mRNA_S-firma_F_contig10449.633.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10449.633.1
Unique NamemRNA_S-firma_F_contig10449.633.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A7S1C5P9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P9_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.110e-58
Identity = 90/156 (57.69%), Postives = 125/156 (80.13%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPP-VDPHRVVRNVVADKPRVTRFDIDW 468
             A+VN++NI VL+NP     PF+FEV+FEC+A L++DLE +VVYVGSAE+  +DQEL +VLVGP+PVG N  ++++A PDPS+IP  D+LGVTVVL+T SY+ +EF+RVGYYV+NE    + + +G APP  ++P +VVRN++A+KPRVTRF +DW
Sbjct:    1 MASVNVLNISVLDNPTAFTNPFQFEVTFECVAELSDDLEWKVVYVGSAESDKFDQELDNVLVGPVPVGVNKFVMQTAPPDPSRIPKTDVLGVTVVLITCSYKSQEFIRVGYYVNNEWG--EELAEGEAPPEDMEPAKVVRNILAEKPRVTRFPVDW 154          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A5A8DVW2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVW2_CAFRO)

HSP 1 Score: 182 bits (463), Expect = 2.030e-56
Identity = 90/155 (58.06%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             A V ++NI V NNPA L++PF+FE++FEC + L++DLE RV+YVGSAE+S++DQEL +VLVGP+PVGTN  ML + APDPSKIP  DLLGVTVVL+T SY+ +EF+RVGYYV+N      + E   A   +DP ++ R+++ DKPRVTRF I W
Sbjct:    1 MAVVTVLNIAVHNNPAKLLSPFQFEITFECTSALSDDLEWRVIYVGSAESSDHDQELDNVLVGPVPVGTNKFMLSTDAPDPSKIPATDLLGVTVVLVTCSYKAQEFIRVGYYVNN-AYGEALPEGEEAATAIDPEKIFRHLLEDKPRVTRFPIKW 154          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: K0RRQ2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRQ2_THAOC)

HSP 1 Score: 181 bits (460), Expect = 6.380e-56
Identity = 94/155 (60.65%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             A VN+VN+ VL+NPAP  A F FE++FECL PL++DLE +V+YVGSAE +++DQ L  +LVGPIPVG N  +L++ APD S+IP AD+LGVTVVL+T SYR KEFVRVGYYV+NE   P   E G  P P+D ++V R V++DKPRVTRF I W
Sbjct:    1 MALVNVVNMAVLDNPAPFSATFSFEITFECLQPLSDDLEWKVLYVGSAEDTSHDQVLDEILVGPIPVGINKFVLQADAPDRSQIPEADVLGVTVVLVTCSYRNKEFVRVGYYVNNEYAEPYDEEKG-PPLPLDINKVRRVVLSDKPRVTRFPIKW 154          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A6A6CU07_9PEZI (Anti-silencing function protein 1 (Fragment) n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CU07_9PEZI)

HSP 1 Score: 178 bits (452), Expect = 1.080e-54
Identity = 87/155 (56.13%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             ATV+++N+ V NNPAP  +P++FE++FECL PL +DLE ++ YVGSA +S +DQEL S+LVGPIPVG N  + E+  PD  +IP  D+LGVTV+LL+ SY  +EFVRVGYYV+NE ++P M E+  A P  D  ++ RN++ADKPRVTRF I W
Sbjct:    1 MATVSLLNVSVRNNPAPFNSPYEFEITFECLEPLQKDLEWKLTYVGSATSSEHDQELDSLLVGPIPVGVNKFVFEADPPDTKRIPATDILGVTVILLSCSYAEREFVRVGYYVNNEYMDPSMNEEPPAKPDFD--KIRRNILADKPRVTRFQIKW 153          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A139HL71_9PEZI (Histone chaperone n=4 Tax=Pseudocercospora TaxID=131324 RepID=A0A139HL71_9PEZI)

HSP 1 Score: 179 bits (455), Expect = 2.020e-53
Identity = 89/155 (57.42%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             ATV+I+N+ V NNPAP  AP++FE++FECL PLA+DLE ++ YVGSA +S +DQEL S+LVGPIPVG N  + E+  P+ S+IP  D+LGVTV+LL+ SY  +EFVRVGYYV+NE ++  M E+  A P +D  ++ RN++ADKPRVTRF I W
Sbjct:    1 MATVSILNVSVRNNPAPFNAPYEFEITFECLEPLAKDLEWKLTYVGSATSSEHDQELDSLLVGPIPVGVNKFVFEADPPNTSRIPATDILGVTVILLSCSYDDREFVRVGYYVNNEYMDQSMNEEPPAKPDMD--KIRRNILADKPRVTRFQIKW 153          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A6G0WHB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHB9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.290e-53
Identity = 88/156 (56.41%), Postives = 114/156 (73.08%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDWA 471
             A V + NI VL+NP     PF+FEV+FEC  PL +DLE ++ YVGSAE  + DQ L  VLVGP+PVGTN  + +S  PDP+ IP  D +GVTVVL+T SY+ +EFVRVGYYV+N+  +P ++E+   PP VD H++ RN++ADKPRVTRF IDWA
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPDPAAIPEEDKIGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEN--PPPVVDIHKLQRNILADKPRVTRFPIDWA 154          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A1Y3NAE1_PIRSE (Anti-silencing function protein 1 n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NAE1_PIRSE)

HSP 1 Score: 174 bits (442), Expect = 2.960e-53
Identity = 85/155 (54.84%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             + VNI N+ + NNPA     F+FE++FECLAPL EDLE +V+YVGSAE+  YDQEL S++VGP+P+G N  +L + AP+  KIP  D +GVTVVLLT SY G+EFVRVGYYV+N+ ++ ++ E+   PP VD  ++ RN++ +KPRVTRF I+W
Sbjct:    1 MSLVNITNVQIPNNPALFNTEFQFEITFECLAPLKEDLEFKVIYVGSAESEEYDQELDSIMVGPVPLGMNRFVLTTPAPNSEKIPTDDTIGVTVVLLTCSYMGREFVRVGYYVNNDYIDEELREN--PPPQVDFSKLYRNILVEKPRVTRFLIEW 153          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A7S2NQ03_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NQ03_9EUKA)

HSP 1 Score: 174 bits (440), Expect = 6.150e-53
Identity = 86/158 (54.43%), Postives = 120/158 (75.95%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDP--HRVVRNVVADKPRVTRFDIDWA 471
             A VNI N+GVL+NP+    PF+FEVSFEC+AP+AED+E +++YVGSAE+ ++DQ L SVLVGP+ VG   ++ ++  PD  +IP  DLLGVTV+LL+  YR +EF+RVGYYV++E  +P++ E+    PP  P   R++RN++ADKPRVTR+ IDWA
Sbjct:    1 MACVNITNVGVLDNPSRFDNPFQFEVSFECIAPIAEDIEWKLIYVGSAESDDHDQLLDSVLVGPMQVGGYKIVFQAEPPDARRIPSHDLLGVTVILLSCFYRDREFIRVGYYVNSEYDSPELNEN----PPEQPIYERIIRNILADKPRVTRYQIDWA 154          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: A0A8J5XFV2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFV2_DIALT)

HSP 1 Score: 174 bits (441), Expect = 8.150e-53
Identity = 85/155 (54.84%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVTRFDIDW 468
             A +N+  + VL+NPA    P +FE+SFECLA +++D+E +V YVGSAE+  +DQEL SVLVGPI VG+  +++++ APDPSKIPP DLLGVTVV+L+  Y+ KEFVR+GYYVSNE  +P++ ++   P  V+  RVVRNV+ DKPRVT++++ W
Sbjct:    1 MACINVTGVQVLDNPASFKNPLQFEISFECLAAISDDIEWKVTYVGSAESEEFDQELDSVLVGPINVGSYKIVVQADAPDPSKIPPEDLLGVTVVILSCLYKEKEFVRIGYYVSNEYDDPELRDN--PPDVVELERVVRNVLHDKPRVTKYEVPW 153          
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Match: B7QIN7_IXOSC (Anti-silencing protein, putative n=4 Tax=Ixodes TaxID=6944 RepID=B7QIN7_IXOSC)

HSP 1 Score: 175 bits (443), Expect = 8.560e-53
Identity = 86/157 (54.78%), Postives = 117/157 (74.52%), Query Frame = 1
Query:    4 QATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAETSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTVSYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPH--RVVRNVVADKPRVTRFDIDW 468
             A V++ N+ VL+NP+  + PF+FE++FEC+  L EDLE +++YVGSAE+ +YDQ L +V VGP+P G +M + ++  PDPSKIP  D +GVTVVLLT SYRG+EF+RVGYYV+NE  +PD+ E+    PP  PH  R+ RN++A  PRVTRF IDW
Sbjct:    1 MAKVHVCNVVVLDNPSLFLNPFQFEITFECIEDLKEDLEWKIIYVGSAESEDYDQILDTVYVGPVPEGRHMFVFQADPPDPSKIPVQDAVGVTVVLLTCSYRGREFIRVGYYVNNEYADPDLKEN----PPSSPHFDRLQRNILATNPRVTRFKIDW 153          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10449.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C5P9_9STRA6.110e-5857.69Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8DVW2_CAFRO2.030e-5658.06Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
K0RRQ2_THAOC6.380e-5660.65Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6A6CU07_9PEZI1.080e-5456.13Anti-silencing function protein 1 (Fragment) n=1 T... [more]
A0A139HL71_9PEZI2.020e-5357.42Histone chaperone n=4 Tax=Pseudocercospora TaxID=1... [more]
A0A6G0WHB9_9STRA2.290e-5356.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1Y3NAE1_PIRSE2.960e-5354.84Anti-silencing function protein 1 n=4 Tax=Neocalli... [more]
A0A7S2NQ03_9EUKA6.150e-5354.43Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8J5XFV2_DIALT8.150e-5354.84Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
B7QIN7_IXOSC8.560e-5354.78Anti-silencing protein, putative n=4 Tax=Ixodes Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10449contigS-firma_F_contig10449:2764..3287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog159749.K0RRQ2
PFAMsASF1_hist_chap
Max annot lvl2836|Bacillariophyta
KEGG koko:K10753
Evalue1.05e-56
EggNOG OGsCOG5137@1|root,KOG3265@2759|Eukaryota,2XCPI@2836|Bacillariophyta
DescriptionASF1 like histone chaperone
COG categoryBK
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size474
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.051666-CDS-S-firma_F_contig10449:2763..31191622815579.051666-CDS-S-firma_F_contig10449:2763..3119Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10449 2764..3119 +
1696949430.7802272-CDS-S-firma_F_contig10449:2763..31191696949430.7802272-CDS-S-firma_F_contig10449:2763..3119Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10449 2764..3119 +
1622815579.0680017-CDS-S-firma_F_contig10449:3169..32871622815579.0680017-CDS-S-firma_F_contig10449:3169..3287Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10449 3170..3287 +
1696949430.7937431-CDS-S-firma_F_contig10449:3169..32871696949430.7937431-CDS-S-firma_F_contig10449:3169..3287Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10449 3170..3287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10449.633.1prot_S-firma_F_contig10449.633.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10449 2764..3287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10449.633.1

>prot_S-firma_F_contig10449.633.1 ID=prot_S-firma_F_contig10449.633.1|Name=mRNA_S-firma_F_contig10449.633.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=158bp
MQATVNIVNIGVLNNPAPLVAPFKFEVSFECLAPLAEDLEVRVVYVGSAE
TSNYDQELLSVLVGPIPVGTNMVMLESAAPDPSKIPPADLLGVTVVLLTV
SYRGKEFVRVGYYVSNECVNPDMVEDGMAPPPVDPHRVVRNVVADKPRVT
RFDIDWA*
back to top

mRNA from alignment at S-firma_F_contig10449:2764..3287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10449.633.1 ID=mRNA_S-firma_F_contig10449.633.1|Name=mRNA_S-firma_F_contig10449.633.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=524bp|location=Sequence derived from alignment at S-firma_F_contig10449:2764..3287+ (Sphaerotrichia firma ET2_F female)
ATGCAGGCCACTGTCAACATTGTGAACATTGGGGTGCTGAACAACCCGGC CCCCCTGGTAGCCCCCTTCAAGTTCGAGGTCTCCTTTGAGTGCCTGGCGC CCCTTGCGGAGGACTTGGAAGTCCGTGTGGTGTACGTTGGGTCTGCGGAG ACCTCCAACTACGACCAGGAGCTGCTGTCAGTGCTGGTGGGGCCCATCCC CGTCGGCACCAACATGGTCATGTTGGAGTCCGCGGCACCAGACCCATCCA AAATTCCGCCCGCAGACTTGCTGGGCGTCACCGTCGTCCTGCTCACTGTG TCGTACCGTGGCAAGGAGTTTGTGCGGGTTGGGTACTACGTTAGCAACGA GTGCGTGTGTTTGCAGGCGGGTGCAAAGCTGCTGGCTGTTTAACCACCCC CGACAGGAACCCCGACATGGTGGAGGACGGCATGGCACCACCTCCTGTGG ACCCCCACCGTGTTGTGCGCAATGTGGTGGCAGACAAGCCACGTGTGACA CGGTTCGATATTGACTGGGCATAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10449:2764..3287+

>mRNA_S-firma_F_contig10449.633.1 ID=mRNA_S-firma_F_contig10449.633.1|Name=mRNA_S-firma_F_contig10449.633.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=948bp|location=Sequence derived from alignment at S-firma_F_contig10449:2764..3287+ (Sphaerotrichia firma ET2_F female)
ATGCAGGCCACTGTCAACATTGTGAACATTGGGGTGCTGAACAACCCGGC
CCCCCTGGTAGCCCCCTTCAAGTTCGAGGTCTCCTTTGAGTGCCTGGCGC
CCCTTGCGGAGGACTTGGAAGTCCGTGTGGTGTACGTTGGGTCTGCGGAG
ACCTCCAACTACGACCAGGAGCTGCTGTCAGTGCTGGTGGGGCCCATCCC
CGTCGGCACCAACATGGTCATGTTGGAGTCCGCGGCACCAGACCCATCCA
AAATTCCGCCCGCAGACTTGCTGGGCGTCACCGTCGTCCTGCTCACTGTG
TCGTACCGTGGCAAGGAGTTTGTGCGGGTTGGGTACTACGTTAGCAACGA
GTGCGTATGCAGGCCACTGTCAACATTGTGAACATTGGGGTGCTGAACAA
CCCGGCCCCCCTGGTAGCCCCCTTCAAGTTCGAGGTCTCCTTTGAGTGCC
TGGCGCCCCTTGCGGAGGACTTGGAAGTCCGTGTGGTGTACGTTGGGTCT
GCGGAGACCTCCAACTACGACCAGGAGCTGCTGTCAGTGCTGGTGGGGCC
CATCCCCGTCGGCACCAACATGGTCATGTTGGAGTCCGCGGCACCAGACC
CATCCAAAATTCCGCCCGCAGACTTGCTGGGCGTCACCGTCGTCCTGCTC
ACTGTGTCGTACCGTGGCAAGGAGTTTGTGCGGGTTGGGTACTACGTTAG
CAACGAGTGCGTGAACCCCGACATGGTGGAGGACGGCATGGCACCACCTC
CTGTGGACCCCCACCGTGTTGTGCGCAATGTGGTGGCAGACAAGCCACGT
GTGACACGGTTCGATATTGACTGGGCATAGGAACCCCGACATGGTGGAGG
ACGGCATGGCACCACCTCCTGTGGACCCCCACCGTGTTGTGCGCAATGTG
GTGGCAGACAAGCCACGTGTGACACGGTTCGATATTGACTGGGCATAG
back to top