mRNA_S-firma_F_contig104.581.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig104.581.1
Unique NamemRNA_S-firma_F_contig104.581.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig104.581.1 vs. uniprot
Match: D8LHM4_ECTSI (ATP synthase protein I, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHM4_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.470e-62
Identity = 144/262 (54.96%), Postives = 166/262 (63.36%), Query Frame = 2 
Query:   38 MKIHRRG--LALMGAGLLSSPCLAFAPGSYPIHGAPAL--RSSTTSC--------DQKWAP-NSHKHRETSPQRRSRGARRRSGVLV-------------------------GLAAEAQERGAEGGRAAKREPTQQEREDEINKLVFVAETMSSSKMMTIDSFGPEQSASARRGGKSRANNAAP-SYAAQEPMLPQAIARQKRLFEKRKWRLIGDNVFLGLLGTSGAWVVSFKAACSYGLGATLGTAYLVLLSRFVESLGND 706
            M   RRG  LA+    LLSS CLAFAP ++ +     +  R STT+C         Q   P N+   R +S QR  R  RRR G L                          G+A EA         +   E TQ+E+EDEINKLV+V E +SSSKMMTIDSFGPEQSASARRG KS+ NNA+  SY+  EPMLP+AIARQKRL+EKRKWRLIGDN FLGLLGT+GAW  S KAACSYGLGATLGTAYLVLLSRFVE+LGN+
Sbjct:    1 MTTRRRGSALAVCAVSLLSSTCLAFAPAAHQLRAVRPVSPRGSTTACGTSLNQEAQQPTRPRNTRSLRISSRQRSRRDGRRRLGELETRGGAAVVALAXXXXXXXXXXXXXSGVAVEA---------SKAEELTQEEKEDEINKLVYVTEVLSSSKMMTIDSFGPEQSASARRGKKSKTNNASTQSYSTPEPMLPEAIARQKRLYEKRKWRLIGDNFFLGLLGTAGAWGFSLKAACSYGLGATLGTAYLVLLSRFVENLGNE 253
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BLAST of mRNA_S-firma_F_contig104.581.1 vs. uniprot
Match: A0A7S2V8J1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8J1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.890e-8
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 2 
Query:  329 QEREDEINKLVFVA--ETMSSSKMMTIDSFGPEQSASARRGGKSRANNAAPS-YAAQEPMLPQAIARQKRLFEKRKWRLIGDNVFLGLLGTSGAW-VVSFKAACSYGLGATLGTAYLVLLSRFVESL 697
            +ERE E+N+  + A    M+ SK+      G ++   AR   K R     P         L      ++  F KRK  L+GD++F+  LG    W V+  + A SYG+GA LG AYLVLLSRFVE L
Sbjct:  113 EERERELNRAYYAAMPNLMTISKVSEDPWAGTKRRVQAREAAKRRPGAGLPDPKKIGSKKLATIQKEEEERFAKRKLGLLGDHIFISCLGGGFCWSVLGLQTAESYGVGAALGLAYLVLLSRFVEGL 239
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHM4_ECTSI2.470e-6254.96ATP synthase protein I, putative n=2 Tax=Ectocarpu... [more]
A0A7S2V8J1_9STRA2.890e-837.80Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:51563..55581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionATP synthase protein I
Ec32 orthologEc-26_003670.1
Exons5
Model size1735
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.467741-UTR-S-firma_F_contig104:51562..524391622815573.467741-UTR-S-firma_F_contig104:51562..52439Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 51563..52439 -
1696949426.5960782-UTR-S-firma_F_contig104:51562..524391696949426.5960782-UTR-S-firma_F_contig104:51562..52439Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 51563..52439 -
1622815573.4821033-UTR-S-firma_F_contig104:53193..532581622815573.4821033-UTR-S-firma_F_contig104:53193..53258Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 53194..53258 -
1696949426.6292386-UTR-S-firma_F_contig104:53193..532581696949426.6292386-UTR-S-firma_F_contig104:53193..53258Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 53194..53258 -
1622815573.5328054-UTR-S-firma_F_contig104:55544..555811622815573.5328054-UTR-S-firma_F_contig104:55544..55581Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 55545..55581 -
1696949426.734567-UTR-S-firma_F_contig104:55544..555811696949426.734567-UTR-S-firma_F_contig104:55544..55581Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 55545..55581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.4923658-CDS-S-firma_F_contig104:53258..535431622815573.4923658-CDS-S-firma_F_contig104:53258..53543Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 53259..53543 -
1696949426.6677632-CDS-S-firma_F_contig104:53258..535431696949426.6677632-CDS-S-firma_F_contig104:53258..53543Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 53259..53543 -
1622815573.5051062-CDS-S-firma_F_contig104:53902..540521622815573.5051062-CDS-S-firma_F_contig104:53902..54052Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 53903..54052 -
1696949426.6898913-CDS-S-firma_F_contig104:53902..540521696949426.6898913-CDS-S-firma_F_contig104:53902..54052Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 53903..54052 -
1622815573.5143828-CDS-S-firma_F_contig104:54546..547321622815573.5143828-CDS-S-firma_F_contig104:54546..54732Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 54547..54732 -
1696949426.7050216-CDS-S-firma_F_contig104:54546..547321696949426.7050216-CDS-S-firma_F_contig104:54546..54732Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 54547..54732 -
1622815573.5237317-CDS-S-firma_F_contig104:55409..555441622815573.5237317-CDS-S-firma_F_contig104:55409..55544Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 55410..55544 -
1696949426.7223198-CDS-S-firma_F_contig104:55409..555441696949426.7223198-CDS-S-firma_F_contig104:55409..55544Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 55410..55544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.581.1prot_S-firma_F_contig104.581.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig104 53259..55544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig104.581.1

>prot_S-firma_F_contig104.581.1 ID=prot_S-firma_F_contig104.581.1|Name=mRNA_S-firma_F_contig104.581.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=252bp
MKIHRRGLALMGAGLLSSPCLAFAPGSYPIHGAPALRSSTTSCDQKWAPN
SHKHRETSPQRRSRGARRRSGVLVGLAAEAQERGAEGGRAAKREPTQQER
EDEINKLVFVAETMSSSKMMTIDSFGPEQSASARRGGKSRANNAAPSYAA
QEPMLPQAIARQKRLFEKRKWRLIGDNVFLGLLGTSGAWVVSFKAACSYG
LGATLGTAYLVLLSRFVESLGNDGEGGGGGGGRGGGGGEGRRGLRWRGCW
C*
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mRNA from alignment at S-firma_F_contig104:51563..55581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig104.581.1 ID=mRNA_S-firma_F_contig104.581.1|Name=mRNA_S-firma_F_contig104.581.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4019bp|location=Sequence derived from alignment at S-firma_F_contig104:51563..55581- (Sphaerotrichia firma ET2_F female)
ATGGCGCCTCCTTCCAGCACGCCCTACGCGAAAGACTATGAAGATACACC
GAAGAGGGCTAGCGCTGATGGGCGCGGGACTCTTGTCTTCACCGTGCCTT
GCTTTTGCGCCGGGTTCGTACCCGATTCATGGCGCACCAGCATTGAGGTC
ATCAACTACCTCCTGCGATCAGGTGAGCCTGGCACAACATCATGTGTCAT
GCTGCCACTCACGGCTGTTTGGACAGCTGCTGTGTTGCCAGGGAGAGCGC
GCCACCCACTGCAGTGCACTGAAGATACAGCAGTAGACTAGACACACCGT
ATGCTTGTAGTGCTGTCCCTTGGTGATTAGCACATTAGGAGACTTGTGGG
GCGAGGTATATCGTTGTATGCAAACCCCTCACCGGCTGTACTGCGAGGTA
CAGCATCAGCGGAGGGGTTCGCATCCCCCTCCTCTAACACACCAATACAC
GCTCCCAGAGTCAAACACAAACTATCATGGTAACTAAATGGAAGTGCATC
ATCTGCCGGATTAACTCTTCCCGGTCTACATAGATTTTAGCAATCACCGC
CTACGATACAACTAACCGCAGCGGCAGCGACGGGCGTTGCTCTGGTCATG
ACGAAGCAACCCATCGCAGTGCCCCAGTAACCAATAACACCCTTGAGATT
GCAGCCGATGCTTTGTCTCCCGAAACGGGTACAAATGCTCTGCCCTGGCG
GTAGCTCGACTTCGAATGTGTGTATCTAGCATCCAGTTCCAGGTTCCAGG
TAGCCGTCAAGACACTTATCTGCCCCTCCCCTCCGTTCCCAACCGAACTG
CCCCCCCCCCCGCGAAAACAACGCCTCACACGGCCGGATGCACCGGCAGA
AATGGGCGCCGAACAGCCACAAGCACCGAGAAACGTCACCCCAACGACGT
TCTCGTGGCGCGCGGAGACGTTCGGGCGTTTTGGTGGGGCTTGCCGCCGA
GGCGCAGGAGCGAGGAGCGGAGGGGGGGCGCGCGGCGAAGAGAGAACCCA
CGCAGCAAGAAAGGGAGGACGAGATCAACAAGCTGGTGCGTGTGATTTTT
TATGTGGTTCCTGTTGACTTCGTCGTTGTCATTTGCCAGTGTCGAAAGGT
TTGTTTTGTCGGTGCAGCCGCGGTTGAATGATTCGGCTGCTTGTCGGGTA
CGGTTAGACCCAATTTCCAGGGCGATGACGTGACACCGCCGTGGAAGGTG
AATATTGAAGGTGAATGCTCTCTCACATGTAGTACTACTACTGCTGTGTC
CTGCGATTAAAAGCTGCATAGATTGCAGCCCAATCCACATGTAAAGACTG
CAGCGCTGGGTGTTAACCAAAAGGCTCGGCCTGGCGAGAGGACGACGCCG
CAATCGTCACCCTGCGTGCCTCTCTCTCCCTGTCGCCATGCCAGATGGCA
CATGGAAGTATTTTTTACGTCAAGATTATACCGATGCGCAAAATTTCGCG
ACGCTCGTCGTGCTTGGCCCTGCCGCTGATGCTCTGCTGTGCTTTGGGCC
TTGCGGAACGGATTTTTCAACCAACCCAGGTGTTTGTGGCGGAGACCATG
TCTTCATCCAAGATGATGACCATTGACTCCTTCGGGCCGGAGCAATCTGC
ATCGGCAAGGAGAGGGGGTAAAAGCAGGGCAAACAACGCCGCGCCTTCGT
ACGCCGCACAGGAGCCAATGCTCCCACAGGTGAGAAGTGTGTGGAGGCTC
GGGCGTGAGGGGTAGGGGGTGCACCCGAAGTCGTGGCACACTCCTCGTGA
TCACCTTGATAGGAGTGGCTGTGTTCGAGAAGATACCGGGAAGTTGCCGC
CACCCAACGGCAGCTACAAGTAGAACCCCCATTTGAAACTTAAACCGCGG
GCATGGTTATGCCGCCATGCAAGCGATCGCCACAGGCCAAGACTTCCCCG
TTCCGGAGAACGCAGAAATCTCCATACTTCGAAGCACTGATGGAATACAC
ATGACTCGATACTCGTCGATACTGCATCTTGACGTACACACGAAACAGCA
ATGTCCTCGTGTCCTGTTCCGCGTTGCCCCTTCACCAGGCGATCGCAAGG
CAGAAGCGGCTCTTTGAGAAGAGAAAGTGGCGCCTCATCGGCGACAACGT
CTTCCTCGGCCTCCTCGGCACCAGCGGCGCCTGGGTCGTCTCCTTCAAGG
CGGCCTGCAGCTACGGCCTCGGGGCGACGCTGGGCACTGCCTATCTCGTC
CTACTGAGCCGCTTCGTGGAGAGTCTCGGGAACGACGGCGAGGGCGGGGG
CGGCGGGGGCGGGAGGGGGGGGGGGGGGGGGGAGGGCCGGCGAGGCTTGC
GCTGGCGGGGCTGCTGGTGCTGATCGTGTCCAAGAACAAGGAGACCTTTG
ATTTTATTCCCTCGCTAGGGGGCTTCTTGGCTTACCAGGTGGGTGTGTGC
CACATGTTTTAGAGAAAGGGGACGGGCGTTGACCGACGGAGATACGACGG
GAGCAGAAGGTCGAATGTCGGTATTTGTAGTTGCCAAAATGCGCGGCTAG
TAACCCCGCTTACATACACCGCAGGAGGGGGTGTCCTGTGTGACCCCGGG
TGGGTCGTCTAGCTAGTCGTAGTGGAGGATAGGGGCCAGGAGGGTAGACG
ACAGAAAACACTAATGGGGGGAAAATAAATAAATATTATATACATATGTA
GGGCACCGCAGCAGGGGGTCTACCCCCCCCTCCTGTGTGACCCCGGTTGG
GTCGTCTAGTTAGTCGAAGTGGAGGATAGGGGCCATTGGGGCTGACGACA
GAATCCAATCATGCGACGAAAATAACTAAACACGGAGTAATACGAAGTAA
ATATATTGGGCAAGTCCTTCGTCGCCCCTTCTGCATTGCAGACCTGTTCC
CGACGTTTGCTTCCCGTCCACAAGTTTCTTCATTGGTAGGTGCCGCTTAC
GCCGTCGATGATAACATGGGTTCGTGTAGCCGCACACGTTCGACACCGTT
GTTCGCCGCAAGCAGCCGCTCAAAACATGATGTTTGCCGGCCAAGCTTGC
AACATACATTCCAAACAATTTGACGCGATGCAGACCAAACAGCTTTCGAA
TTGCCAACTTTCGTCAGCCCTCCTCGGTCTCGCGCTCGCTCTCCCCGTTG
ATCATCTTCTTCAAACCCAAACCTTGACCCTGAAACGCTCAGGTAGCCAC
CCTGGTGCAGGGTATTTACACTGACTTCGACGAGCTAGAGGATGCCGGTG
CAGAAGCTGCCGGGTAACACCAAGAACCGCACCCGCGCAATTGTACAGAC
GCACGGCGACAGCGCCCGTGTGTGGGTTCTGGGTTGTGTGTCATACATCT
GTTGTGGTGTGGCGCTTCGGTTGGTACCGATTACCGCGAGCGCAGTGTAG
CAGCTCGTAGGGGTGGATGAAGCTTCAACAGCTGCACCCGTCACTCCTTA
GTGGACTACCGTATGTTCCCTGTTCTTGGAAGGAATGCGAGATTTCGTTT
CGTGTCGATCGTGTTTCTATTCCTAGTGTACCGAGCCCTACACTGGATAT
CGAGCGCGGTCGGGTGTAACCCAGATCGACGATAAAAATATCGTAGCGCT
ACGGCCGCTCGGCACGAAGTCTTTTGTAACTTCCGCCACACGGTATGTTG
ACTGCGGCGGTGGTACAGCTTGGGTGTTTTGGGTGTGCGGTGGCTTTTTC
GCCGTGCTGCAAGCGCTTCTTCAAAGTTCTAGTATTGCCGGCATGGGCAT
GCCGATCTAGCGTAGCTCTTGCTATCCATCCTCATCCTGCTCCAACCACG
TACGGCATCTACGCGGGAGCACTGGCACCGCATCGGGGTAGTCTAGGGTT
TGAACGAGGAAAGTCGATTGTGAGAGGACCCGACTCAAGGGAGGGTTGCG
CCGTTGTGCGTCGAGTTTCTCAAAAGACCAAGGAGTAATTCGGTCCTCGT
GGCAAACACGTGGCAACAATATTGTTGTTCTTGGGGTGGGCGTAGACCGC
TGACGTTTAGGGGAATAAATAAAAACGCGACATCATCCACCTCAAGGCAA
AACACTTGATGTTTTACAG
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Coding sequence (CDS) from alignment at S-firma_F_contig104:51563..55581-

>mRNA_S-firma_F_contig104.581.1 ID=mRNA_S-firma_F_contig104.581.1|Name=mRNA_S-firma_F_contig104.581.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1512bp|location=Sequence derived from alignment at S-firma_F_contig104:51563..55581- (Sphaerotrichia firma ET2_F female)
ATGAAGATACACCGAAGAGGGCTAGCGCTGATGGGCGCGGGACTCTTGTC
TTCACCGTGCCTTGCTTTTGCGCCGGGTTCGTACCCGATTCATGGCGCAC
CAGCATTGAGGTCATCAACTACCTCCTGCGATCAGATGAAGATACACCGA
AGAGGGCTAGCGCTGATGGGCGCGGGACTCTTGTCTTCACCGTGCCTTGC
TTTTGCGCCGGGTTCGTACCCGATTCATGGCGCACCAGCATTGAGGTCAT
CAACTACCTCCTGCGATCAGAAATGGGCGCCGAACAGCCACAAGCACCGA
GAAACGTCACCCCAACGACGTTCTCGTGGCGCGCGGAGACGTTCGGGCGT
TTTGGTGGGGCTTGCCGCCGAGGCGCAGGAGCGAGGAGCGGAGGGGGGGC
GCGCGGCGAAGAGAGAACCCACGCAGCAAGAAAGGGAGGACGAGATCAAC
AAGCTGAAATGGGCGCCGAACAGCCACAAGCACCGAGAAACGTCACCCCA
ACGACGTTCTCGTGGCGCGCGGAGACGTTCGGGCGTTTTGGTGGGGCTTG
CCGCCGAGGCGCAGGAGCGAGGAGCGGAGGGGGGGCGCGCGGCGAAGAGA
GAACCCACGCAGCAAGAAAGGGAGGACGAGATCAACAAGCTGGTGTTTGT
GGCGGAGACCATGTCTTCATCCAAGATGATGACCATTGACTCCTTCGGGC
CGGAGCAATCTGCATCGGCAAGGAGAGGGGGTAAAAGCAGGGCAAACAAC
GCCGCGCCTTCGTACGCCGCACAGGAGCCAATGCTCCCACAGGTGTTTGT
GGCGGAGACCATGTCTTCATCCAAGATGATGACCATTGACTCCTTCGGGC
CGGAGCAATCTGCATCGGCAAGGAGAGGGGGTAAAAGCAGGGCAAACAAC
GCCGCGCCTTCGTACGCCGCACAGGAGCCAATGCTCCCACAGGCGATCGC
AAGGCAGAAGCGGCTCTTTGAGAAGAGAAAGTGGCGCCTCATCGGCGACA
ACGTCTTCCTCGGCCTCCTCGGCACCAGCGGCGCCTGGGTCGTCTCCTTC
AAGGCGGCCTGCAGCTACGGCCTCGGGGCGACGCTGGGCACTGCCTATCT
CGTCCTACTGAGCCGCTTCGTGGAGAGTCTCGGGAACGACGGCGAGGGCG
GGGGCGGCGGGGGCGGGAGGGGGGGGGGGGGGGGGGAGGGCCGGCGAGGC
TTGCGCTGGCGGGGCTGCTGGTGCTGAGCGATCGCAAGGCAGAAGCGGCT
CTTTGAGAAGAGAAAGTGGCGCCTCATCGGCGACAACGTCTTCCTCGGCC
TCCTCGGCACCAGCGGCGCCTGGGTCGTCTCCTTCAAGGCGGCCTGCAGC
TACGGCCTCGGGGCGACGCTGGGCACTGCCTATCTCGTCCTACTGAGCCG
CTTCGTGGAGAGTCTCGGGAACGACGGCGAGGGCGGGGGCGGCGGGGGCG
GGAGGGGGGGGGGGGGGGGGGAGGGCCGGCGAGGCTTGCGCTGGCGGGGC
TGCTGGTGCTGA
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