mRNA_S-firma_F_contig10443.630.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10443.630.1
Unique NamemRNA_S-firma_F_contig10443.630.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 7.880e-154
Identity = 232/298 (77.85%), Postives = 261/298 (87.58%), Query Frame = 1
Query:    1 ILWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRMRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERTAEEIEEFKSHNLHDEFDGFTAAMLKERLK 894
            ILWVDNLG A GTLEEF PFF SE+HKKVWHNYGFDRHVMFNSPD REEQRI+C+GFAGDTMHMARLWDTSMEK +GDTGFSLEAL++KLLGE +RKTPMKELFG+PKLKKDGTPGNLL+LPPIDEIQT P++R  FI YSAYDAQATWLVHR L QKLREMPWK+ MTMLDFY  YYVPFGELLTDMERTGI+VEAKGYLKD+EVQAR DKKKAEE FL WV++++P A  LNPSS+TQIQTLLFGG+ N K+ + LP  RVFK+ER   E+E FK+  + DE+  +TAAMLKE+LK
Sbjct:  821 ILWVDNLGGAAGTLEEFLPFFASERHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYDAQATWLVHRELMQKLREMPWKDGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKGYLKDIEVQARNDKKKAEETFLSWVKKIQPGAETLNPSSSTQIQTLLFGGAMNPKTKEKLPVRRVFKIERDPAELEAFKATQVQDEYADYTAAMLKEKLK 1118          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 5.960e-153
Identity = 231/298 (77.52%), Postives = 259/298 (86.91%), Query Frame = 1
Query:    1 ILWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRMRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERTAEEIEEFKSHNLHDEFDGFTAAMLKERLK 894
            ILWVDNLG A GTLEEF PFF SEKHKKVWHNYGFDRHVMFNSPD REEQRI+C+GFAGDTMHMARLWDTSMEK +GDTGFSLEAL++KLLGE +RKTPMKELFG+PKLKKDGTPGNLL+LPPIDEIQT P++R  FI YSAYDAQATWLVHR L QKLREM WK+ MTMLDFY  YYVPFGELLTDMERTGI+VEAK YL+D+EVQAR DKKKAEE FL WV++++P A  LNPSS+TQIQTLLFGG+ N K+ + LP  RVFK+ER   E+E FK+  + DEF  +TAAMLKE+LK
Sbjct:  691 ILWVDNLGAAAGTLEEFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLFGGATNPKTKEKLPVRRVFKIERDPAELEAFKATQVQDEFADYTAAMLKEKLK 988          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S1XY06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY06_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.770e-86
Identity = 142/278 (51.08%), Postives = 187/278 (67.27%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWK-------ENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRMRPDAVGLNPSSTTQIQTLLFGGSKND-----KSGDLLPEIRVFKVE 801
            LW++N GE+ G L+EF+ +FE  ++KKVWHNYGFDRHVM+N       + ++  GF GDTMHMARLW+T  +K  G  G+SLEALT  LLG  +RK PMKE+FGV KLKKDGTPG+L ++PP+ ++Q  P+ R  +I YSAYDA+ TWL+   L   LR+M W+       E  TM DFY  YYVPFGELLTDMER GI VEA+ YL +V+V A  D+KKA   F  W   + P+   +NP+S+TQ+QT  FGG+K       ++ + L   R+F+ E
Sbjct:  113 LWIENDGESRGLLDEFKAWFEDPRYKKVWHNYGFDRHVMYN-------EGVDVQGFGGDTMHMARLWNTGRDK--GGGGYSLEALTEDLLG--RRKVPMKEIFGVAKLKKDGTPGSLKVVPPVRDLQFRPEHRRKWIKYSAYDAEGTWLLRDKLEGLLRQMSWEPVGRPQEEEHTMWDFYQMYYVPFGELLTDMERNGIHVEAETYLAEVQVTAEADRKKALRTFRDWAASVNPNGRFINPASSTQLQTFFFGGAKRHTKNPREAPEYLEAERIFETE 379          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S2SQU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQU9_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.130e-82
Identity = 142/281 (50.53%), Postives = 192/281 (68.33%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGD-TGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQT---DPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRMR-PDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERTAEEIEEFK 831
            LWVDNL EADG L+EF+ +FE +   K WHNYGFDRHV+ N       + I+  GF  DTMHMARL D+S +K +G+  G+SLEALT  +L  ++RK  MK++FGV K +KDGTP ++ ++PPI+++Q    DP  R DFI YSAYDA+ TW + +AL  +LR   W+ + +M+DFY +Y+VPFGE LTDMER G++V A  YL  +E QA +DK++    F  WV  +  PD   LNPSS+ Q+QTLLFGG+KN  +G++LP  R  KVE   EE+ E +
Sbjct:  225 LWVDNLDEADGVLQEFKAWFEDQSQYKAWHNYGFDRHVLHN-------EGIDARGFVADTMHMARLEDSSRDKRTGEGAGYSLEALTTDML--QRRKVSMKDIFGVGKPRKDGTPSSVKVVPPIEDLQRGVQDPRHRWDFIRYSAYDAEGTWHLFKALEARLRAKSWETSYSMMDFYSRYFVPFGETLTDMERRGVWVNA-AYLAGLERQATEDKERLLGEFRSWVMEVAGPDGKYLNPSSSVQMQTLLFGGAKNPNTGEVLPNERRIKVELDPEEVAELE 495          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S1FS24_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FS24_9STRA)

HSP 1 Score: 269 bits (687), Expect = 5.890e-81
Identity = 146/306 (47.71%), Postives = 196/306 (64.05%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGW-VQRMRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERT------------AEEIEEFKSHNLHDEFDGFTAAMLK 882
            LW+DNL E+   ++ F+P+FE   H KVWHNYGFDRHVMFN       + I+  GF GDTMHMARL +T   K SG  G+SLEAL+  LL  KKRK PMKE+FGV +L+KDGT G+L+ +PP++E+Q  P+ RE++I YS YDAQ TW +H  LR  L++M W +   + D+Y  +   FGE+LTDMER GI V A  YL  +E+ ARKD+ +  E F  W   R+ PD + +NPSS+TQ+ TLLFGG  N K+G+    +RVFKV R              ++++   +++  DEFD  T   LK
Sbjct:  290 LWIDNLDESADLVQVFKPWFEDPTHFKVWHNYGFDRHVMFN-------ENIDVKGFGGDTMHMARLQNTHRLK-SGLGGYSLEALSADLL--KKRKRPMKEIFGVARLRKDGTRGSLVDIPPVEELQRRPEFRENWIIYSCYDAQCTWYLHSKLRNLLQKMSWVKGHNLYDYYWSFLRDFGEVLTDMERRGIRVNASDYLATIEITARKDRDEHVEAFRKWCASRIGPDGLAINPSSSTQLTTLLFGGGTNSKTGEESERVRVFKVPREDVSEAALKAYEERDKLDLKSTYDSKDEFDFMTVVQLK 585          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S3QI54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QI54_9STRA)

HSP 1 Score: 263 bits (672), Expect = 8.410e-80
Identity = 149/318 (46.86%), Postives = 194/318 (61.01%), Query Frame = 1
Query:    1 ILWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRM-RPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKV--------------ERTAEEIEEFKS-----HNLHDEFDGFTAAMLKERLK 894
            +LW+DNL EA G L+EF+ FFE E+ K VWHN+GFDRHVM+N       + I+  GF GDTMHMARL DTS  K     G+ LEALT  +L  ++RK PMKE+FGVP+L+KDGTPG+L+ +PP++ +Q DP  R  +I YSAYDA+ TWL+   L+  L +MPW +   + D+Y  +   FG++LTDMER GI V+AK YL  VEVQAR+D+K   E F  W   M   D + +NP+S+TQ+   LFGG+ N K+       RVFKV              ER A+  E+            DEFD   AA LK   K
Sbjct:  266 VLWIDNLDEAFGVLQEFKEFFEDERFKTVWHNFGFDRHVMWN-------EGIDVKGFGGDTMHMARLQDTSRAKYGAGMGYGLEALTNSIL--ERRKKPMKEIFGVPRLRKDGTPGSLVDVPPVEVLQRDPRFRVQWIIYSAYDAEGTWLLREELKYMLEDMPWFDGQNLYDYYQLHMRNFGKVLTDMERRGIRVDAKDYLAGVEVQAREDRKGHVEAFHKWAFEMIGVDGLAINPASSTQLCAFLFGGAANLKTKVRTETTRVFKVARDEIPDKAMALYRERDAQPNEQSSDALDSDERQPDEFDSMKAAQLKALCK 574          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A1E7FFT0_9STRA (DNA/RNA polymerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFT0_9STRA)

HSP 1 Score: 267 bits (682), Expect = 8.610e-80
Identity = 140/269 (52.04%), Postives = 189/269 (70.26%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPW-KENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQRM-RPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVER 804
            LW+DNL +A G L+EF+P+ E E+ KK+WHNYGFDRHVM+N       + I+C GF GDTMHMARL DTS  K +G  G+SLEALT +LL  +KR  PMKE+FGV ++KKDG+PG+L+ +PPI+ +Q DP+ R++FI YS YDA  TW +H+ L   L++M W  ++  + D+Y +    F E+LTDMER GI V+AK YL  VEVQARKD+K+  + F  W   +  PD + +NP+S TQ+ T LFGGS N K+ +   ++RVFKV R
Sbjct:  148 LWIDNLDDAHGILQEFKPWMEDERFKKIWHNYGFDRHVMWN-------EGIDCRGFGGDTMHMARLQDTSRMK-NGGGGYSLEALTSELLNMRKR--PMKEIFGVARIKKDGSPGSLVDVPPIEVLQRDPEFRKNFIAYSCYDAVGTWELHQRLVALLKKMEWISKDTNLFDYYWENMRYFAEVLTDMERRGIRVDAKDYLASVEVQARKDRKEHLKKFRQWAAVIIGPDGLAINPASATQLATFLFGGSTNLKTKEPTEDVRVFKVAR 406          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S2K5E3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5E3_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.560e-79
Identity = 145/310 (46.77%), Postives = 195/310 (62.90%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWV-QRMRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERT---AEEIEEFKSHNLH-------------DEFDGFTAAMLK 882
            LW+DNL ++ G L+ F+P+FE E+  KVWHNYGFDRHVM+N       + I+C+GF GDTMHMARL DT   K     G+SLEALT +LLG  +RK PMKE+FGVP+L+KDGT G+L+ LP I+++Q  P+ R ++I YSAYDA+ TWL+ R L++ L EMPWK    +  +Y KY   FGE+LTDMER G+ V+A  YL  VEVQAR+D++     F  W   R+ PD + +NP+S+ Q+   LFGG+ N K+ +     R  ++ R    AE I  F+  +               D FD  TA  LK
Sbjct:  287 LWIDNLDDSAGLLQMFKPWFEDERFLKVWHNYGFDRHVMWN-------EGIDCLGFGGDTMHMARLQDTGRSKYGQGRGYSLEALTDELLG--RRKKPMKEIFGVPRLRKDGTAGSLVDLPAIEDMQRKPEFRSNWIAYSAYDAEGTWLIRRKLQELLEEMPWKHGENLYYYYFKYLREFGEVLTDMERRGVRVDAHDYLAGVEVQAREDREYHVAAFRKWAASRIGPDGLAINPASSLQLCIFLFGGAVNKKTNEPTEHQRTIQIPREEIPAEAILAFQERDQKENGGGETEEEETPDSFDMMTAEQLK 587          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S2UPW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPW3_9STRA)

HSP 1 Score: 262 bits (670), Expect = 4.200e-79
Identity = 139/275 (50.55%), Postives = 187/275 (68.00%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGWVQR-MRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERTAEEIEE 825
            LW+DNL  + G L+EF+ +FE ++  KVWHNYGFDRH M+N       + I+C+GF GDTMHMARL DTS  K++   G+ LEALT  +LG  KRK PMKE+FGV +L+KDG+ G+L+ +PP++ +Q D   RE +I YSAYDA+ TWL+   L++ L  MPW+    M D+YH Y   FG++LTDMER GI V+ + YL  VEVQARKD+K     F  W  + +  D + LNP+S+ Q+ T LFGG++N K+ + L  +RVFKV R  EEI E
Sbjct:  132 LWIDNLDASCGILQEFKEWFEDDRFLKVWHNYGFDRHEMWN-------EGIDCLGFGGDTMHMARLQDTSRAKMAQGGGYGLEALTADILG--KRKRPMKEIFGVARLRKDGSEGSLVDIPPVEVMQRDLQFREKWIMYSAYDAEGTWLLREKLQKMLEAMPWQGKEHMFDYYHAYMREFGQVLTDMERRGIRVDVE-YLAGVEVQARKDRKHHLAEFRKWASKFIGADGLALNPASSVQLCTFLFGGAQNIKTKEALESVRVFKVPR--EEINE 394          
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Match: A0A7S1BEC9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEC9_9STRA)

HSP 1 Score: 269 bits (687), Expect = 5.890e-79
Identity = 146/306 (47.71%), Postives = 196/306 (64.05%), Query Frame = 1
Query:    4 LWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQRINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPMKELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWLVHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGYLKDVEVQARKDKKKAEENFLGW-VQRMRPDAVGLNPSSTTQIQTLLFGGSKNDKSGDLLPEIRVFKVERT------------AEEIEEFKSHNLHDEFDGFTAAMLK 882
            LW+DNL E+   ++ F+P+FE   H KVWHNYGFDRHVMFN       + I+  GF GDTMHMARL +T   K SG  G+SLEAL+  LL  KKRK PMKE+FGV +L+KDGT G+L+ +PP++E+Q  P+ RE++I YS YDAQ TW +H  LR  L++M W +   + D+Y  +   FGE+LTDMER GI V A  YL  +E+ ARKD+ +  E F  W   R+ PD + +NPSS+TQ+ TLLFGG  N K+G+    +RVFKV R              ++++   +++  DEFD  T   LK
Sbjct:  290 LWIDNLDESADLVQVFKPWFEDPTHFKVWHNYGFDRHVMFN-------ENIDVKGFGGDTMHMARLQNTHRLK-SGLGGYSLEALSADLL--KKRKRPMKEIFGVARLRKDGTRGSLVDIPPVEELQRRPEFRENWIIYSCYDAQCTWYLHSKLRNLLQKMSWVKGHNLYDYYWSFLRDFGEVLTDMERRGIRVNASDYLATIEITARKDRDEHVEAFRKWCASRIGPDGLAINPSSSTQLTTLLFGGGTNSKTGEESERVRVFKVPREDVSEAALKAYEERDKLDLKSTYDSKDEFDFMTVVQLK 585          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10443.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D2_9PHAE7.880e-15477.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ5_ECTSI5.960e-15377.52Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S1XY06_9STRA1.770e-8651.08Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SQU9_9STRA1.130e-8250.53Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1FS24_9STRA5.890e-8147.71Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3QI54_9STRA8.410e-8046.86Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A1E7FFT0_9STRA8.610e-8052.04DNA/RNA polymerase n=1 Tax=Fragilariopsis cylindru... [more]
A0A7S2K5E3_9STRA2.560e-7946.77Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2UPW3_9STRA4.200e-7950.55Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1BEC9_9STRA5.890e-7947.71Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10443contigS-firma_F_contig10443:415..5230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LMQ5
PFAMsDNA_pol_A,DNA_pol_A_exo1
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue9.77e-154
EggNOG OGsCOG0749@1|root,KOG0950@2759|Eukaryota
EC2.7.7.7
Descriptionplastid DNA replication
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons8
Model size894
Cds size894
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10443.630.1prot_S-firma_F_contig10443.630.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10443 415..5230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.6932423-CDS-S-firma_F_contig10443:414..5131622815578.6932423-CDS-S-firma_F_contig10443:414..513Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 415..513 -
1696949430.541085-CDS-S-firma_F_contig10443:414..5131696949430.541085-CDS-S-firma_F_contig10443:414..513Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 415..513 -
1622815578.7046525-CDS-S-firma_F_contig10443:1185..12541622815578.7046525-CDS-S-firma_F_contig10443:1185..1254Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 1186..1254 -
1696949430.5539682-CDS-S-firma_F_contig10443:1185..12541696949430.5539682-CDS-S-firma_F_contig10443:1185..1254Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 1186..1254 -
1622815578.718038-CDS-S-firma_F_contig10443:1673..17511622815578.718038-CDS-S-firma_F_contig10443:1673..1751Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 1674..1751 -
1696949430.5641515-CDS-S-firma_F_contig10443:1673..17511696949430.5641515-CDS-S-firma_F_contig10443:1673..1751Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 1674..1751 -
1622815578.7277348-CDS-S-firma_F_contig10443:2541..26201622815578.7277348-CDS-S-firma_F_contig10443:2541..2620Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 2542..2620 -
1696949430.5896363-CDS-S-firma_F_contig10443:2541..26201696949430.5896363-CDS-S-firma_F_contig10443:2541..2620Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 2542..2620 -
1622815578.7371802-CDS-S-firma_F_contig10443:3144..32751622815578.7371802-CDS-S-firma_F_contig10443:3144..3275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 3145..3275 -
1696949430.6022484-CDS-S-firma_F_contig10443:3144..32751696949430.6022484-CDS-S-firma_F_contig10443:3144..3275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 3145..3275 -
1622815578.7470858-CDS-S-firma_F_contig10443:3877..40411622815578.7470858-CDS-S-firma_F_contig10443:3877..4041Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 3878..4041 -
1696949430.610537-CDS-S-firma_F_contig10443:3877..40411696949430.610537-CDS-S-firma_F_contig10443:3877..4041Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 3878..4041 -
1622815578.7605298-CDS-S-firma_F_contig10443:4507..46971622815578.7605298-CDS-S-firma_F_contig10443:4507..4697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 4508..4697 -
1696949430.6188161-CDS-S-firma_F_contig10443:4507..46971696949430.6188161-CDS-S-firma_F_contig10443:4507..4697Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 4508..4697 -
1622815578.7720084-CDS-S-firma_F_contig10443:5146..52301622815578.7720084-CDS-S-firma_F_contig10443:5146..5230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 5147..5230 -
1696949430.6269972-CDS-S-firma_F_contig10443:5146..52301696949430.6269972-CDS-S-firma_F_contig10443:5146..5230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10443 5147..5230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10443.630.1

>prot_S-firma_F_contig10443.630.1 ID=prot_S-firma_F_contig10443.630.1|Name=mRNA_S-firma_F_contig10443.630.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=298bp
ILWVDNLGEADGTLEEFRPFFESEKHKKVWHNYGFDRHVMFNSPDGREEQ
RINCMGFAGDTMHMARLWDTSMEKISGDTGFSLEALTVKLLGEKKRKTPM
KELFGVPKLKKDGTPGNLLILPPIDEIQTDPDMREDFINYSAYDAQATWL
VHRALRQKLREMPWKENMTMLDFYHKYYVPFGELLTDMERTGIFVEAKGY
LKDVEVQARKDKKKAEENFLGWVQRMRPDAVGLNPSSTTQIQTLLFGGSK
NDKSGDLLPEIRVFKVERTAEEIEEFKSHNLHDEFDGFTAAMLKERLK
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mRNA from alignment at S-firma_F_contig10443:415..5230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10443.630.1 ID=mRNA_S-firma_F_contig10443.630.1|Name=mRNA_S-firma_F_contig10443.630.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4816bp|location=Sequence derived from alignment at S-firma_F_contig10443:415..5230- (Sphaerotrichia firma ET2_F female)
ATCTTGTGGGTGGACAACCTGGGGGAGGCGGACGGGACGCTCGAAGAGTT CCGCCCGTTCTTCGAGAGCGAGAAGCACAAGAAGGTATGTAGTGTCGTCT CTACCGGTAGGCGTGCCGTGCCGTGCGTTTTTTGTTCGGCGTTTTTTTTT TCTCTTTTCGGTAAAGGAAGCAGTCTACCGTGAAGCGTTTTTTGTTCGGC TTTTTTTTTTCTCTTTTCGGTGAAGGAAGCAGTCTACCGTGAAGGCCGGA AAAGCTGGTGGGGCTTGGCTGTTGTGTTTTTCTGGTCGCTTTCGCGCGCA CCAAACCACGGCAAAAAACGCCTCCCCCCTCGTGGAGATTTTTCTGAACA TACATGCTGTGTCTTGTGGTGTGATTTTCCTTCCCGCCCTGGCCCTCCCC GAGGCTGTGCCAATATCCCACTATTTCTAGACTGGTCGTTTCTATGAGAT TTTTTTTTTCTACGAATGTCGGCGGTACACCTCCATCCAACCCGTGAAGA GCCTCTGCTTCGTGTCTCTTGTGCACGTGGCAGGTTTGGCACAACTACGG GTTCGACAGGCACGTCATGTTCAACTCCCCGGACGGCCGGGAGGAGCAGA GGATCAACTGCATGGGCTTCGCGGGGGACACGATGCACATGGCGAGGCTG TGGGACACCAGCATGGAGAAGATCTCCGGAGACACCGGGTTCTCCCTCGA GGCCTTGACGGTCAAGCTTCTGGGTGAGTGTACATAATTTACACACCTCA CACGGGTAGGTGGGTAGGTAGGTAGGTATTGTTGTGCGCGCGTGCTTCGT GGTAGACGCCCAAGGTTTCAGCTTGTGTGTGTGCCTCCTTAACAAAAAGC ACCCTTCGTGCTTTGGGTGGGCGGCATACCTACAAGCGTTGTTTGGAGGT TTTTTTTTTTTTGGATTTTGGCGACGTTGCAGTCGAAACGCGGAGGTATG TATATGTATCTGTCTGCTGGTGGGTGACGAAACGGAGCAGCTTCCGAGGC AACACGAACACCGCCGCGCATCGGGTGTCGAGTGTCTCGCGCACGCTTAC GGTGCCCCCGCGTCCGCCAGAGAAACCGTGAGGGCGTTGTCCGCCACTTT GGTTGTGGTGACCGTTGAACCCTTGATTGAGTTAGTGGTGGGTTTTGGTT GTGTTTGCCGCGTGCTTGGCGCCTGTTTTCCGTGCGCAGGGGAAAAGAAG AGGAAGACGCCCATGAAGGAGCTGTTCGGCGTCCCGAAGCTCAAGAAGGA CGGCACTCCGGGGAACTTGTTGATCCTGCCACCGATCGACGAGATCCAAA CCGACCCCGACATGCGGGAGGACTTCATCAACTACTCGGCCTACGATGCG CAGGTGAGGTCCTTGATCGGCGGCGGAACGTGTGCTCGGCCTACAACCCC CTTTCGGAGTAGACGCGGACCGACAGTAGGAGCCACCAGTTGTTCGTTTG TGTGTTTTGAGTACGATTTTGTCGAAGCGGCGACGGCGTGCTTGATTGAT TGAGTAGCACCGCACCTATGGAATCGGGTCTTCCCGCACCAACGGTATGA GTGGTCCGCATGCTTGGTACCTGCATGCATACGATACCAGCACACCCCGT CTGTGCGTGTTTCCACCGACTTGTTTTTTTGTCTCGAGAGTGTGTCTTGT GGGTTCGTGAACAGAAATCCGCATGGCCGAGTGTGTGGCCCGACGGACGG ACGGACGCTAAGAGCCTTGGCCTGCTTGCGCTTACGAGGCGGTGGCGTCT TGTCGCCAAGAGAGCAAGTGCTGATCCTTGTGCTCGACTTAGTGCAGGTG TTGTGTTGCTGTGTCTTTTGTCCTCACGAAAGCGCGACTGTTATATGTAC AAATGCATCATTTAAATTTCATTATTTCTGTTCCTTACACTGCTGCTGTT GTTCTCGCTCCTCGCCTCGTTTTCCTTTCTCCCGTTGTTGTTTTTTGCTT GGCAGGCCACGTGGCTCGTGCACCGGGCGTTGAGGCAGAAGCTAAGGGAG ATGCCCTGGAAGGAAAACATGACCATGCTCGACTTTTACCACAAGTACTA CGTGCCGTTTGGGGAACTCCTCACCGACATGGAGCGGTGAGCGTTTGGGG CGTGCGTTTGAGAATCGGAGCGTCTGCCACAGTCGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGGGCGTGTGCGTTTGAGAATCGGAGCGTCT GCCACAGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGC TGCTGGGCGTGTGCGTTTGAGAATCGGAGCGTCTGCCACAGTCGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTCTGCTTCTGCTTCTGCTT CATTTTTCCGACCTCTTGTGGCGCTCACGCTCCGGTGTGACGGTCCGATG CGGACGCCGTTGTGGAGGCTTGTGACGCTTACATCGACGTTCATTCACTT CGGCCGCTGTGTGAGCCCTTGGTTACGTGGCGGATGCCCTCCCCGGACAC GGGCCACGCGACGAGAAACAGACTTCTACTGCTGGTGCACTAACCTTGAC GCATTTCGCGCGTCTGTTGTGCGTTGATTCATCACCCTTGTGCGCTGGCT GACATTTCAGGACGGGGATTTTCGTGGAGGCCAAGGGCTACCTTAAGGAC GTCGAGGTGCAAGCTCGGAAGGACAAGAAGAAAGCCGAGGTAGGCATTGC TGTAGCACACCTTTTCTTGTCTTGAGATACTACTGTATTCACGCCTCTTC TTGTCTTGAGAAAACTACCTTTTCTTTTGTTATGAGAAAAAATCAACTGA AAGAAGTATACCGATGCGCTTGTCGCACACCTTTTCTTGTCTTGACAAGA CTACCTTTTCTTTGTCTGGAGAAAATCAACTGAAAGGAGTACCGTTGGGC TTGGTCCAGCTCCCCCCAAGCCTAATTTCTTCGGAGCAGGCTGGCTGGCT CGTGTCTTTCCAGCGGTCGTTCCGTTTCTTGGTTTTGCCCACTGCCAAGG TGCTAAGAATTTATGGTACCAACCAAGCGTAGAGCAGCGGTAGAGATACC TACTCTGGAGCCTCCCCCTTTCCCGACACAGACTTTCTCGGCGATCCCGG TCAGAAGCACTCTGTCGATGTTTGTTTTCCGGTGATTGTTGTTGTTGTCT TGACGTTAAAAACCGTTCCCGTCTGTCCACCCAGTACCCCCTTGTCCCCT TGTCCGTACTGATCCAACACTAGCCGTGTGTTCTACTTCCCGTTGCCCGT TGTTCCGGACCAACTTTCCCTGGAAAAGGTACGTACTGACATAAAATGGA GCCGCTCCGCAAAGTGATAGATAAAAAGCGGAAACAAAAACAAATGGTCT GGAGCCCTCCGCTCCCCTGTACGCACTATCTGAGGTAACTTGCTTGACGG GAAAAGTCAATGTATCGTGATCGTTCTAGTCCCAACTTGTTCGCCTCTTC TGGTATGGACGATGCTCTTGCTTGGGCAGGAAAACTTCCTTGGGTGGGTG CAACGGATGCGGCCGGATGCAGTGGGTTTGAATCCCTCGTCCACTACCCA GATTCAGGTGAGGAGGCTGTTGTTGCTTCTTGTTGTTGTTGTTGTTGTTC TTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGTTTTTTTTTTTCTTTAT TTCAGTTGTCAACACTGTCCCAAGCGTGCAGCGTTGTTATTTTTTATTTT TTATGAATAGCGAGATTAATAATGAGCCTTTGATAGTGAGATTAATAGTG AGACTATTCGATTTATACAAGTATACTGTAGTAGTGAGATTTACAGTGAG CTTAGTAGTGAGTGATAGGATGCTGGGTGTGTGTCGCTTGGCAATGTGGC GGGACCTACCGTTATTTATCTCTGGCCGAAGTGCTTTGCAACAACAACGA GGTCGTCTTGGTCGACTTTTTCGTTCGATTCGCCCACCATCTTGTCGCTT CTTCCTTTGTGTGCCGGTGCCCTCAGACGCTGCTCTTCGGGGGGTCAAAG AACGACAAATCCGGCGACTTGCTGCCGGAGATCCGCGTCTTCAAGGTTAG AGTCTTTGTCTACATGCTGCGTCTTGATTCCGCAGTCTATATTCCCTTCC CCCAAGCCAAAAACAAAATCCAAATTAAGGAAGAACACGGCCGTGTTATC CCCTCCCTAAAACCGAAACCAAGTGTCAGAAAAACTTAAAACATGCTTGT CTCCCTCCCGATAGACTTACCCATTTATTTGTTGATACGAAAACCCACAC ATTTTTTTGTGTTTTTGTGTACCATGTGTGTGTGTGTGTAGTAGGGCGCT CTTTTTCATTTTTGGCGATTCGTTTTCGGTTCTGGTGTATTCCTTGGCGG CCCCGTTGGCTCACGGCCAGTGTTCGTAGGCGGGGGGAGAGAAGGCTCCG GTACCCGAAACCGCGAAAAGGAAAAGGTGGCGAAACGTCAACAGCCGCTC GCTTACTCCCGCACGAGTTTTTACGCTTTTTCGTATCTAAAAGTGGGGAG TATACCTCTCTGAATCTGAAACACCAGTATATTCATGCACACGCGCGGAA GCATGTGCGTTGTACATACAGTCAGGATGATACAGAGAGAGATGTTTGCC CGAATTCTTGAGTCGCTCGCACCCACCTAGCCACCCACCCAAGGAGCCAA CGCCTACAGTCCCGCGTCCCCGGCGGTGGCATCACATGACATGACATGAC ATGACATGACGTCACAGGTGGAAAGAACGGCCGAGGAGATCGAAGAGTTC AAGTCGCACAACTTGCACGACGAGTTTGACGGGTTCACCGCGGCCATGCT CAAGGAAAGGCTCAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10443:415..5230-

>mRNA_S-firma_F_contig10443.630.1 ID=mRNA_S-firma_F_contig10443.630.1|Name=mRNA_S-firma_F_contig10443.630.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1788bp|location=Sequence derived from alignment at S-firma_F_contig10443:415..5230- (Sphaerotrichia firma ET2_F female)
ATCTTGTGGGTGGACAACCTGGGGGAGGCGGACGGGACGCTCGAAGAGTT
CCGCCCGTTCTTCGAGAGCGAGAAGCACAAGAAGATCTTGTGGGTGGACA
ACCTGGGGGAGGCGGACGGGACGCTCGAAGAGTTCCGCCCGTTCTTCGAG
AGCGAGAAGCACAAGAAGGTTTGGCACAACTACGGGTTCGACAGGCACGT
CATGTTCAACTCCCCGGACGGCCGGGAGGAGCAGAGGATCAACTGCATGG
GCTTCGCGGGGGACACGATGCACATGGCGAGGCTGTGGGACACCAGCATG
GAGAAGATCTCCGGAGACACCGGGTTCTCCCTCGAGGCCTTGACGGTCAA
GCTTCTGGGTTTGGCACAACTACGGGTTCGACAGGCACGTCATGTTCAAC
TCCCCGGACGGCCGGGAGGAGCAGAGGATCAACTGCATGGGCTTCGCGGG
GGACACGATGCACATGGCGAGGCTGTGGGACACCAGCATGGAGAAGATCT
CCGGAGACACCGGGTTCTCCCTCGAGGCCTTGACGGTCAAGCTTCTGGGG
GAAAAGAAGAGGAAGACGCCCATGAAGGAGCTGTTCGGCGTCCCGAAGCT
CAAGAAGGACGGCACTCCGGGGAACTTGTTGATCCTGCCACCGATCGACG
AGATCCAAACCGACCCCGACATGCGGGAGGACTTCATCAACTACTCGGCC
TACGATGCGCAGGGGAAAAGAAGAGGAAGACGCCCATGAAGGAGCTGTTC
GGCGTCCCGAAGCTCAAGAAGGACGGCACTCCGGGGAACTTGTTGATCCT
GCCACCGATCGACGAGATCCAAACCGACCCCGACATGCGGGAGGACTTCA
TCAACTACTCGGCCTACGATGCGCAGGCCACGTGGCTCGTGCACCGGGCG
TTGAGGCAGAAGCTAAGGGAGATGCCCTGGAAGGAAAACATGACCATGCT
CGACTTTTACCACAAGTACTACGTGCCGTTTGGGGAACTCCTCACCGACA
TGGAGCGGCCACGTGGCTCGTGCACCGGGCGTTGAGGCAGAAGCTAAGGG
AGATGCCCTGGAAGGAAAACATGACCATGCTCGACTTTTACCACAAGTAC
TACGTGCCGTTTGGGGAACTCCTCACCGACATGGAGCGGACGGGGATTTT
CGTGGAGGCCAAGGGCTACCTTAAGGACGTCGAGGTGCAAGCTCGGAAGG
ACAAGAAGAAAGCCGAGGACGGGGATTTTCGTGGAGGCCAAGGGCTACCT
TAAGGACGTCGAGGTGCAAGCTCGGAAGGACAAGAAGAAAGCCGAGGAAA
ACTTCCTTGGGTGGGTGCAACGGATGCGGCCGGATGCAGTGGGTTTGAAT
CCCTCGTCCACTACCCAGATTCAGGAAAACTTCCTTGGGTGGGTGCAACG
GATGCGGCCGGATGCAGTGGGTTTGAATCCCTCGTCCACTACCCAGATTC
AGACGCTGCTCTTCGGGGGGTCAAAGAACGACAAATCCGGCGACTTGCTG
CCGGAGATCCGCGTCTTCAAGACGCTGCTCTTCGGGGGGTCAAAGAACGA
CAAATCCGGCGACTTGCTGCCGGAGATCCGCGTCTTCAAGGTGGAAAGAA
CGGCCGAGGAGATCGAAGAGTTCAAGTCGCACAACTTGCACGACGAGTTT
GACGGGTTCACCGCGGCCATGCTCAAGGAAAGGCTCAAGGTGGAAAGAAC
GGCCGAGGAGATCGAAGAGTTCAAGTCGCACAACTTGCACGACGAGTTTG
ACGGGTTCACCGCGGCCATGCTCAAGGAAAGGCTCAAG
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