|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 873 |
| Cds size | 768 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815572.0624266-CDS-S-firma_F_contig10394:2872..3210 | 1622815572.0624266-CDS-S-firma_F_contig10394:2872..3210 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 2873..3210 - |
| 1696949425.2231536-CDS-S-firma_F_contig10394:2872..3210 | 1696949425.2231536-CDS-S-firma_F_contig10394:2872..3210 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 2873..3210 - |
| 1622815572.0755339-CDS-S-firma_F_contig10394:3587..3790 | 1622815572.0755339-CDS-S-firma_F_contig10394:3587..3790 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 3588..3790 - |
| 1696949425.2415912-CDS-S-firma_F_contig10394:3587..3790 | 1696949425.2415912-CDS-S-firma_F_contig10394:3587..3790 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 3588..3790 - |
| 1622815572.0858655-CDS-S-firma_F_contig10394:4689..4916 | 1622815572.0858655-CDS-S-firma_F_contig10394:4689..4916 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 4690..4916 - |
| 1696949425.2526786-CDS-S-firma_F_contig10394:4689..4916 | 1696949425.2526786-CDS-S-firma_F_contig10394:4689..4916 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10394 4690..4916 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815572.0953007-UTR-S-firma_F_contig10394:4916..5019 | 1622815572.0953007-UTR-S-firma_F_contig10394:4916..5019 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10394 4917..5019 - |
| 1696949425.3003292-UTR-S-firma_F_contig10394:4916..5019 | 1696949425.3003292-UTR-S-firma_F_contig10394:4916..5019 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10394 4917..5019 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10394.566.1 >prot_S-firma_F_contig10394.566.1 ID=prot_S-firma_F_contig10394.566.1|Name=mRNA_S-firma_F_contig10394.566.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=256bp
MCLWRSGDECMRLELDKVIDAHPGRARRACGKTPITTNTGAGIVPQQEDQ
EQLQGASSVGAPRRVVEGATPTRNQGWCTALANIAAEVPGPERVTSTTNL
TSRVSIDRTLLIDFLETTATETGPRCREGNKKEGDMAEAREAAGRGQCVK
ALTIAIDTTVDTGGRWYVPTDPLELVCLDLCVAYRSCWNIRPREVVVTTD
TPRRLWLHCKSSGTLRVPYLPVRAVSVEKWPRGVLAGLSEGQRRAADKKT
GSIVNW back to topmRNA from alignment at S-firma_F_contig10394:2873..5019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10394.566.1 ID=mRNA_S-firma_F_contig10394.566.1|Name=mRNA_S-firma_F_contig10394.566.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2147bp|location=Sequence derived from alignment at S-firma_F_contig10394:2873..5019- (Sphaerotrichia firma ET2_F female)
CGGGTATTCTGCGTGGCTGCTACTTGCTACATAGTCTAGCTGCTACGCTT
ACCTCTGGTCTCCTCCCTGCCTTTCCTGGGAAAACCATCAACAGCAGCAG
ACCATGTGTCTTTGGCGCTCGGGTGACGAATGCATGAGGTTGGAGTTGGA
TAAGGTCATCGACGCCCATCCTGGGAGAGCAAGACGAGCGTGCGGGAAAA
CACCCATTACAACCAACACCGGAGCGGGCATCGTCCCACAGCAGGAGGAC
CAGGAGCAGCTTCAGGGTGCGTCTTCGGTGGGAGCTCCAAGGAGAGTAGT
GGAGGGTGCGACTCCAACGAGAAACCAGGGGTGGGTTGATGGGGCTACAG
AATACATTCCCTTCTGGCGCGTGTCCTACTGCTGTAGTGAAAGGTGCATA
GTAGGTCAAACATTCAAGAAGAAAACACGCAGACGTTACACCTACATACG
GCACACTACAAACACCATACAGATCGCCATCTCGACATCTTTCGGGTGCT
TGCCTTCCGCAGATAGCTTCAAATTGCACTTCGGTACTCCGTAGAGCAGG
TTGGATATCGCCAAACGCTCCACCGGAGGTTTTTTCCGGAAAGCGCCAGA
CTTTCAGAGCAACGGTTGTTGGAGGCAACGACCAAGCCTCCTCGCCCTAC
GCACACACAACGCGAGACGAGGTCTGAGTCAAAGGCGGTGTACGACAAAG
CCAAATCTCGGCAAGGCAGACCTACGGGCAAGACATACATGGAACGTGAT
ACAACTTACGGCTGACGAATGTAGAAAATTTATTAAAAACTGGCTTGGCG
AGATGTCGGACAACCCAGTCCTGACAAAAGTGGTCTAGGTAAAGCGGTTA
CAATACGAAACACCTCGATGTCATTGTAATTGTCGAACAGAGCGTCATCC
GGTCTGATCTGATCTTCAGCAGCTATGAGGTCACCCAGAGGCACGCCCTT
CCTGAACGTCATCCTACTGAGACGTTCGACTGAGAACCCACGGCCACAGT
CAACTAACAGCTAGCAGTGTTTCTCTTCGACAGTGCGGCGAGCCTGTGTC
CTTTTTGCGGGTGCTCGGTTCCTCTTGTTTTTGATCGTGTATGAGAGAGA
GTCAATGGTTGCACCCAGAACAGCATAATAGGCCTAGACAATAATAGGTC
ATTATTTTGTGCATTGTTCTTCTTTCCCAACGATGCCACTTTCCCCACCA
CCTTTCTCCTGACCCGGACACCTATGCAGCTGGTGTACGGCATTGGCGAA
TATAGCAGCAGAAGTACCAGGACCAGAGAGGGTCACATCGACGACGAACT
TGACCTCTAGAGTCTCTATCGACCGTACGCTGCTTATTGATTTTCTGGAG
ACGACTGCAACCGAGACGGGTCCGCGTTGTCGCGAAGGAAATAAGAAAGA
AGGAGATATGGCGGAAGCACGAGAAGCAGCAGGTTCGTGTCCGTGTCGAA
TGCGGACCGGTGTTCGGAAGTTCCCCAAGTTCATTTCCTTTCCGTCTCCG
CTCAGTGCATTGGGAAGTTTTCGTTGTGGATGATCGAGCTTATAGAAGGC
GCCTTCGTTCAGCTGTCGCGGTCTTGTGTGCCGACCCTGTGTAGGTTGTG
CCAACATTTGATATACATGGCAGACCCGTGAGTTAAATGACATCCCAATC
GGTGGTCGAGTCGGAGCTTGTCGTAAGAAATAACCCTAAGAAGGCCGGTC
ACGTTTTCTTTTCTTCATCTACTCTCCATCAGCGCGGCCTCTCGCGTTAG
ATCATAACATCTCGTGGTCCACACTCCGCCGTGTTTTCATCTGTCGTGAT
TTTCCGCAGGACGAGGTCAATGCGTGAAGGCCTTGACCATTGCCATCGAC
ACTACCGTTGACACGGGAGGCCGGTGGTATGTCCCGACGGACCCTCTGGA
ACTGGTATGTCTGGACCTCTGCGTGGCTTATCGGTCTTGTTGGAACATTC
GACCCAGGGAGGTCGTGGTCACCACCGATACACCCCGCCGCTTATGGCTG
CACTGCAAGTCGTCTGGGACTCTGAGGGTGCCGTACTTGCCAGTGCGCGC
TGTATCGGTGGAGAAGTGGCCAAGAGGCGTGCTGGCAGGCCTTTCCGAGG
GACAGCGTCGAGCCGCCGACAAGAAGACAGGAAGTATTGTGAACTGG back to topCoding sequence (CDS) from alignment at S-firma_F_contig10394:2873..5019- >mRNA_S-firma_F_contig10394.566.1 ID=mRNA_S-firma_F_contig10394.566.1|Name=mRNA_S-firma_F_contig10394.566.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1536bp|location=Sequence derived from alignment at S-firma_F_contig10394:2873..5019- (Sphaerotrichia firma ET2_F female)
ATGTGTCTTTGGCGCTCGGGTGACGAATGCATGAGGTTGGAGTTGGATAA
GGTCATCGACGCCCATCCTGGGAGAGCAAGACGAGCGTGCGGGAAAACAC
CCATTACAACCAACACCGGAGCGGGCATCGTCCCACAGCAGGAGGACCAG
GAGCAGCTTCAGGGTGCGTCTTCGGTGGGAGCTCCAAGGAGAGTAGTGGA
GGGTGCGACTCCAACGAGAAACCAGGGATGTGTCTTTGGCGCTCGGGTGA
CGAATGCATGAGGTTGGAGTTGGATAAGGTCATCGACGCCCATCCTGGGA
GAGCAAGACGAGCGTGCGGGAAAACACCCATTACAACCAACACCGGAGCG
GGCATCGTCCCACAGCAGGAGGACCAGGAGCAGCTTCAGGGTGCGTCTTC
GGTGGGAGCTCCAAGGAGAGTAGTGGAGGGTGCGACTCCAACGAGAAACC
AGGGCTGGTGTACGGCATTGGCGAATATAGCAGCAGAAGTACCAGGACCA
GAGAGGGTCACATCGACGACGAACTTGACCTCTAGAGTCTCTATCGACCG
TACGCTGCTTATTGATTTTCTGGAGACGACTGCAACCGAGACGGGTCCGC
GTTGTCGCGAAGGAAATAAGAAAGAAGGAGATATGGCGGAAGCACGAGAA
GCAGCAGCTGGTGTACGGCATTGGCGAATATAGCAGCAGAAGTACCAGGA
CCAGAGAGGGTCACATCGACGACGAACTTGACCTCTAGAGTCTCTATCGA
CCGTACGCTGCTTATTGATTTTCTGGAGACGACTGCAACCGAGACGGGTC
CGCGTTGTCGCGAAGGAAATAAGAAAGAAGGAGATATGGCGGAAGCACGA
GAAGCAGCAGGACGAGGTCAATGCGTGAAGGCCTTGACCATTGCCATCGA
CACTACCGTTGACACGGGAGGCCGGTGGTATGTCCCGACGGACCCTCTGG
AACTGGTATGTCTGGACCTCTGCGTGGCTTATCGGTCTTGTTGGAACATT
CGACCCAGGGAGGTCGTGGTCACCACCGATACACCCCGCCGCTTATGGCT
GCACTGCAAGTCGTCTGGGACTCTGAGGGTGCCGTACTTGCCAGTGCGCG
CTGTATCGGTGGAGAAGTGGCCAAGAGGCGTGCTGGCAGGCCTTTCCGAG
GGACAGCGTCGAGCCGCCGACAAGAAGACAGGAAGTATTGTGAACTGGGA
CGAGGTCAATGCGTGAAGGCCTTGACCATTGCCATCGACACTACCGTTGA
CACGGGAGGCCGGTGGTATGTCCCGACGGACCCTCTGGAACTGGTATGTC
TGGACCTCTGCGTGGCTTATCGGTCTTGTTGGAACATTCGACCCAGGGAG
GTCGTGGTCACCACCGATACACCCCGCCGCTTATGGCTGCACTGCAAGTC
GTCTGGGACTCTGAGGGTGCCGTACTTGCCAGTGCGCGCTGTATCGGTGG
AGAAGTGGCCAAGAGGCGTGCTGGCAGGCCTTTCCGAGGGACAGCGTCGA
GCCGCCGACAAGAAGACAGGAAGTATTGTGAACTGG back to top
|