mRNA_S-firma_F_contig10378.539.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001E53ED22 (homocysteine S-methyltransferase n=1 Tax=Modestobacter roseus TaxID=1181884 RepID=UPI001E53ED22) HSP 1 Score: 159 bits (402), Expect = 3.090e-43 Identity = 141/322 (43.79%), Postives = 167/322 (51.86%), Query Frame = 1
Query: 1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDG--GEDALAVSVALA---VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAE-DFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVG----SDVVAACAAAVR 924
VLDGGL+T L A H + LWS A L + AAV AAHA F AGA V+TT++YQ T G AG+D +A SVALA + AA + VA S+GPYGAYLAD SE TG Y +V L AFHRPR+ L A +G+ V A ET+P EV AL L D P AWLS+T GP DG R R GE +A+ A VA Q+ AVG NC P VA A+ A A A VAYPNSG +D A + W + + AW+ A VGGCC V V AA AAAVR
Sbjct: 1 VLDGGLSTELEARGHDVSSALWS--ARLLRDDPAAVVAAHAAFATAGAQVLTTASYQATLPGFAAAGIDADRARSLIAGSVALAREGLAAAARTGWVAGSVGPYGAYLADGSEYTGGYLDDVSVAQLRAFHRPRLALL--AEAGAD------VLALETLPGAAEVEALLTELGSLDVP---AWLSLTSTTGP-DGVPRTRRGEPLAEVAAMARGVA--QVVAVGVNCTDPAAVAAAMAAAAEAS-------GTSAVAYPNSGESWDAAARRWTGQPGVGDVS----AWLDAGARL---VGGCCRVRPADVEQVTAAVAAAVR 292
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A562INT4_9ACTN (Homocysteine S-methyltransferase n=2 Tax=Modestobacter roseus TaxID=1181884 RepID=A0A562INT4_9ACTN) HSP 1 Score: 152 bits (383), Expect = 2.700e-40 Identity = 137/319 (42.95%), Postives = 167/319 (52.35%), Query Frame = 1
Query: 1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVAGV----DGGEDALAVSVALA---VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVAL-CRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRA 927
VLDGGL+T L A H + LWS A L + AAV AAHA F AAGA V+TT++YQ T G A D D +A SV LA + AA + VA S+GPYGA+LAD SE TG Y +V L AFHRPR+ L A +G+ V A ET+P EV AL L + D P AWLS+T GP DG R R GE +A+ VAA +Q+ AVG NC P V A+ +A+A + AYPNSG +D A + W + + AW AA VGGCC V VAA AAA A
Sbjct: 14 VLDGGLSTELEARGHDVSSALWS--ARLLRDDPAAVVAAHAAFAAAGAQVLTTASYQATLPGFAAAGIDTDRARDLIAGSVRLAREGLAAAGRTGWVAGSVGPYGAFLADGSEYTGGYLDDVSVTELRAFHRPRLALL--AEAGAD------VLAVETLPGAAEVEALLAELESLDVP---AWLSLTSTTGP-DGVPRTRRGEPLAE--VAALVRGLSQVVAVGVNCTDPAGVPPAVAVMATAS-------GKPAAAYPNSGERWDAAARRWTGQPGVGDVT----AWTAAGARL---VGGCCRVRPADVAAIAAATSA 302
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A1I1TIL8_9ACTN (Homocysteine S-methyltransferase n=2 Tax=Klenkia TaxID=2183612 RepID=A0A1I1TIL8_9ACTN) HSP 1 Score: 149 bits (375), Expect = 2.550e-39 Identity = 139/313 (44.41%), Postives = 164/313 (52.40%), Query Frame = 1
Query: 1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDGGEDALAVSVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERA-AWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRL-LPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
VLDGGL+T L + H + LWS A L + AV AHA F AAGA V TT++YQ T G AG +A SV LA A PSS VA S+GPYGAYLAD SE TG+Y S TV L FHRPR+ L A +G V A ET+P EV AL LAE P AW+S+TV DGP G R R GE +A V A+ A + AVG NC P VA A+ A A+ V YPNSG +D A + W T Y+ +P W+AA VGGCC V D VA AAA+
Sbjct: 13 VLDGGLSTELESRGHDVTSALWS--ARLLRDDPDAVRDAHAAFEAAGAQVATTASYQATAPGFAAAGYANAPGLIARSVQLAREGA-PSSWVAGSVGPYGAYLADGSEYTGAYLSDVTVAQLREFHRPRLQVL--AEAGVD------VLACETLPGAAEVEAL---LAELEPLGVPAWISLTVVDGP--DGVRTRRGEPLASVV----AMCAGSVLAVGVNCTDPAAVAPAVAAGAT-------------VVYPNSGEGWDAAGRRW----TGYTGAGWDVPGWVAAGARL---VGGCCRVRPDDVARVAAAI 285
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A367A0B7_9ACTN (Homocysteine S-methyltransferase n=1 Tax=Geodermatophilus sp. TF02-6 TaxID=2250575 RepID=A0A367A0B7_9ACTN) HSP 1 Score: 149 bits (375), Expect = 3.710e-39 Identity = 137/314 (43.63%), Postives = 163/314 (51.91%), Query Frame = 1
Query: 1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQG--VAGVDGGEDA--LAVSVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMT-VRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
+LDGGLAT L H L LWS A L + AV AAHA F AAGA V+TT++YQ + +G AGV E +A SV LA A P + VA S+GPYGA LAD SE TG Y + +V L AFHRPRM L AA + V A ETVP VE AL + D WLS+T V D DG R R GER A+AV A A + AVG NC +P V +L ASA + VAYPNSG +D A + W P P +P W+AA VGGCC V +A AAA+
Sbjct: 16 LLDGGLATELEVQGHDLSSALWS--ARLLRDPPEAVVAAHAAFAAAGAQVVTTASYQASVEGFAAAGVGAAEARRLIASSVQLARRGA-PGAWVAGSVGPYGAVLADGSEYTGDYCARMSVAELRAFHRPRMQLLAAAGAD--------VLACETVPAAVEAEAL--VAEADALGVPVWLSLTTVVDD--DGVVRTRRGER-AEAVFAL-AAGVDAVVAVGVNCTAPSAVGPSLAVAASADTPL--------VAYPNSGEGWDAAARRWT--GVPGVAPDAVPPWVAAGARL---VGGCCRVRPAHIAGIAAAL 299
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001554E670 (homocysteine S-methyltransferase n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001554E670) HSP 1 Score: 149 bits (375), Expect = 4.730e-39 Identity = 132/311 (42.44%), Postives = 165/311 (53.05%), Query Frame = 1
Query: 1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGE--DALAVSVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVA-LCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVA 903
VLDGGLAT L H L LWS A L + AA+ AH +F AAGA+V TT++YQV+ +G GVD GE L SVALA A A P VA S+GPYGA LAD SE G Y V L AFHRPR+ L A+ G+G V A ETVPC+ EV A L L P AWLS++ +G R R+GE + +A A VA ++ AVG NC +P A A A + G + + V YPNSG +D +AW R+ + P + AW+AA VGGCC VG + +A
Sbjct: 24 VLDGGLATLLERHGHDLSSHLWS--ARLLRDDPAAIEDAHREFFAAGAEVATTASYQVSFEGFGTEGVDRGEVERLLRRSVALAAAARDEAAPGGWVAASVGPYGAVLADGSEYRGDYGLD--VAALRAFHRPRLDVL-ASTVGAGAD----VLAVETVPCLAEVEAVLAELDGSGVP---AWLSLSASEG------RTRAGEPLEEAFAMAADVA--EVLAVGVNCTTP--------ADAGAAVEAAGAH-KPAVVYPNSGQSWDAEARAWTGRSAFH--PEDVSAWVAAGARL---VGGCCRVGPEDIA 300
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI0013587E97 (homocysteine S-methyltransferase n=1 Tax=Aquitalea denitrificans TaxID=519081 RepID=UPI0013587E97) HSP 1 Score: 149 bits (375), Expect = 5.730e-39 Identity = 131/330 (39.70%), Postives = 166/330 (50.30%), Query Frame = 1
Query: 1 VLDGGLATALPAH--HLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA----LAVSVALA----------VGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGAL---LAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRA 927
+LDG LATAL A L LWS LL E A+A H D++ AGAD+ITT++YQ + +G A G+D + A L+V +AL VG P LVA S+GPYGA LAD SE G Y + T LM FHRPR+ L A SG+ + A ET+PC E +AL RLL E+FP AW+S + RD R+ GER+AD + + VA Q+ A+G NC P V G L AV PL+ AYPNSG +DG K W A+ W A +GGCC G +AA A + A
Sbjct: 20 LLDGALATALEARGFDLADPLWSARVLL--EAPQAIAQLHLDYLQAGADIITTASYQASFEGFARRGLDRQQAAGLMQLSVELALQARQHFLANQPVGQQAP--LVAASVGPYGAMLADGSEYRGDYGLSVTQ--LMDFHRPRLAVL--AASGAD------LLACETIPCPEEALALARLLQEEFPATPAWISFSCRDAV-----RVWQGERLADCITMLDGVA--QVVALGVNCTDPRWVEGLLQQAAAVTDKPLL----------AYPNSGEQWDGQHKCWHGTASTADFSAQARRWRQAGARL---IGGCCRTGPAHIAALRACLDA 315
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001749A229 (homocysteine S-methyltransferase n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI001749A229) HSP 1 Score: 146 bits (369), Expect = 2.840e-38 Identity = 135/319 (42.32%), Postives = 169/319 (52.98%), Query Frame = 1
Query: 1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVAGVDG-GEDALAV----SVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVA-LCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGAL-LAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAV 921
VLDGGLAT L H L LWS A L + AV AH +F AAGA+V TT++YQV+ +G G DG G D + SV LAV A P VA S+GPYGA LAD SE G Y V GL AFHRPR+ L A+ G G V A ET+PC+ EV A L L P AWLS++ G R R+GE + +A A VA ++ AVG NC +P A+ LA A P+VV YPNSG ++ AT++W + + P + AW++A VGGCC VG+D VAA AA+
Sbjct: 16 VLDGGLATLLEQHGHDLSSHLWS--ARLLRDDPRAVEDAHREFFAAGAEVATTASYQVSFEGF-GADGVGRDEVEALLRRSVDLAVAARDAVAPDGWVAASVGPYGAVLADGSEYRGDY--DLDVAGLRAFHRPRLEVL-ASTVGDGAD----VLAVETIPCLAEVEAVLAELDGSGVP---AWLSLSAAGG------RTRAGEPLEEAFSMAADVA--EILAVGVNCTTPADAGSAVPLAGAHGPVVV----------YPNSGQSWNAATRSWEGESAFH--PDEVSAWVSAGARL---VGGCCRVGTDDVAALRAAL 298
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: UPI001B300DFA (homocysteine S-methyltransferase n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001B300DFA) HSP 1 Score: 146 bits (369), Expect = 3.130e-38 Identity = 138/309 (44.66%), Postives = 167/309 (54.05%), Query Frame = 1
Query: 1 VLDGGLATALP--AHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA--LAVSVALAVGA---ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASAPLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVV 900
VLDGGLAT L H L LWS A L + AAV AAH +F AAGA+V TT++YQV+ +G G D GE A L SV LA A P VA S+GPYGA LAD SE G Y V GL AFHRPR+ L A+ GSG V A ETVPC+ EV A+ L D AWLS++ G R R+GE +A+A A VA ++ AVG NC +P A A AV PLV G R R V YPNSG ++ AT+ W R+ ++ + W+A G VGGCC VG + V
Sbjct: 16 VLDGGLATLLERHGHDLSSDLWS--ARLLRDEPAAVEAAHREFFAAGAEVATTASYQVSFEGFGAQGADRGEVAALLRRSVELAAAARDAVAPGGWVAASVGPYGAVLADGSEYRGDY--DLDVAGLRAFHRPRLEVL-ASTVGSGAD----VLAVETVPCLAEVEAVLAEL--DGTGVPAWLSLSAAGG------RTRAGEPLAEAFAMAADVA--EVIAVGVNCTTP---ADAGTAV---PLV-GAR--RPVVVYPNSGQSWNAATRMWEGRSAFHADD--VAGWVA---GGARLVGGCCRVGPEDV 291
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A3G9GAX1_9NEIS (Homocysteine S-methyltransferase n=1 Tax=Aquitalea magnusonii TaxID=332411 RepID=A0A3G9GAX1_9NEIS) HSP 1 Score: 146 bits (369), Expect = 4.260e-38 Identity = 128/329 (38.91%), Postives = 164/329 (49.85%), Query Frame = 1
Query: 1 VLDGGLATALPAH--HLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDA--LAVSVALAVGA----------ATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMTVRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASA---PLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVRAA 930
+LDG LATAL A L LWS LL E A+ H D++ AGAD+ITTS+YQ + +G A G+D + A + +SV LA+ A + LVA S+GPYGA LAD SE G Y + V LM FHRPR+ L A SG+ + A ET+PC E AL RLL ++FP AW+S + RD + GER+AD + AV Q+ A+G NC P VA L AS PL+ AYPNSG +D K W +A+P W H +GGCC G +AA AA+ A
Sbjct: 20 LLDGALATALEARGFDLADPLWSARVLL--EAPQAIGQLHLDYLQAGADIITTSSYQASFEGFARRGLDRQQAAGLMQLSVDLALQARQRFMAEQPETVTAPLVAASVGPYGAMLADGSEYRGDYGLS--VAQLMDFHRPRLAVL--AASGAD------LLACETIPCPQEAEALARLLQQEFPATPAWISFSCRDA-----QHVWQGERLADCMAMLAAV--PQVVALGVNCSDPRWVAALLQQAASVTDKPLL----------AYPNSGEQWDAERKCWHGQASPARFAAQARRW---HQAGARLIGGCCRTGPAYIAALRAALDGA 316
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Match: A0A4Y9MNA5_9ACTN (Homocysteine S-methyltransferase n=1 Tax=Geodermatophilus sp. DF01_2 TaxID=2559610 RepID=A0A4Y9MNA5_9ACTN) HSP 1 Score: 145 bits (367), Expect = 5.590e-38 Identity = 139/317 (43.85%), Postives = 163/317 (51.42%), Query Frame = 1
Query: 1 VLDGGLATALPA--HHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITTSTYQVTPQGVA--GVDGGEDALAV--SVALAVGAATPSSLVAVSIGPYGAYLADNSEATGSYASTATVEGLMAFHRPRMVALNAAMSGSGHPQDGFVFAFETVPCIVEVVALCRLLAEDFPERAAWLSMT-VRDGPADGGDRLRSGERVADAVVAAEAVAATQLAAVGCNCVSPGVVAGALLAVASA--PLVVGGRYTRRGVAYPNSGSVYDGATKAWVPRATPYSIPRLLPAWIAAHPGFLAFVGGCCNVGSDVVAACAAAVR 924
VLDGGLAT L H L LWS A L + AV AAHA F AAGA V TT++YQV+ +G+A G+D E V SV LA G P S VA S+GPYGA LAD SE TG YA V+ L +HRPRM L A +G+ V A ETVP E AL L D WLS+T V D +G R R GE AD A V A + AVG NC +P V +L A A A PLV AYPNSG +D A + W P + AW+ A +GGCC VG V+A AAA+R
Sbjct: 16 VLDGGLATQLEVQGHDLSSALWS--ARLLYDDPEAVVAAHAAFAAAGAQVATTASYQVSIEGLAAVGLDAAEARRLVVRSVQLA-GRGAPESWVAGSVGPYGAALADGSEYTGGYAGELGVDRLRQWHRPRMQWL--AEAGAD------VLACETVPAAAEAEAL--LEEADLLGLPVWLSLTTVVDD--EGAVRTRRGEPAADVFAMAHGVEA--VVAVGVNCTAPSAVGPSLAAAARAGKPLV----------AYPNSGEGWDAAARRWTGAGG--VDPADVLAWVDAGARL---IGGCCRVGPADVSALAAAIR 300 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10378.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10378.539.1 >prot_S-firma_F_contig10378.539.1 ID=prot_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=312bp VLDGGLATALPAHHLHPTLWSGGALLTEEGQAAVAAAHADFVAAGADVITback to top mRNA from alignment at S-firma_F_contig10378:204..1139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10378.539.1 ID=mRNA_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=936bp|location=Sequence derived from alignment at S-firma_F_contig10378:204..1139+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10378:204..1139+ >mRNA_S-firma_F_contig10378.539.1 ID=mRNA_S-firma_F_contig10378.539.1|Name=mRNA_S-firma_F_contig10378.539.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1872bp|location=Sequence derived from alignment at S-firma_F_contig10378:204..1139+ (Sphaerotrichia firma ET2_F female)back to top |