mRNA_S-firma_F_contig10374.535.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10374.535.1
Unique NamemRNA_S-firma_F_contig10374.535.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10374.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10374contigS-firma_F_contig10374:4066..4841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size574
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10374.535.1prot_S-firma_F_contig10374.535.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10374 4316..4841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.7471492-UTR-S-firma_F_contig10374:4065..43151622815569.7471492-UTR-S-firma_F_contig10374:4065..4315Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10374 4066..4315 -
1696949423.1826088-UTR-S-firma_F_contig10374:4065..43151696949423.1826088-UTR-S-firma_F_contig10374:4065..4315Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10374 4066..4315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.762662-CDS-S-firma_F_contig10374:4315..44501622815569.762662-CDS-S-firma_F_contig10374:4315..4450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10374 4316..4450 -
1696949423.1985729-CDS-S-firma_F_contig10374:4315..44501696949423.1985729-CDS-S-firma_F_contig10374:4315..4450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10374 4316..4450 -
1622815569.7733161-CDS-S-firma_F_contig10374:4652..48411622815569.7733161-CDS-S-firma_F_contig10374:4652..4841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10374 4653..4841 -
1696949423.210078-CDS-S-firma_F_contig10374:4652..48411696949423.210078-CDS-S-firma_F_contig10374:4652..4841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10374 4653..4841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10374.535.1

>prot_S-firma_F_contig10374.535.1 ID=prot_S-firma_F_contig10374.535.1|Name=mRNA_S-firma_F_contig10374.535.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=108bp
ASLKIFLYLHTTLVALPSVPGLRVPSKAEKVKVCKSSHPSNNSREFFSRV
TQHVRPNGNQQQRAGMKRSRETCWRVEHRSPPRTPRATLLSTLLPFRGKR
RWCSSCC*
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mRNA from alignment at S-firma_F_contig10374:4066..4841-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10374.535.1 ID=mRNA_S-firma_F_contig10374.535.1|Name=mRNA_S-firma_F_contig10374.535.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=776bp|location=Sequence derived from alignment at S-firma_F_contig10374:4066..4841- (Sphaerotrichia firma ET2_F female)
GCTTCACTAAAGATTTTTCTGTATTTGCACACTACTTTGGTTGCGTTACC
GTCGGTTCCTGGTTTGCGGGTGCCCTCCAAGGCAGAAAAGGTGAAAGTAT
GCAAAAGCTCCCACCCAAGCAACAACAGCAGAGAGTTCTTCAGCAGGGTC
ACCCAGCATGTCAGACCCAATGGCAACCAACAGCAGCGGGCGAGAGGCAC
TCCAAGGAGGTAGAAGTGCACAAGTTTGATCTCTTCTCCCACGAACTTCT
CACACCCGAGCAGTGGGCGGAGTTGCTGAGAGTTCCACTAGAGCTTGCCG
CCGCCAAGGGCAACAGAGACCTCGACAGCAGCAGCAGCTAGCTGGTGAGG
GCAATAGCAGAGATCAGGTATGCAGCACGAGGCTGTTAAAGGCGGGTATG
AAAAGGTCGCGAGAGACCTGCTGGAGAGTGGAGCATCGCTCGCCGCCAAG
GACACCAAGGGCCACACTCCTCTCCACGTTGCTGCCCTTCAGGGGCAAAC
GGCGATGGTGTAGCAGTTGCTGCTGAAGGGTCGGCTGAGAAAGACGTGCT
GACGACACGCAGAACGGACGCCGCTACTCTGGCAGCCTACCAGGGTCACT
TGGCTTCCGCACTTCCTCTGTTGGCTACCGGCGCGGACGTCAGCGCAAGA
TGCGGCGAGTTCGAATCATCAGTTTTGCACGAGGCGGCTAAAGAGGGGCA
TGTTGAGTTCTTGAGGGCTGCTGTGATCGTACACGGGGCTGGCGTGGACG
CTGGCGACATAGACCAAAACACAACC
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Coding sequence (CDS) from alignment at S-firma_F_contig10374:4066..4841-

>mRNA_S-firma_F_contig10374.535.1 ID=mRNA_S-firma_F_contig10374.535.1|Name=mRNA_S-firma_F_contig10374.535.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=648bp|location=Sequence derived from alignment at S-firma_F_contig10374:4066..4841- (Sphaerotrichia firma ET2_F female)
GCTTCACTAAAGATTTTTCTGTATTTGCACACTACTTTGGTTGCGTTACC
GTCGGTTCCTGGTTTGCGGGTGCCCTCCAAGGCAGAAAAGGTGAAAGTAT
GCAAAAGCTCCCACCCAAGCAACAACAGCAGAGAGTTCTTCAGCAGGGTC
ACCCAGCATGTCAGACCCAATGGCAACCAACAGCAGCGGGCTTCACTAAA
GATTTTTCTGTATTTGCACACTACTTTGGTTGCGTTACCGTCGGTTCCTG
GTTTGCGGGTGCCCTCCAAGGCAGAAAAGGTGAAAGTATGCAAAAGCTCC
CACCCAAGCAACAACAGCAGAGAGTTCTTCAGCAGGGTCACCCAGCATGT
CAGACCCAATGGCAACCAACAGCAGCGGGCGGGTATGAAAAGGTCGCGAG
AGACCTGCTGGAGAGTGGAGCATCGCTCGCCGCCAAGGACACCAAGGGCC
ACACTCCTCTCCACGTTGCTGCCCTTCAGGGGCAAACGGCGATGGTGTAG
CAGTTGCTGCTGAGCGGGTATGAAAAGGTCGCGAGAGACCTGCTGGAGAG
TGGAGCATCGCTCGCCGCCAAGGACACCAAGGGCCACACTCCTCTCCACG
TTGCTGCCCTTCAGGGGCAAACGGCGATGGTGTAGCAGTTGCTGCTGA
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