mRNA_S-firma_F_contig10442.629.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10442.629.1
Unique NamemRNA_S-firma_F_contig10442.629.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10442.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10442contigS-firma_F_contig10442:3599..3778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog38833.XP_003061201.1
Preferred namethsd7a
PFAMsEGF_2,EGF_CA,Notch,TSP_1
Max annot lvl2759|Eukaryota
KEGG koko:K08624,ko:K08632,ko:K09109
KEGG Pathwayko05202,map05202
Evalue2.38e-08
EggNOG OGsKOG3538@1|root,KOG3538@2759|Eukaryota
DescriptionA disintegrin and metalloproteinase with thrombospondin motifs
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.6468453-CDS-S-firma_F_contig10442:3598..37781622815578.6468453-CDS-S-firma_F_contig10442:3598..3778Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10442 3599..3778 +
1696949430.5270138-CDS-S-firma_F_contig10442:3598..37781696949430.5270138-CDS-S-firma_F_contig10442:3598..3778Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10442 3599..3778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10442.629.1prot_S-firma_F_contig10442.629.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10442 3599..3778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10442.629.1

>prot_S-firma_F_contig10442.629.1 ID=prot_S-firma_F_contig10442.629.1|Name=mRNA_S-firma_F_contig10442.629.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=60bp
LAFSWDTAHVFGACNATCGGGLQWRHVPCVANDVGATVVDDERCGAPQPL
TWVRCNAHAC
back to top

mRNA from alignment at S-firma_F_contig10442:3599..3778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10442.629.1 ID=mRNA_S-firma_F_contig10442.629.1|Name=mRNA_S-firma_F_contig10442.629.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=180bp|location=Sequence derived from alignment at S-firma_F_contig10442:3599..3778+ (Sphaerotrichia firma ET2_F female)
CTGGCGTTTTCGTGGGACACCGCCCACGTCTTTGGCGCCTGCAACGCCAC
GTGCGGAGGTGGCCTCCAGTGGAGGCACGTGCCCTGCGTTGCCAACGACG
TGGGGGCGACGGTGGTGGACGACGAGCGGTGTGGGGCTCCCCAGCCGCTG
ACGTGGGTGCGGTGCAACGCACACGCTTGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10442:3599..3778+

>mRNA_S-firma_F_contig10442.629.1 ID=mRNA_S-firma_F_contig10442.629.1|Name=mRNA_S-firma_F_contig10442.629.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=360bp|location=Sequence derived from alignment at S-firma_F_contig10442:3599..3778+ (Sphaerotrichia firma ET2_F female)
CTGGCGTTTTCGTGGGACACCGCCCACGTCTTTGGCGCCTGCAACGCCAC
GTGCGGAGGTGGCCTCCAGTGGAGGCACGTGCCCTGCGTTGCCAACGACG
TGGGGGCGACGGTGGTGGACGACGAGCGGTGTGGGGCTCCCCAGCCGCTG
ACGTGGGTGCGGTGCAACGCACACGCTTGCCTGGCGTTTTCGTGGGACAC
CGCCCACGTCTTTGGCGCCTGCAACGCCACGTGCGGAGGTGGCCTCCAGT
GGAGGCACGTGCCCTGCGTTGCCAACGACGTGGGGGCGACGGTGGTGGAC
GACGAGCGGTGTGGGGCTCCCCAGCCGCTGACGTGGGTGCGGTGCAACGC
ACACGCTTGC
back to top