mRNA_S-firma_F_contig10435.619.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10435.619.1
Unique NamemRNA_S-firma_F_contig10435.619.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10435.619.1 vs. uniprot
Match: A0A6H5KY72_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY72_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.370e-9
Identity = 40/74 (54.05%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  160 RERAASERIRLDGGG----TTPTRRPRHPVDAWGTPPASVSHRRGQGSTSSAMTGSVSSXXXXXXXXXXVATGG 369
            RER   E +  DG G     TPTRRPR PVDAWGTPPAS SHRRG  S  S  TGSVS           V T G
Sbjct:  894 RERQCEESVAFDGSGKDEANTPTRRPRPPVDAWGTPPASTSHRRG--SPISTATGSVSGGDGGASNSESVPTSG 965
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BLAST of mRNA_S-firma_F_contig10435.619.1 vs. uniprot
Match: D8LIZ3_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-6
Identity = 35/58 (60.34%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:  160 RERAASERIRLDGGG----TTPTRRPRHPVDAWGTPPASVSHRRGQGSTSSAMTGSVS 321
            RER + E    DG G     TPTRRPR PVDAWGTPP S S RRG    SS  TGSVS
Sbjct:  831 RERQSEEPAAFDGSGKDGANTPTRRPRPPVDAWGTPPDSTSRRRGP--LSSVATGSVS 886
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10435.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY72_9PHAE8.370e-954.05Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LIZ3_ECTSI1.620e-660.34Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10435contigS-firma_F_contig10435:3546..3921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LIZ3
Preferred nameKIF6
PFAMsKinesin
Max annot lvl2759|Eukaryota
KEGG koko:K10397
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Evalue2.66e-07
EggNOG OGsCOG5059@1|root,KOG4280@2759|Eukaryota
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.7697413-CDS-S-firma_F_contig10435:3545..39201622815577.7697413-CDS-S-firma_F_contig10435:3545..3920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10435 3546..3920 +
1696949430.0155377-CDS-S-firma_F_contig10435:3545..39201696949430.0155377-CDS-S-firma_F_contig10435:3545..3920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10435 3546..3920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10435.619.1prot_S-firma_F_contig10435.619.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10435 3546..3920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10435.619.1

>prot_S-firma_F_contig10435.619.1 ID=prot_S-firma_F_contig10435.619.1|Name=mRNA_S-firma_F_contig10435.619.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=125bp
TKPKPRHLDHNNTHPRAAAAAAHHHPPPNNNSVGSLDNQQDAVATPTSST
ARERERAASERIRLDGGGTTPTRRPRHPVDAWGTPPASVSHRRGQGSTSS
AMTGSVSSGGGGGGGGGSVATGGGR
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mRNA from alignment at S-firma_F_contig10435:3546..3921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10435.619.1 ID=mRNA_S-firma_F_contig10435.619.1|Name=mRNA_S-firma_F_contig10435.619.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=376bp|location=Sequence derived from alignment at S-firma_F_contig10435:3546..3921+ (Sphaerotrichia firma ET2_F female)
ACAAAGCCAAAGCCTCGCCACCTCGACCACAACAACACCCATCCTCGAGC
AGCAGCAGCAGCAGCGCACCACCACCCCCCTCCGAACAACAACAGCGTCG
GCAGCCTCGACAACCAACAAGATGCTGTTGCGACGCCGACATCATCGACA
GCGCGCGAGAGAGAACGTGCCGCATCAGAAAGAATACGGCTCGACGGGGG
AGGTACCACCCCGACGAGGCGACCAAGGCATCCCGTCGATGCCTGGGGAA
CTCCCCCCGCCTCCGTTAGTCATCGGAGAGGGCAAGGGTCGACGTCTTCT
GCGATGACCGGGAGTGTTTCAAGTGGTGGCGGCGGCGGCGGCGGCGGTGG
ATCGGTAGCGACCGGTGGAGGCAGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10435:3546..3921+

>mRNA_S-firma_F_contig10435.619.1 ID=mRNA_S-firma_F_contig10435.619.1|Name=mRNA_S-firma_F_contig10435.619.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=750bp|location=Sequence derived from alignment at S-firma_F_contig10435:3546..3921+ (Sphaerotrichia firma ET2_F female)
ACAAAGCCAAAGCCTCGCCACCTCGACCACAACAACACCCATCCTCGAGC
AGCAGCAGCAGCAGCGCACCACCACCCCCCTCCGAACAACAACAGCGTCG
GCAGCCTCGACAACCAACAAGATGCTGTTGCGACGCCGACATCATCGACA
GCGCGCGAGAGAGAACGTGCCGCATCAGAAAGAATACGGCTCGACGGGGG
AGGTACCACCCCGACGAGGCGACCAAGGCATCCCGTCGATGCCTGGGGAA
CTCCCCCCGCCTCCGTTAGTCATCGGAGAGGGCAAGGGTCGACGTCTTCT
GCGATGACCGGGAGTGTTTCAAGTGGTGGCGGCGGCGGCGGCGGCGGTGG
ATCGGTAGCGACCGGTGGAGGCAGAACAAAGCCAAAGCCTCGCCACCTCG
ACCACAACAACACCCATCCTCGAGCAGCAGCAGCAGCAGCGCACCACCAC
CCCCCTCCGAACAACAACAGCGTCGGCAGCCTCGACAACCAACAAGATGC
TGTTGCGACGCCGACATCATCGACAGCGCGCGAGAGAGAACGTGCCGCAT
CAGAAAGAATACGGCTCGACGGGGGAGGTACCACCCCGACGAGGCGACCA
AGGCATCCCGTCGATGCCTGGGGAACTCCCCCCGCCTCCGTTAGTCATCG
GAGAGGGCAAGGGTCGACGTCTTCTGCGATGACCGGGAGTGTTTCAAGTG
GTGGCGGCGGCGGCGGCGGCGGTGGATCGGTAGCGACCGGTGGAGGCAGA
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