mRNA_S-firma_F_contig104.575.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig104.575.1
Unique NamemRNA_S-firma_F_contig104.575.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:33365..33973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.5457683-CDS-S-firma_F_contig104:33364..339011622815572.5457683-CDS-S-firma_F_contig104:33364..33901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 33365..33901 +
1696949425.5787814-CDS-S-firma_F_contig104:33364..339011696949425.5787814-CDS-S-firma_F_contig104:33364..33901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 33365..33901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.5613992-UTR-S-firma_F_contig104:33901..339731622815572.5613992-UTR-S-firma_F_contig104:33901..33973Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 33902..33973 +
1696949425.6268322-UTR-S-firma_F_contig104:33901..339731696949425.6268322-UTR-S-firma_F_contig104:33901..33973Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 33902..33973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.575.1prot_S-firma_F_contig104.575.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig104 33365..33901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig104.575.1

>prot_S-firma_F_contig104.575.1 ID=prot_S-firma_F_contig104.575.1|Name=mRNA_S-firma_F_contig104.575.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=179bp
MRSLPKLPRALESVDGDQRKLAHGRAPVEEPRRREVRIQSALRRSRENVK
TRRRCCDYSACTNCHRNGYLFELLLRTVGTKVDARRQATHLKATPAINLE
VLCILYLKIYAGPGEHPVFLLHRKLFKCNRSIEVEKFFRAVTAALYPFVA
AEESIHLTRYPHPLCGYTQTSFSGKIVR*
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mRNA from alignment at S-firma_F_contig104:33365..33973+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig104.575.1 ID=mRNA_S-firma_F_contig104.575.1|Name=mRNA_S-firma_F_contig104.575.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=609bp|location=Sequence derived from alignment at S-firma_F_contig104:33365..33973+ (Sphaerotrichia firma ET2_F female)
ATGCGCAGCTTACCAAAATTGCCCCGTGCTCTGGAGTCTGTGGACGGCGA
CCAGCGTAAGCTTGCTCACGGCCGTGCTCCTGTGGAAGAACCACGTCGTA
GAGAGGTAAGGATTCAGTCCGCTCTTCGTCGCAGCAGGGAAAACGTGAAG
ACACGAAGAAGGTGCTGCGACTACTCTGCCTGTACAAATTGTCATCGGAA
CGGTTATTTATTCGAATTGCTGCTGCGAACCGTAGGTACGAAGGTGGACG
CCCGACGACAAGCTACGCATCTCAAAGCAACCCCAGCTATAAATCTCGAA
GTGCTTTGTATACTGTACCTCAAAATCTACGCCGGACCTGGCGAGCATCC
TGTTTTCCTGCTTCATCGCAAGCTGTTCAAATGCAATCGAAGTATCGAAG
TCGAAAAGTTCTTCCGCGCGGTCACGGCGGCTTTGTATCCGTTTGTGGCA
GCGGAGGAATCCATACATCTCACCCGCTACCCTCATCCCTTGTGTGGGTA
CACACAAACCTCCTTTTCCGGAAAAATAGTACGCTGACACCGCTTCCGGG
AGGGAGAAAAGTGTCAAGCTTAAAAACCGACGTGGTGACCTAGAAGTCCA
TCCGTGCTC
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Coding sequence (CDS) from alignment at S-firma_F_contig104:33365..33973+

>mRNA_S-firma_F_contig104.575.1 ID=mRNA_S-firma_F_contig104.575.1|Name=mRNA_S-firma_F_contig104.575.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1074bp|location=Sequence derived from alignment at S-firma_F_contig104:33365..33973+ (Sphaerotrichia firma ET2_F female)
ATGCGCAGCTTACCAAAATTGCCCCGTGCTCTGGAGTCTGTGGACGGCGA
CCAGCGTAAGCTTGCTCACGGCCGTGCTCCTGTGGAAGAACCACGTCGTA
GAGAGGTAAGGATTCAGTCCGCTCTTCGTCGCAGCAGGGAAAACGTGAAG
ACACGAAGAAGGTGCTGCGACTACTCTGCCTGTACAAATTGTCATCGGAA
CGGTTATTTATTCGAATTGCTGCTGCGAACCGTAGGTACGAAGGTGGACG
CCCGACGACAAGCTACGCATCTCAAAGCAACCCCAGCTATAAATCTCGAA
GTGCTTTGTATACTGTACCTCAAAATCTACGCCGGACCTGGCGAGCATCC
TGTTTTCCTGCTTCATCGCAAGCTGTTCAAATGCAATCGAAGTATCGAAG
TCGAAAAGTTCTTCCGCGCGGTCACGGCGGCTTTGTATCCGTTTGTGGCA
GCGGAGGAATCCATACATCTCACCCGCTACCCTCATCCCTTGTGTGGGTA
CACACAAACCTCCTTTTCCGGAAAAATAGTACGCTGAATGCGCAGCTTAC
CAAAATTGCCCCGTGCTCTGGAGTCTGTGGACGGCGACCAGCGTAAGCTT
GCTCACGGCCGTGCTCCTGTGGAAGAACCACGTCGTAGAGAGGTAAGGAT
TCAGTCCGCTCTTCGTCGCAGCAGGGAAAACGTGAAGACACGAAGAAGGT
GCTGCGACTACTCTGCCTGTACAAATTGTCATCGGAACGGTTATTTATTC
GAATTGCTGCTGCGAACCGTAGGTACGAAGGTGGACGCCCGACGACAAGC
TACGCATCTCAAAGCAACCCCAGCTATAAATCTCGAAGTGCTTTGTATAC
TGTACCTCAAAATCTACGCCGGACCTGGCGAGCATCCTGTTTTCCTGCTT
CATCGCAAGCTGTTCAAATGCAATCGAAGTATCGAAGTCGAAAAGTTCTT
CCGCGCGGTCACGGCGGCTTTGTATCCGTTTGTGGCAGCGGAGGAATCCA
TACATCTCACCCGCTACCCTCATCCCTTGTGTGGGTACACACAAACCTCC
TTTTCCGGAAAAATAGTACGCTGA
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