mRNA_S-firma_F_contig10440.624.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: D8LQ70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ70_ECTSI) HSP 1 Score: 480 bits (1235), Expect = 8.860e-161 Identity = 272/405 (67.16%), Postives = 300/405 (74.07%), Query Frame = 1
Query: 1 VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLPVQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQFEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQTPP-ALRIEADGGNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPRAFSDEGGARHSITSTGXXXXXXXXXXXXXGTPGTRIALSPPK-KRGLPSGASLKILQAATGVAVIPSAATPTTQHTQPDNKLPLDNTAQAGSPWLEVETGIETCAA-AEDEEAGISL 1206
VVWPD+TLGDVL+VFKQGKSHL LVRDVN++GEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFV+++NQLPVQRS+FDMSRLQLLNANAD+SALSTDEAKAVASHLMANVPQFEG+NVSHVESIIAASPVVEV+KE+KH GR+EPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEG YKPDFSAHAGSERLRCVRISKASFDT+ SMS+QE + P A R E GG PRAFSDEG + +T G RI LSP K +RGLP+GASLKILQAATGVA+ S+ T T ++ PL+ AQ SP + G A+ EE GIS+
Sbjct: 295 VVWPDFTLGDVLNVFKQGKSHLSLVRDVNDAGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVDMQNQLPVQRSQFDMSRLQLLNANADKSALSTDEAKAVASHLMANVPQFEGINVSHVESIIAASPVVEVNKEDKHTGRSEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGAYKPDFSAHAGSERLRCVRISKASFDTVMSMSKQEEEEPHHASRAEPHGGGNT--------DGNNTDGSGNNKAGVTGYVRKSGPKPRAFSDEGSRHQADPATSGSVGAVGAGTKAAG----RITLSPSKIRRGLPTGASLKILQAATGVAMTTSSTTSTPMRSKHTEDEPLE--AQEASPREDTGAGASAVASNGTAEETGISM 685
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A835YX11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX11_9STRA) HSP 1 Score: 247 bits (630), Expect = 4.480e-73 Identity = 125/228 (54.82%), Postives = 166/228 (72.81%), Query Frame = 1
Query: 4 VWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLP-VQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQFEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTI 684
VWPD LGDVL VFK ++H+ +VRDVN+SG GDPFYEV GIITLEDIIEE+LGDEI+DETD +V + +R + +RL LLNA+ + LS +EA AVA+HL ANV QF ++ V +++AAS VV + +E A PA A+ LYRRGR ST CTL+LTG++ V AGRD F+S++GPW+VLGADAL+ EG Y+PDFSA S++LR +R+++A+F +
Sbjct: 245 VWPDQPLGDVLKVFKGQRAHMAIVRDVNSSGPGDPFYEVAGIITLEDIIEEVLGDEILDETDTLEHVASTAQRAERCNVEATRLHLLNASTTENKLSREEASAVAAHLSANVEQFGALSKEAVTAVVAASTVVTLRREAS--AGAAPAAADYLYRRGRVSTACTLVLTGRLTVAAGRDAFQSESGPWSVLGADALLAAEGAYRPDFSASISSDQLRVIRMNRATFAAL 470
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A835ZG32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG32_9STRA) HSP 1 Score: 250 bits (638), Expect = 2.140e-72 Identity = 131/243 (53.91%), Postives = 171/243 (70.37%), Query Frame = 1
Query: 1 VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLP--VQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQFEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQTPPA 723
+VWPD LGDVL VFKQG++H+ +VR VN++G GDP+YEV GIITLEDIIEEILGD+I+DE D ++ + R+ FD +RLQLLNA+A LS +EA AVA+HL NV QF G + V +++AASPV+ + + + G A A + LYRRGR S CTL+LTG++ V AGRD F SDAGPW+VL ADAL+ EG YKPDFSA S+ LR VR+S+A+F+ + ++ TPPA
Sbjct: 363 IVWPDQKLGDVLKVFKQGRAHMAVVRQVNDTGPGDPYYEVAGIITLEDIIEEILGDDILDEHDCTLDHVERTGHRAARAAFDATRLQLLNASAQEERLSREEAAAVAAHLSTNVEQFRGFSRERVAAVVAASPVLMLRRAGEAGGAA--AAEDYLYRRGRVSAACTLVLTGRLSVAAGRDEFPSDAGPWSVLAADALLSPEGHYKPDFSARVASDALRIVRMSRATFEVV----KEAPVTPPA 599
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S1B913_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B913_9STRA) HSP 1 Score: 213 bits (542), Expect = 5.540e-58 Identity = 116/245 (47.35%), Postives = 154/245 (62.86%), Query Frame = 1
Query: 4 VWPDYTLGDVLSVFKQGKSHLGLVRDVNNSG-EGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLPVQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQ-FEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQTPPALRI 732
VWPD LGDVL FKQGK H+ +VRDVN S + DPFYEV GIITLEDI+E ILGDEIVDETD +V VE +PV R FD SRL+LL+ LS DE +AV++HL N FE ++ +++++A + V E+ G+ P+ +LY RG+ + +CTL+L GK+ +LAG+DGFRS+ GPW+VL A ALV Y PDF A SE+ R +R F + + G+ P +I
Sbjct: 334 VWPDDPLGDVLRYFKQGKGHIAVVRDVNGSDPDRDPFYEVRGIITLEDILEVILGDEIVDETDVYVEVEKHVPVDRETFDWSRLRLLDDKIVDVHLSPDEVRAVSAHLRTNYADIFEKLDNIQLKTMVAGTVVAEIEAAAMESGKNMPSSQNLLYERGQETEVCTLLLNGKITILAGKDGFRSEVGPWSVLAAQALVAPG--YVPDFDAFVASEKCRMLRFQLPRFHVAVAATGGGGE--PTTKI 574
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S4D856_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D856_HETAK) HSP 1 Score: 206 bits (524), Expect = 6.950e-57 Identity = 119/274 (43.43%), Postives = 169/274 (61.68%), Query Frame = 1
Query: 1 VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLP--VQRSEFDMSRLQLLNANADRSA-LSTDEAKAVASHLMANVPQFEG-------VNVSHVESIIAASPVVEVSKENKHMG-------------------RAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVE--DEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQTPPALR 729
V +PD LG+VL++FK+G+ H+ LVR VNN G GDP+YE +G+ITLEDI+EEILGDEIVDETD FV+V+++ V+ ++FD S+L LL+ R A L +E A+ ++LMANVP+F+ ++ VE I+ S V+E+ + + G AEPAP E LYRRG + L+L+GK++V AGRDGFR++AGPWT L A AL +G + PDF A+AG+E +R +R+ + + +EG PP R
Sbjct: 287 VAYPDQKLGEVLAMFKKGQGHMALVRKVNNDGPGDPYYEGMGLITLEDIVEEILGDEIVDETDVFVDVDDKTSRVVRETQFDYSKLTLLDDKLGRDATLGPEEVVAIRTYLMANVPEFQAPTKDGSPLSAEAVEYILRNSTVLEIEGQEEAAGGAPGALSARGXXXXXXXXXXAEPAPEEFLYRRGEVAAAAALVLSGKLLVRAGRDGFRAEAGPWTALAAGALTAATPQG-FAPDFDAYAGAEPVRLLRVPRQVY--------REGLRPPGDR 551
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S2SUL8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUL8_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.960e-55 Identity = 102/230 (44.35%), Postives = 153/230 (66.52%), Query Frame = 1
Query: 4 VWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLP--VQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQFE----GVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASF 675
V+PD LGDVL +FK+G+ H+ +VRD + D Y VGIITLEDI+E ILGDEI+DETD +V+++ + ++R +FD ++L L++ LS +E AV +HL N QF+ G ++ + S + +S + G ++P ++LYRRGR S+ TL+L+G++ V+AG+DGFRSDAGPWTVLG DAL+++EG Y PDF+A+ +E +RC+R+S+ F
Sbjct: 329 VFPDEKLGDVLVMFKRGQGHMAIVRDTEEREDADNVYINVGIITLEDIVESILGDEIIDETDVYVHMDKKASSRIERKQFDYAQLSLMDPTLHDGFLSLEEVNAVTAHLCMNYRQFQETPGGERIAQDDVRKMVSKLTALSLVREGNGTSDPPGKDMLYRRGRASSTMTLVLSGRLAVVAGKDGFRSDAGPWTVLGCDALLQEEGGYIPDFTAYIATENVRCIRMSRFDF 558
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A1Z5KAI0_FISSO (Metal transporter CNNM n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAI0_FISSO) HSP 1 Score: 196 bits (499), Expect = 5.050e-53 Identity = 109/239 (45.61%), Postives = 150/239 (62.76%), Query Frame = 1
Query: 4 VWPDYTLGDVLSVFKQGKSHLGLVRDVNNS-GEGDPFYEVVGIITLEDIIEEILGDEIVDETDAFVN-VENQLPVQRSEFDMSRLQLLNANADRSALSTDEAKAVASHLMAN-VPQFEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQ 711
VWPD LGDVL K G+SH+ LVRDVNN G+ DPFYEV GIITLEDIIEEILGDEIVDETDAFV+ +L + F+ +RL+LL++ LS +E +A+ +HL N +E ++ E +++ S V+ + + + +G +P P ++LY +G + +CTL+L+GKV V G + FR+D G W+VLG AL YK DF A S RC+RI++A F+ S E Q
Sbjct: 355 VWPDDKLGDVLRELKTGRSHMALVRDVNNEDGDQDPFYEVKGIITLEDIIEEILGDEIVDETDAFVDGTHTELVTRTDGFEWARLRLLDSKLLDERLSVEETRAITAHLQRNHFSTWELLSDRQAELLVSGSQVITLPEVVREIG--QPLPRDLLYTKGEETDVCTLLLSGKVTVFVGEENFRTDLGSWSVLGIGALTNPN--YKADFDAFVSSGPCRCLRITRARFNAAVDASAAEEQ 589
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S3LGG6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGG6_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.220e-51 Identity = 112/239 (46.86%), Postives = 149/239 (62.34%), Query Frame = 1
Query: 4 VWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEG-DPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLPVQRSE-FDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQFEGVNVSH-VESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQ 711
VWPD LGDVL KQGKSH+ LV+DVNN E DPFYEV GIITLEDIIEEI+G EIVDETD +V+ + +PV R E F + L+LL++ LS DE +AV +HL+ N + H +E +IA +PV + + +G+ P ++LY + + + CTLIL+GKV VLAG D FR+D W+VL + AL + Y PDFSA+ S RC+R+++A F S E Q
Sbjct: 383 VWPDDKLGDVLRDLKQGKSHMALVQDVNNEDESKDPFYEVKGIITLEDIIEEIIGVEIVDETDEYVDGTHSVPVDRGETFKWASLRLLDSKIVDETLSYDETQAVTAHLLRNYYDVVSLLTEHQLEHLIATTPVSVLPTATEELGKL--LPDDLLYEKNKPNDTCTLILSGKVKVLAGADNFRTDVSSWSVLASKALADK--AYAPDFSAYVSSGPCRCLRLTRARFLAAVDASTVERQ 617
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S2R398_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R398_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.380e-51 Identity = 107/238 (44.96%), Postives = 145/238 (60.92%), Query Frame = 1
Query: 1 VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEG-DPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLPVQRS-EFDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQ-FEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQE 705
VVWPD LGDVL K G SH+ LVRDVNN E DPFYE+ GIITLEDIIE ILGDEIVDETDA+V+ E + V R+ +FD ++L+LL++ LS +E +A+++HL N + ++ + +I +PV + +G + P +LY +G+ CTLIL+GKV VLAG D FRSD W VL A+AL +Y PDF+A+ E RC+ ++ +F S E
Sbjct: 1 VVWPDDRLGDVLRKLKGGHSHMALVRDVNNDDETQDPFYEIKGIITLEDIIEIILGDEIVDETDAWVDGEQSVKVDRTVDFDWAKLRLLDSKIVDETLSQEEVRAISAHLRTNHSSAVQLLSDKQLNRMITLTPVTVLQASEMDIGNS--LPDNLLYEKGKPCGFCTLILSGKVTVLAGSDNFRSDISSWCVLAANALTNK--SYAPDFNAYVTGESCRCLIFTRHNFSAAIDSSAVE 234
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Match: A0A7S2Y3V5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y3V5_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.660e-51 Identity = 107/240 (44.58%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 1 VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEG-DPFYEVVGIITLEDIIEEILGDEIVDETDAFVNVENQLPVQRSE-FDMSRLQLLNANADRSALSTDEAKAVASHLMANVPQ-FEGVNVSHVESIIAASPVVEVSKENKHMGRAEPAPAEVLYRRGRTSTMCTLILTGKVVVLAGRDGFRSDAGPWTVLGADALVEDEGTYKPDFSAHAGSERLRCVRISKASFDTITSMSRQEGQ 711
VVWPD LG VL K GKSH+ LVRDVNN E DPFYE+ GIITLEDIIEEI+G EIVDETDAFV+ + +PV R+E F + L+LL++ LS DE KAV +HL N F + + + +I +P+ + + + + P ++LY RG + CTL+L+GK+ V+AG+D FRSD W++L +AL+ Y PDF++ S RC++I++A F + S+ E Q
Sbjct: 113 VVWPDDALGGVLRDLKSGKSHMALVRDVNNEDESQDPFYEIKGIITLEDIIEEIIGHEIVDETDAFVDGTHSVPVDRAETFKWASLRLLDSKIVDERLSFDETKAVTAHLSKNFAAIFTFLTEAQLHRLILETPISVLPTAVQQLSK--DLPDDLLYERGVQTNTCTLVLSGKLTVIAGQDNFRSDVSSWSLLAGNALLSKH--YTPDFTSFVSSGPCRCLQITEARFASAVDASQLEKQ 348 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10440.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10440.624.1 >prot_S-firma_F_contig10440.624.1 ID=prot_S-firma_F_contig10440.624.1|Name=mRNA_S-firma_F_contig10440.624.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=442bp VVWPDYTLGDVLSVFKQGKSHLGLVRDVNNSGEGDPFYEVVGIITLEDIIback to top mRNA from alignment at S-firma_F_contig10440:226..4417+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10440.624.1 ID=mRNA_S-firma_F_contig10440.624.1|Name=mRNA_S-firma_F_contig10440.624.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4192bp|location=Sequence derived from alignment at S-firma_F_contig10440:226..4417+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10440:226..4417+ >mRNA_S-firma_F_contig10440.624.1 ID=mRNA_S-firma_F_contig10440.624.1|Name=mRNA_S-firma_F_contig10440.624.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2652bp|location=Sequence derived from alignment at S-firma_F_contig10440:226..4417+ (Sphaerotrichia firma ET2_F female)back to top |