_S-firma_F_contig1045.635.1 ID=mRNA_S-firma_F_contig1045.635.1|Name=mRNA_S-firma_F_contig1045.635.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=774bp|location=Sequence derived from alignment at S-firma_F_contig1045:731..2022+ (Sphaerotrichia firma ET2_F female)
ATGGGACTCGTTTCCTACCTAGCCTCGAGACCCGAGGTCCTCAAAGTGGC
CCCCTTTCACAAGGCTAGGCTCTTGAACGCAGTGGCAAAGGCTATCAGCC
AAAGTGCCACCATCACCAAGACACCGCTGACGGACGCCGGGCTTGACGGT
TCGGGCGAAGTCATCCAGATGGGACTCGTTTCCTACCTAGCCTCGAGACC
CGAGGTCCTCAAAGTGGCCCCCTTTCACAAGGCTAGGCTCTTGAACGCAG
TGGCAAAGGCTATCAGCCAAAGTGCCACCATCACCAAGACACCGCTGACG
GACGCCGGGCTTGACGGTTCGGGCGAAGTCATCCAGATTGTCGACTCCGG
CCTGGACCAAGAGTCGTGTTTTTTCCGAGACCAAGACGGAAAGCATGTTG
AGGGCGGACACTACTACGACGAAGTTGCCACTGGGTCCGACTATTTCCTG
GTAACCTTCACCGGCGGCTACTATCCGCACGACTTAAAACGCAGAAAGAT
TGTCGACTCCGGCCTGGACCAAGAGTCGTGTTTTTTCCGAGACCAAGACG
GAAAGCATGTTGAGGGCGGACACTACTACGACGAAGTTGCCACTGGGTCC
GACTATTTCCTGGTAACCTTCACCGGCGGCTACTATCCGCACGACTTAAA
ACGCAGAAAGGTTGTCCAGTACATCAGCCTGATCAAGCCAGACGCGGCCG
GCACTGATAATCCGAACGTTGTCCAGTACATCAGCCTGATCAAGCCAGAC
GCGGCCGGCACTGATAATCCGAAC
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