mRNA_S-firma_F_contig104.573.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI) HSP 1 Score: 269 bits (688), Expect = 1.290e-82 Identity = 141/197 (71.57%), Postives = 158/197 (80.20%), Query Frame = 2
Query: 17 AAFLPPFAGGAMDRLTTATASARRGCR-QRLAAYNSSPYDSDGDTT------------TSMSFRSPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAGCTLKE 568
AAF+ P+A MD L + S+ G R QRLAAY++SP S G T T+M F+SP+DVLKQGIAK GAGPYDKDAV+K+V+ YTSG KVVVFSWTRCPFCKKAK L+EDLL DPAD+EFVELDERQDGNAIRYELSQ TGRTSVPQIWIGGEFVGGCNDGPGVFTLM+KGELVPMLE+AGC LK+
Sbjct: 5 AAFVHPYAARTMDGLASPHGSSSSGYRAQRLAAYSNSPPCSKGSVTARHRSVRRTTRTTTMGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRCPFCKKAKGLIEDLLADPADYEFVELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCNDGPGVFTLMDKGELVPMLESAGCALKK 201
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A835YLP8_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP8_9STRA) HSP 1 Score: 149 bits (376), Expect = 6.920e-38 Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 2
Query: 71 TASARRGCRQRLAAYNSSPYDSDGDTTTSMSFRSPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDERQD-GNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAGCTLK 565
TA+ R LAA +DS + + SP + K+ IAKAG G Y++ V + Y + D KV+VFSWT CPFCKKAK + +L++ P+ ++ VELD+ + G A R+ELS+ITGRTSVPQIWI GEF+GGCNDGPG+ TL ++G+LVPML+ AGC +K
Sbjct: 27 TAAVLRASNNDLAAAE---HDSMINKISVAVTNSPFNQFKKFIAKAGTGEYNEAEVAGKINSYIA-DNKVMVFSWTNCPFCKKAKAQLAELME-PSQYKVVELDQDAELGKAYRFELSKITGRTSVPQIWIKGEFIGGCNDGPGLLTLQKQGKLVPMLKKAGCKVK 187
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A8J9RIT3_9CHLO (Probable Glutaredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIT3_9CHLO) HSP 1 Score: 133 bits (335), Expect = 3.300e-32 Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 2
Query: 170 SPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
SP + +K+ IA A AG YD+ A+ V+ Y D VVVFSWTRCPFC KAKR ++ L A + VELD DGNAIR EL++ T RTS+P +WI GE +GGCNDGPG+ TL GELVPML+ AG
Sbjct: 67 SPANAVKKAIAAAQAGQYDEAAIGGKVDAYIK-DNPVVVFSWTRCPFCIKAKRELDSL---NAKYLAVELDTMADGNAIRSELAKRTNRTSMPNVWINGEGIGGCNDGPGLMTLQRNGELVPMLKRAG 190
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A383W3I8_TETOB (Glutaredoxin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3I8_TETOB) HSP 1 Score: 130 bits (327), Expect = 3.510e-31 Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 2
Query: 170 SPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
SP++ K+ +AKA AG YD+ AV +E D KV+VFSW+ CPFCK AK L+ D+ ADF +ELD Q+G IR EL+ +T RTSVP IWI G+ VGGCNDGPGV TL ++GELVPML+AAG
Sbjct: 60 SPINEGKKALAKAQAGDYDEKAVRGKIEGLIK-DNKVMVFSWSGCPFCKNAKALLSDV---GADFTALELDTLGQEGKQIRAELAAMTERTSVPNIWIAGKNVGGCNDGPGVMTLHKQGELVPMLKAAG 184
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A2P6TGA2_CHLSO (Glyoxalase domain-containing 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGA2_CHLSO) HSP 1 Score: 128 bits (321), Expect = 1.530e-30 Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 2
Query: 176 LDVLKQG---IAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
LD QG A A AG YD+ A +E Y + D VVVFSW+ CPFCK+AK +++ A + +ELD+ DG A+R EL++ TGR+SVP IWI G+ VGGCNDGPGV TL +KGELVPML+AAG
Sbjct: 47 LDFFNQGKVQAAVAAAGQYDEAATKAAIEKYIA-DNPVVVFSWSGCPFCKRAKAVLDAT---GAKYTALELDQMADGKALRAELAKKTGRSSVPNIWIAGQNVGGCNDGPGVATLQDKGELVPMLKAAG 171
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A7S2V0C9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C9_9STRA) HSP 1 Score: 123 bits (308), Expect = 6.110e-29 Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 2
Query: 152 TSMSFRSPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKR-LVEDLLDDPADFEFVELDERQD-GNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
+S+S P+ KQ IA A AG YDK + + D + VV+FSWT CPFCKKAK+ L+ED+ A + VELDE GNAIR EL + TGRTSVP IW+G E+VGGCNDGPGVF L +G+L P+L ++G
Sbjct: 23 SSISQVGPVAFFKQSIADAVAGDYDKVEINNEI-DKAIENNSVVIFSWTTCPFCKKAKQFLIEDI---GATVKVVELDEDPKIGNAIRAELGKRTGRTSVPSIWVGKEYVGGCNDGPGVFPLEAQGKLRPLLNSSG 154
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A061R5D6_9CHLO (Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5D6_9CHLO) HSP 1 Score: 124 bits (311), Expect = 1.150e-28 Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 2
Query: 140 GDTTTSMSFRSPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAGCTLK 565
G+T T+ SPL+ K +AK AG YDK AV VE+ S + KVVVFS++ CPFC KAK L++D+ A++E VEL++ ++G AIR EL+++TGRTS+P IWI GE +GGCNDGPG+ +L G L+P LE AG K
Sbjct: 80 GNTVTA----SPLNKGKIELAKLQAGDYDKTAVRAKVENXISSE-KVVVFSFSTCPFCVKAKELLQDV---GAEYEAVELNDMGKEGYAIRAELAELTGRTSMPNIWIAGEGIGGCNDGPGIMSLHRXGLLLPKLEKAGALSK 214
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A2V0PHJ4_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHJ4_9CHLO) HSP 1 Score: 118 bits (296), Expect = 5.080e-27 Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 2
Query: 170 SPLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
SPL+ K+ +AK AG YD+ AV +E +G T VV+FS++ CPFC +AK L+ +L A +E +EL+E +DG +R EL+Q+T RTS+P IWI G FVGGCNDGPG+ L ++G+LVP+L AG
Sbjct: 57 SPLNKGKKALAKLQAGDYDEAAVRAKLEGILTG-TPVVMFSFSTCPFCNRAKALLNEL---GASYEAIELNEMGKDGMQLRAELAQMTDRTSMPSIWIQGSFVGGCNDGPGIMPLHKQGKLVPLLREAG 181
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A7J7QQ62_9CHLO (Thioredoxin-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQ62_9CHLO) HSP 1 Score: 114 bits (284), Expect = 1.790e-26 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 2
Query: 269 DTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDE-RQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
D KVVVFSW+ CPFCK AK L+ D+ ADF +ELD Q+G IR EL+ +T RTSVP IWI G+ VGGCNDGPG+ TL ++GELVPML+AAG
Sbjct: 4 DNKVVVFSWSGCPFCKNAKALLADV---GADFTALELDTIGQEGKQIRAELAALTERTSVPNIWIAGKNVGGCNDGPGIMTLHKQGELVPMLKAAG 96
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Match: A0A7S1S2G3_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S2G3_ALECA) HSP 1 Score: 117 bits (292), Expect = 3.020e-26 Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 2
Query: 173 PLDVLKQGIAKAGAGPYDKDAVLKLVEDYTSGDTKVVVFSWTRCPFCKKAKRLVEDLLDDPADFEFVELDERQD-GNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPGVFTLMEKGELVPMLEAAG 553
PL+ K AK+ AG YD+ A +E Y S D KVVVFS+ +CPFC KAKR ++D+ AD+ V+LD+ D G +R EL++ T RTS+P I++ G+ +GGCNDGPG+ TL ++G+LVPMLEAAG
Sbjct: 78 PLNDAKIWFAKSQAGEYDEAATSAKLEKYIS-DNKVVVFSYAKCPFCIKAKRELDDM---GADYLPVDLDQMGDEGMQLRAELAKKTSRTSMPNIFVAGKGIGGCNDGPGMMTLKKEGKLVPMLEAAG 201 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig104.573.1 >prot_S-firma_F_contig104.573.1 ID=prot_S-firma_F_contig104.573.1|Name=mRNA_S-firma_F_contig104.573.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=191bp MVCRAAAFLPPFAGGAMDRLTTATASARRGCRQRLAAYNSSPYDSDGDTTback to top mRNA from alignment at S-firma_F_contig104:22318..26590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig104.573.1 ID=mRNA_S-firma_F_contig104.573.1|Name=mRNA_S-firma_F_contig104.573.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4273bp|location=Sequence derived from alignment at S-firma_F_contig104:22318..26590+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig104:22318..26590+ >mRNA_S-firma_F_contig104.573.1 ID=mRNA_S-firma_F_contig104.573.1|Name=mRNA_S-firma_F_contig104.573.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1146bp|location=Sequence derived from alignment at S-firma_F_contig104:22318..26590+ (Sphaerotrichia firma ET2_F female)back to top |