mRNA_S-firma_F_contig10378.539.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10378.539.1
Unique NamemRNA_S-firma_F_contig10378.539.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001E53ED22 (homocysteine S-methyltransferase n=1 Tax=Modestobacter roseus TaxID=1181884 RepID=UPI001E53ED22)

HSP 1 Score: 159 bits (402), Expect = 3.090e-43
Identity = 141/322 (43.79%), Postives = 167/322 (51.86%), Query Frame = 1
Query:    1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDG--GEDALAVSVALA---VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAE-DFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVG----SDVVAACAAAVR 924
            VLDGGL+T L A  H +   LWS  A L  +  AAV AAHA F  AGA V+TT++YQ T  G   AG+D       +A SVALA   + AA  +  VA S+GPYGAYLAD SE TG Y    +V  L AFHRPR+  L  A +G+       V A ET+P   EV AL   L   D P   AWLS+T   GP DG  R R GE +A+    A  VA  Q+ AVG NC  P  VA A+ A A A            VAYPNSG  +D A + W  +     +     AW+ A       VGGCC V       V AA AAAVR
Sbjct:    1 VLDGGLSTELEARGHDVSSALWS--ARLLRDDPAAVVAAHAAFATAGAQVLTTASYQATLPGFAAAGIDADRARSLIAGSVALAREGLAAAARTGWVAGSVGPYGAYLADGSEYTGGYLDDVSVAQLRAFHRPRLALL--AEAGAD------VLALETLPGAAEVEALLTELGSLDVP---AWLSLTSTTGP-DGVPRTRRGEPLAEVAAMARGVA--QVVAVGVNCTDPAAVAAAMAAAAEAS-------GTSAVAYPNSGESWDAAARRWTGQPGVGDVS----AWLDAGARL---VGGCCRVRPADVEQVTAAVAAAVR 292          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A562INT4_9ACTN (Homocysteine S-methyltransferase n=2 Tax=Modestobacter roseus TaxID=1181884 RepID=A0A562INT4_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 2.700e-40
Identity = 137/319 (42.95%), Postives = 167/319 (52.35%), Query Frame = 1
Query:    1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVAGV----DGGEDALAVSVALA---VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVAL-CRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRA 927
            VLDGGL+T L A  H +   LWS  A L  +  AAV AAHA F AAGA V+TT++YQ T  G A      D   D +A SV LA   + AA  +  VA S+GPYGA+LAD SE TG Y    +V  L AFHRPR+  L  A +G+       V A ET+P   EV AL   L + D P   AWLS+T   GP DG  R R GE +A+  VAA     +Q+ AVG NC  P  V  A+  +A+A         +   AYPNSG  +D A + W  +     +     AW AA       VGGCC V    VAA AAA  A
Sbjct:   14 VLDGGLSTELEARGHDVSSALWS--ARLLRDDPAAVVAAHAAFAAAGAQVLTTASYQATLPGFAAAGIDTDRARDLIAGSVRLAREGLAAAGRTGWVAGSVGPYGAFLADGSEYTGGYLDDVSVTELRAFHRPRLALL--AEAGAD------VLAVETLPGAAEVEALLAELESLDVP---AWLSLTSTTGP-DGVPRTRRGEPLAE--VAALVRGLSQVVAVGVNCTDPAGVPPAVAVMATAS-------GKPAAAYPNSGERWDAAARRWTGQPGVGDVT----AWTAAGARL---VGGCCRVRPADVAAIAAATSA 302          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A1I1TIL8_9ACTN (Homocysteine S-methyltransferase n=2 Tax=Klenkia TaxID=2183612 RepID=A0A1I1TIL8_9ACTN)

HSP 1 Score: 149 bits (375), Expect = 2.550e-39
Identity = 139/313 (44.41%), Postives = 164/313 (52.40%), Query Frame = 1
Query:    1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDGGEDALAVSVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERA-AWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRL-LPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
            VLDGGL+T L +  H +   LWS  A L  +   AV  AHA F AAGA V TT++YQ T  G   AG       +A SV LA   A PSS VA S+GPYGAYLAD SE TG+Y S  TV  L  FHRPR+  L  A +G        V A ET+P   EV AL   LAE  P    AW+S+TV DGP   G R R GE +A  V    A+ A  + AVG NC  P  VA A+ A A+             V YPNSG  +D A + W    T Y+     +P W+AA       VGGCC V  D VA  AAA+
Sbjct:   13 VLDGGLSTELESRGHDVTSALWS--ARLLRDDPDAVRDAHAAFEAAGAQVATTASYQATAPGFAAAGYANAPGLIARSVQLAREGA-PSSWVAGSVGPYGAYLADGSEYTGAYLSDVTVAQLREFHRPRLQVL--AEAGVD------VLACETLPGAAEVEAL---LAELEPLGVPAWISLTVVDGP--DGVRTRRGEPLASVV----AMCAGSVLAVGVNCTDPAAVAPAVAAGAT-------------VVYPNSGEGWDAAGRRW----TGYTGAGWDVPGWVAAGARL---VGGCCRVRPDDVARVAAAI 285          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A367A0B7_9ACTN (Homocysteine S-methyltransferase n=1 Tax=Geodermatophilus sp. TF02-6 TaxID=2250575 RepID=A0A367A0B7_9ACTN)

HSP 1 Score: 149 bits (375), Expect = 3.710e-39
Identity = 137/314 (43.63%), Postives = 163/314 (51.91%), Query Frame = 1
Query:    1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDGGEDA--LAVSVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMT-VRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
            +LDGGLAT L    H L   LWS  A L  +   AV AAHA F AAGA V+TT++YQ + +G   AGV   E    +A SV LA   A P + VA S+GPYGA LAD SE TG Y +  +V  L AFHRPRM  L AA +         V A ETVP  VE  AL  +   D      WLS+T V D   DG  R R GER A+AV A  A     + AVG NC +P  V  +L   ASA   +        VAYPNSG  +D A + W     P   P  +P W+AA       VGGCC V    +A  AAA+
Sbjct:   16 LLDGGLATELEVQGHDLSSALWS--ARLLRDPPEAVVAAHAAFAAAGAQVVTTASYQASVEGFAAAGVGAAEARRLIASSVQLARRGA-PGAWVAGSVGPYGAVLADGSEYTGDYCARMSVAELRAFHRPRMQLLAAAGAD--------VLACETVPAAVEAEAL--VAEADALGVPVWLSLTTVVDD--DGVVRTRRGER-AEAVFAL-AAGVDAVVAVGVNCTAPSAVGPSLAVAASADTPL--------VAYPNSGEGWDAAARRWT--GVPGVAPDAVPPWVAAGARL---VGGCCRVRPAHIAGIAAAL 299          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001554E670 (homocysteine S-methyltransferase n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001554E670)

HSP 1 Score: 149 bits (375), Expect = 4.730e-39
Identity = 132/311 (42.44%), Postives = 165/311 (53.05%), Query Frame = 1
Query:    1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGE--DALAVSVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVA-LCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVA 903
            VLDGGLAT L    H L   LWS  A L  +  AA+  AH +F AAGA+V TT++YQV+ +G    GVD GE    L  SVALA  A   A P   VA S+GPYGA LAD SE  G Y     V  L AFHRPR+  L A+  G+G      V A ETVPC+ EV A L  L     P   AWLS++  +G      R R+GE + +A   A  VA  ++ AVG NC +P        A A A +   G + +  V YPNSG  +D   +AW  R+  +  P  + AW+AA       VGGCC VG + +A
Sbjct:   24 VLDGGLATLLERHGHDLSSHLWS--ARLLRDDPAAIEDAHREFFAAGAEVATTASYQVSFEGFGTEGVDRGEVERLLRRSVALAAAARDEAAPGGWVAASVGPYGAVLADGSEYRGDYGLD--VAALRAFHRPRLDVL-ASTVGAGAD----VLAVETVPCLAEVEAVLAELDGSGVP---AWLSLSASEG------RTRAGEPLEEAFAMAADVA--EVLAVGVNCTTP--------ADAGAAVEAAGAH-KPAVVYPNSGQSWDAEARAWTGRSAFH--PEDVSAWVAAGARL---VGGCCRVGPEDIA 300          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI0013587E97 (homocysteine S-methyltransferase n=1 Tax=Aquitalea denitrificans TaxID=519081 RepID=UPI0013587E97)

HSP 1 Score: 149 bits (375), Expect = 5.730e-39
Identity = 131/330 (39.70%), Postives = 166/330 (50.30%), Query Frame = 1
Query:    1 VLDGGLATALPAH--HLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA----LAVSVALA----------VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGAL---LAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRA 927
            +LDG LATAL A    L   LWS   LL  E   A+A  H D++ AGAD+ITT++YQ + +G A  G+D  + A    L+V +AL           VG   P  LVA S+GPYGA LAD SE  G Y  + T   LM FHRPR+  L  A SG+       + A ET+PC  E +AL RLL E+FP   AW+S + RD       R+  GER+AD +   + VA  Q+ A+G NC  P  V G L    AV   PL+          AYPNSG  +DG  K W   A+          W  A       +GGCC  G   +AA  A + A
Sbjct:   20 LLDGALATALEARGFDLADPLWSARVLL--EAPQAIAQLHLDYLQAGADIITTASYQASFEGFARRGLDRQQAAGLMQLSVELALQARQHFLANQPVGQQAP--LVAASVGPYGAMLADGSEYRGDYGLSVTQ--LMDFHRPRLAVL--AASGAD------LLACETIPCPEEALALARLLQEEFPATPAWISFSCRDAV-----RVWQGERLADCITMLDGVA--QVVALGVNCTDPRWVEGLLQQAAAVTDKPLL----------AYPNSGEQWDGQHKCWHGTASTADFSAQARRWRQAGARL---IGGCCRTGPAHIAALRACLDA 315          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001749A229 (homocysteine S-methyltransferase n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI001749A229)

HSP 1 Score: 146 bits (369), Expect = 2.840e-38
Identity = 135/319 (42.32%), Postives = 169/319 (52.98%), Query Frame = 1
Query:    1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVAGVDG-GEDALAV----SVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVA-LCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGAL-LAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
            VLDGGLAT L    H L   LWS  A L  +   AV  AH +F AAGA+V TT++YQV+ +G  G DG G D +      SV LAV A     P   VA S+GPYGA LAD SE  G Y     V GL AFHRPR+  L A+  G G      V A ET+PC+ EV A L  L     P   AWLS++   G      R R+GE + +A   A  VA  ++ AVG NC +P     A+ LA A  P+VV          YPNSG  ++ AT++W   +  +  P  + AW++A       VGGCC VG+D VAA  AA+
Sbjct:   16 VLDGGLATLLEQHGHDLSSHLWS--ARLLRDDPRAVEDAHREFFAAGAEVATTASYQVSFEGF-GADGVGRDEVEALLRRSVDLAVAARDAVAPDGWVAASVGPYGAVLADGSEYRGDY--DLDVAGLRAFHRPRLEVL-ASTVGDGAD----VLAVETIPCLAEVEAVLAELDGSGVP---AWLSLSAAGG------RTRAGEPLEEAFSMAADVA--EILAVGVNCTTPADAGSAVPLAGAHGPVVV----------YPNSGQSWNAATRSWEGESAFH--PDEVSAWVSAGARL---VGGCCRVGTDDVAALRAAL 298          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001B300DFA (homocysteine S-methyltransferase n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001B300DFA)

HSP 1 Score: 146 bits (369), Expect = 3.130e-38
Identity = 138/309 (44.66%), Postives = 167/309 (54.05%), Query Frame = 1
Query:    1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA--LAVSVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVV 900
            VLDGGLAT L    H L   LWS  A L  +  AAV AAH +F AAGA+V TT++YQV+ +G    G D GE A  L  SV LA  A     P   VA S+GPYGA LAD SE  G Y     V GL AFHRPR+  L A+  GSG      V A ETVPC+ EV A+   L  D     AWLS++   G      R R+GE +A+A   A  VA  ++ AVG NC +P   A A  AV   PLV G R  R  V YPNSG  ++ AT+ W  R+  ++    +  W+A   G    VGGCC VG + V
Sbjct:   16 VLDGGLATLLERHGHDLSSDLWS--ARLLRDEPAAVEAAHREFFAAGAEVATTASYQVSFEGFGAQGADRGEVAALLRRSVELAAAARDAVAPGGWVAASVGPYGAVLADGSEYRGDY--DLDVAGLRAFHRPRLEVL-ASTVGSGAD----VLAVETVPCLAEVEAVLAEL--DGTGVPAWLSLSAAGG------RTRAGEPLAEAFAMAADVA--EVIAVGVNCTTP---ADAGTAV---PLV-GAR--RPVVVYPNSGQSWNAATRMWEGRSAFHADD--VAGWVA---GGARLVGGCCRVGPEDV 291          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A3G9GAX1_9NEIS (Homocysteine S-methyltransferase n=1 Tax=Aquitalea magnusonii TaxID=332411 RepID=A0A3G9GAX1_9NEIS)

HSP 1 Score: 146 bits (369), Expect = 4.260e-38
Identity = 128/329 (38.91%), Postives = 164/329 (49.85%), Query Frame = 1
Query:    1 VLDGGLATALPAH--HLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA--LAVSVALAVGA----------ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASA---PLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRAA 930
            +LDG LATAL A    L   LWS   LL  E   A+   H D++ AGAD+ITTS+YQ + +G A  G+D  + A  + +SV LA+ A             + LVA S+GPYGA LAD SE  G Y  +  V  LM FHRPR+  L  A SG+       + A ET+PC  E  AL RLL ++FP   AW+S + RD        +  GER+AD +    AV   Q+ A+G NC  P  VA  L   AS    PL+          AYPNSG  +D   K W  +A+P         W   H      +GGCC  G   +AA  AA+  A
Sbjct:   20 LLDGALATALEARGFDLADPLWSARVLL--EAPQAIGQLHLDYLQAGADIITTSSYQASFEGFARRGLDRQQAAGLMQLSVDLALQARQRFMAEQPETVTAPLVAASVGPYGAMLADGSEYRGDYGLS--VAQLMDFHRPRLAVL--AASGAD------LLACETIPCPQEAEALARLLQQEFPATPAWISFSCRDA-----QHVWQGERLADCMAMLAAV--PQVVALGVNCSDPRWVAALLQQAASVTDKPLL----------AYPNSGEQWDAERKCWHGQASPARFAAQARRW---HQAGARLIGGCCRTGPAYIAALRAALDGA 316          
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A4Y9MNA5_9ACTN (Homocysteine S-methyltransferase n=1 Tax=Geodermatophilus sp. DF01_2 TaxID=2559610 RepID=A0A4Y9MNA5_9ACTN)

HSP 1 Score: 145 bits (367), Expect = 5.590e-38
Identity = 139/317 (43.85%), Postives = 163/317 (51.42%), Query Frame = 1
Query:    1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDALAV--SVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMT-VRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASA--PLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVR 924
            VLDGGLAT L    H L   LWS  A L  +   AV AAHA F AAGA V TT++YQV+ +G+A  G+D  E    V  SV LA G   P S VA S+GPYGA LAD SE TG YA    V+ L  +HRPRM  L  A +G+       V A ETVP   E  AL  L   D      WLS+T V D   +G  R R GE  AD    A  V A  + AVG NC +P  V  +L A A A  PLV          AYPNSG  +D A + W         P  + AW+ A       +GGCC VG   V+A AAA+R
Sbjct:   16 VLDGGLATQLEVQGHDLSSALWS--ARLLYDDPEAVVAAHAAFAAAGAQVATTASYQVSIEGLAAVGLDAAEARRLVVRSVQLA-GRGAPESWVAGSVGPYGAALADGSEYTGGYAGELGVDRLRQWHRPRMQWL--AEAGAD------VLACETVPAAAEAEAL--LEEADLLGLPVWLSLTTVVDD--EGAVRTRRGEPAADVFAMAHGVEA--VVAVGVNCTAPSAVGPSLAAAARAGKPLV----------AYPNSGEGWDAAARRWTGAGG--VDPADVLAWVDAGARL---IGGCCRVGPADVSALAAAIR 300          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E53ED223.090e-4343.79homocysteine S-methyltransferase n=1 Tax=Modestoba... [more]
A0A562INT4_9ACTN2.700e-4042.95Homocysteine S-methyltransferase n=2 Tax=Modestoba... [more]
A0A1I1TIL8_9ACTN2.550e-3944.41Homocysteine S-methyltransferase n=2 Tax=Klenkia T... [more]
A0A367A0B7_9ACTN3.710e-3943.63Homocysteine S-methyltransferase n=1 Tax=Geodermat... [more]
UPI001554E6704.730e-3942.44homocysteine S-methyltransferase n=1 Tax=Nocardioi... [more]
UPI0013587E975.730e-3939.70homocysteine S-methyltransferase n=1 Tax=Aquitalea... [more]
UPI001749A2292.840e-3842.32homocysteine S-methyltransferase n=1 Tax=Nocardioi... [more]
UPI001B300DFA3.130e-3844.66homocysteine S-methyltransferase n=2 Tax=unclassif... [more]
A0A3G9GAX1_9NEIS4.260e-3838.91Homocysteine S-methyltransferase n=1 Tax=Aquitalea... [more]
A0A4Y9MNA5_9ACTN5.590e-3843.85Homocysteine S-methyltransferase n=1 Tax=Geodermat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10378contigS-firma_F_contig10378:204..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1380393.JHVP01000003_gene800
Preferred namemmuM
PFAMsS-methyl_trans
Max annot lvl201174|Actinobacteria
KEGG rclassRC00003,RC00035
KEGG koko:K00547,ko:K21169
KEGG ReactionR00650
KEGG Pathwayko00270,ko01059,ko01100,ko01110,ko01130,map00270,map01059,map01100,map01110,map01130
KEGG ModuleM00825
Evalue8.81e-43
EggNOG OGsCOG2040@1|root,COG2040@2|Bacteria,2GIWK@201174|Actinobacteria,4EUZT@85013|Frankiales
EC2.1.1.10
Descriptionhomocysteine S-methyltransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size936
Cds size936
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.908568-CDS-S-firma_F_contig10378:203..11391622815569.908568-CDS-S-firma_F_contig10378:203..1139Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 204..1139 +
1696949423.2740943-CDS-S-firma_F_contig10378:203..11391696949423.2740943-CDS-S-firma_F_contig10378:203..1139Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 204..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10378.539.1prot_S-firma_F_contig10378.539.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10378 204..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10378.539.1

>prot_S-firma_F_contig10378.539.1 ID=prot_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=312bp
VLDGGLATALPAHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVIT
TSTYQVTPQGVAGVDGGEDALAVSVALAVGAATPSSLVAVSIGPYGAYLA
DNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETV
PCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVV
AAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPN
SGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVV
AACAAAVRAAPR
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mRNA from alignment at S-firma_F_contig10378:204..1139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10378.539.1 ID=mRNA_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=936bp|location=Sequence derived from alignment at S-firma_F_contig10378:204..1139+ (Sphaerotrichia firma ET2_F female)
GTGCTGGACGGCGGCCTGGCCACAGCCCTGCCCGCACACCACCTGCACCC CACGTTGTGGTCTGGCGGGGCGCTGCTGACGGAGGAGGGGCAGGCCGCCG TCGCGGCGGCCCACGCGGACTTTGTGGCCGCTGGCGCGGACGTCATCACG ACTTCCACGTACCAAGTAACGCCGCAGGGCGTTGCTGGGGTTGATGGCGG CGAGGACGCGTTGGCGGTGTCTGTGGCGCTTGCCGTGGGCGCGGCGACGC CGTCGAGCCTTGTGGCGGTGTCCATCGGGCCGTACGGCGCGTACTTGGCG GACAACAGCGAGGCCACCGGGTCGTACGCTTCGACGGCCACCGTGGAGGG CTTGATGGCCTTCCACCGTCCTCGAATGGTGGCGCTGAATGCGGCCATGT CGGGCAGTGGGCACCCGCAGGACGGGTTTGTGTTTGCGTTTGAGACGGTG CCGTGTATTGTGGAGGTGGTGGCACTGTGCCGGCTGCTGGCGGAGGATTT TCCCGAGCGGGCGGCGTGGCTGTCCATGACGGTGAGGGACGGCCCTGCGG ACGGTGGAGACAGGCTGCGGTCGGGGGAGCGCGTGGCTGACGCCGTCGTC GCCGCTGAGGCTGTTGCCGCCACCCAGTTGGCAGCCGTTGGCTGCAACTG TGTGTCACCGGGGGTTGTGGCAGGGGCGCTGCTCGCCGTCGCGTCGGCGC CTTTGGTGGTAGGTGGGCGGTACACCAGGCGGGGCGTCGCGTACCCGAAC TCGGGGTCGGTGTACGACGGTGCCACCAAGGCCTGGGTCCCGCGCGCCAC GCCGTACTCCATTCCACGCCTGCTCCCGGCATGGATCGCGGCCCACCCTG GGTTTCTTGCTTTTGTTGGCGGCTGCTGCAACGTCGGCTCGGATGTGGTG GCCGCCTGTGCGGCGGCGGTGCGGGCTGCACCCCGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10378:204..1139+

>mRNA_S-firma_F_contig10378.539.1 ID=mRNA_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1872bp|location=Sequence derived from alignment at S-firma_F_contig10378:204..1139+ (Sphaerotrichia firma ET2_F female)
GTGCTGGACGGCGGCCTGGCCACAGCCCTGCCCGCACACCACCTGCACCC
CACGTTGTGGTCTGGCGGGGCGCTGCTGACGGAGGAGGGGCAGGCCGCCG
TCGCGGCGGCCCACGCGGACTTTGTGGCCGCTGGCGCGGACGTCATCACG
ACTTCCACGTACCAAGTAACGCCGCAGGGCGTTGCTGGGGTTGATGGCGG
CGAGGACGCGTTGGCGGTGTCTGTGGCGCTTGCCGTGGGCGCGGCGACGC
CGTCGAGCCTTGTGGCGGTGTCCATCGGGCCGTACGGCGCGTACTTGGCG
GACAACAGCGAGGCCACCGGGTCGTACGCTTCGACGGCCACCGTGGAGGG
CTTGATGGCCTTCCACCGTCCTCGAATGGTGGCGCTGAATGCGGCCATGT
CGGGCAGTGGGCACCCGCAGGACGGGTTTGTGTTTGCGTTTGAGACGGTG
CCGTGTATTGTGGAGGTGGTGGCACTGTGCCGGCTGCTGGCGGAGGATTT
TCCCGAGCGGGCGGCGTGGCTGTCCATGACGGTGAGGGACGGCCCTGCGG
ACGGTGGAGACAGGCTGCGGTCGGGGGAGCGCGTGGCTGACGCCGTCGTC
GCCGCTGAGGCTGTTGCCGCCACCCAGTTGGCAGCCGTTGGCTGCAACTG
TGTGTCACCGGGGGTTGTGGCAGGGGCGCTGCTCGCCGTCGCGTCGGCGC
CTTTGGTGGTAGGTGGGCGGTACACCAGGCGGGGCGTCGCGTACCCGAAC
TCGGGGTCGGTGTACGACGGTGCCACCAAGGCCTGGGTCCCGCGCGCCAC
GCCGTACTCCATTCCACGCCTGCTCCCGGCATGGATCGCGGCCCACCCTG
GGTTTCTTGCTTTTGTTGGCGGCTGCTGCAACGTCGGCTCGGATGTGGTG
GCCGCCTGTGCGGCGGCGGTGCGGGCTGCACCCCGCGTGCTGGACGGCGG
CCTGGCCACAGCCCTGCCCGCACACCACCTGCACCCCACGTTGTGGTCTG
GCGGGGCGCTGCTGACGGAGGAGGGGCAGGCCGCCGTCGCGGCGGCCCAC
GCGGACTTTGTGGCCGCTGGCGCGGACGTCATCACGACTTCCACGTACCA
AGTAACGCCGCAGGGCGTTGCTGGGGTTGATGGCGGCGAGGACGCGTTGG
CGGTGTCTGTGGCGCTTGCCGTGGGCGCGGCGACGCCGTCGAGCCTTGTG
GCGGTGTCCATCGGGCCGTACGGCGCGTACTTGGCGGACAACAGCGAGGC
CACCGGGTCGTACGCTTCGACGGCCACCGTGGAGGGCTTGATGGCCTTCC
ACCGTCCTCGAATGGTGGCGCTGAATGCGGCCATGTCGGGCAGTGGGCAC
CCGCAGGACGGGTTTGTGTTTGCGTTTGAGACGGTGCCGTGTATTGTGGA
GGTGGTGGCACTGTGCCGGCTGCTGGCGGAGGATTTTCCCGAGCGGGCGG
CGTGGCTGTCCATGACGGTGAGGGACGGCCCTGCGGACGGTGGAGACAGG
CTGCGGTCGGGGGAGCGCGTGGCTGACGCCGTCGTCGCCGCTGAGGCTGT
TGCCGCCACCCAGTTGGCAGCCGTTGGCTGCAACTGTGTGTCACCGGGGG
TTGTGGCAGGGGCGCTGCTCGCCGTCGCGTCGGCGCCTTTGGTGGTAGGT
GGGCGGTACACCAGGCGGGGCGTCGCGTACCCGAACTCGGGGTCGGTGTA
CGACGGTGCCACCAAGGCCTGGGTCCCGCGCGCCACGCCGTACTCCATTC
CACGCCTGCTCCCGGCATGGATCGCGGCCCACCCTGGGTTTCTTGCTTTT
GTTGGCGGCTGCTGCAACGTCGGCTCGGATGTGGTGGCCGCCTGTGCGGC
GGCGGTGCGGGCTGCACCCCGC
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