mRNA_S-firma_F_contig104.578.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig104.578.1
Unique NamemRNA_S-firma_F_contig104.578.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:46797..48052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size493
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.578.1prot_S-firma_F_contig104.578.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig104 47057..48052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.356651-UTR-S-firma_F_contig104:46796..470561622815573.356651-UTR-S-firma_F_contig104:46796..47056Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 46797..47056 +
1696949426.532512-UTR-S-firma_F_contig104:46796..470561696949426.532512-UTR-S-firma_F_contig104:46796..47056Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 46797..47056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.3675344-CDS-S-firma_F_contig104:47056..472601622815573.3675344-CDS-S-firma_F_contig104:47056..47260Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 47057..47260 +
1696949426.5429478-CDS-S-firma_F_contig104:47056..472601696949426.5429478-CDS-S-firma_F_contig104:47056..47260Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 47057..47260 +
1622815573.3795393-CDS-S-firma_F_contig104:48025..480521622815573.3795393-CDS-S-firma_F_contig104:48025..48052Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 48026..48052 +
1696949426.55302-CDS-S-firma_F_contig104:48025..480521696949426.55302-CDS-S-firma_F_contig104:48025..48052Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 48026..48052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig104.578.1

>prot_S-firma_F_contig104.578.1 ID=prot_S-firma_F_contig104.578.1|Name=mRNA_S-firma_F_contig104.578.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=77bp
MAPSVRDGAQWDGSCCALKLIKLAAGNFDAERVLESAQPSWIIAGSSPTA
SENNKPTNGVSSVDTNRSQWSRPWRES
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mRNA from alignment at S-firma_F_contig104:46797..48052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig104.578.1 ID=mRNA_S-firma_F_contig104.578.1|Name=mRNA_S-firma_F_contig104.578.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1256bp|location=Sequence derived from alignment at S-firma_F_contig104:46797..48052+ (Sphaerotrichia firma ET2_F female)
AGAAGAGTGTATGTAATGGCTGGAGTGGAGCGGACCGAGCGGAGCTGATG
AATCGGGAGACGGGTCGATGTTGCGCCGCGTATAATCTCGAGCCGTCTAT
TGGCTGATGAAACCGTCGAAATCCAAAAAAATCTCCATCTCGTCTCAATG
TCGGCATGTCCGCCCCAAAAATCAATACGTCGGAACATCCTGTTTTCCAG
CTCTAGAGAGCTGCTGCTTTCGCTAGTCGATGGTGCTGCTACTTGTATGA
TAGCATTCTTATGGCACCTTCAGTCAGAGATGGCGCGCAATGGGACGGCA
GCTGCTGCGCGTTGAAGCTCATCAAGCTGGCAGCAGGGAATTTCGACGCC
GAACGCGTGCTGGAAAGCGCCCAACCTTCCTGGATCATCGCTGGTTCTTC
GCCTACAGCCAGTGAAAACAACAAGCCTACCAACGGGGTGTCGTCGGTCG
ATACCAATCGTTCGGTGAGAGGGATGCCGTAGTGGAATGCGCCCGGGTAG
GCCATTAAACGTAATTTGCCTACCCTGTAATATTTTTGTCTACTAGTCTA
GACTATGCATCGTAGTCTAGTACAATTTAGAGGGGGGGGGGGAGTGCCCA
CGGCTGTTGCGCAGTAAACATGCACGCACGATAACAACATAACACCACAT
ACTACATCCAAGTCTTCCTATTAATGCAGTTTGTGTGCATCCAAGTCTTC
CTATCTACTACATGTAGACTAGTGCAGCAAGTTGCTGATGATGATGATTA
CGTACTAGTCTATGTAGCCGAGAGACCCCCTTATTGATAAAGTTGCCCTC
ACCTTTTTGTGAGGTCGACTTGAACGATCGAGGCCACATCATTGTATGGC
ATGTGTACATTCTATGGCATACGAAATCATTTAGCATGGATGCGGAGCTT
GGGCATTCCGCATCCATCAACTTACATAGATATAAGGACATCACATGCCC
CAACCTAATCTGTGACAGCGGTGAGCATGCACGCTCAGGTTGTCGTGGGC
AAGACTGGAGACTACCCTGCAGCTGAACTACCCTGCAGCTGATGAAAATT
CGCCTAGCGTTGAGGCATGTATTGCAGGGAAGAGCATAGCACACACATTG
ACGATGCTGTATAGTTGGCATATCTTATATTTCGCTGCTTGCTCTTGGGT
AAATAACGTGTCCAGTTCTTCTAATTCTCCAATGAGCACACATAATCTAT
CCACGGCGGTTGAACTTGACCCAAAACAGCAGTGGAGCCGTCCTTGGCGC
GAGAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig104:46797..48052+

>mRNA_S-firma_F_contig104.578.1 ID=mRNA_S-firma_F_contig104.578.1|Name=mRNA_S-firma_F_contig104.578.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=462bp|location=Sequence derived from alignment at S-firma_F_contig104:46797..48052+ (Sphaerotrichia firma ET2_F female)
ATGGCACCTTCAGTCAGAGATGGCGCGCAATGGGACGGCAGCTGCTGCGC
GTTGAAGCTCATCAAGCTGGCAGCAGGGAATTTCGACGCCGAACGCGTGC
TGGAAAGCGCCCAACCTTCCTGGATCATCGCTGGTTCTTCGCCTACAGCC
AGTGAAAACAACAAGCCTACCAACGGGGTGTCGTCGGTCGATACCAATCG
TTCGATGGCACCTTCAGTCAGAGATGGCGCGCAATGGGACGGCAGCTGCT
GCGCGTTGAAGCTCATCAAGCTGGCAGCAGGGAATTTCGACGCCGAACGC
GTGCTGGAAAGCGCCCAACCTTCCTGGATCATCGCTGGTTCTTCGCCTAC
AGCCAGTGAAAACAACAAGCCTACCAACGGGGTGTCGTCGGTCGATACCA
ATCGTTCGCAGTGGAGCCGTCCTTGGCGCGAGAGCCAGTGGAGCCGTCCT
TGGCGCGAGAGC
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