mRNA_S-firma_F_contig10373.534.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI) HSP 1 Score: 365 bits (937), Expect = 2.860e-120 Identity = 197/281 (70.11%), Postives = 230/281 (81.85%), Query Frame = 1
Query: 1 ARIFRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQ-AISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSA--KGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMDIEAGVFEEGLPLPARTECMGFFVDRLE 834
ARIFRSNY EVF RLAEACR G DHDA LEAV+ +LVAL+ + S D+RLAATLAGM++GLG+AE L+ L KL ++ERQL AKS+ KG SRK+QGLE QVER+ S+ E LT SDLV++KITQKRYRDVS ++RS AL+GLSKIMLALPE YVQDKLMRYHGWSL+DK PAVRVLALQSIQRLLR SS RL+KFS HFF+RVKAM++DVD+ V+REA V LRLMLS GFL+++ER DEMDIEAG+FEEGL LPARTECMGFFVD ++
Sbjct: 313 ARIFRSNYCEVFNRLAEACR-RGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLREKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERVFSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQDKLMRYHGWSLNDKNPAVRVLALQSIQRLLRDPASSARLEKFSAHFFSRVKAMIQDVDSAVAREAGVALRLMLSNGFLESIERADEMDIEAGIFEEGLGLPARTECMGFFVDGIQ 592
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE) HSP 1 Score: 340 bits (871), Expect = 7.980e-104 Identity = 184/267 (68.91%), Postives = 218/267 (81.65%), Query Frame = 1
Query: 43 LAEACRGAGGDHDADILEAVILLLVAL-TQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSA--KGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMDIEAGVFEEGLPLPARTECMGFFVDRLE 834
L EACR G DHDA LEAV+ +LVAL + + S D+RLAATLAGM++GLG+AE L+ L+ KL ++ERQL AKS+ KG SRK+QGLE QVERI S+ E LT SDLV++KITQKRYRDVS ++RS AL+GLSKIMLALPE YVQDKLMRYHGWSL+DK PAVRVLALQSIQRLLR SS RL+KFS HFF+RVK M++DVD+TV+REA VVLRLMLS G+L+++ER DEMDIEAG+FEE L LPARTECMGFFVD ++
Sbjct: 105 LVEACR-RGDDHDASTLEAVVGVLVALASHSASQDIRLAATLAGMEVGLGVAEDLAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERILSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQDKLMRYHGWSLNDKNPAVRVLALQSIQRLLRDPASSARLEKFSAHFFSRVKTMIQDVDSTVAREAVVVLRLMLSNGYLESIERADEMDIEAGIFEEDLSLPARTECMGFFVDGIQ 370
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A7S2USW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USW8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 9.550e-16 Identity = 71/264 (26.89%), Postives = 126/264 (47.73%), Query Frame = 1
Query: 76 HDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKS-AKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQ----KRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFS-----GHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMD-IEAGVFEEGLPLPARTECMGFFVDRLE 834
+DA++ +I+ ++ L DVR AA +A +++G + + L KL +A RQLA A +KG S KV+ L+ QV+ + + L ++V + Q RYRD + +R+ LD LS++ + P++++ DK ++Y GW +SDK VR+ +L+ + ++D + F R+ DV V +A +L L GF D+++ E + I E R + + F +++LE
Sbjct: 251 YDAELARDLIMRMLELVSVAQPDVRAAAVIACLEMGHAMLDKTVVLGTKLDIASRQLAAAIGVSKGKSR-----SSKVESLQHQVDSLKRTRADL---DEIVLGPVIQGVFIHRYRDSNMHIRAHCLDALSRMTIQRPDLFLNDKYLKYFGWMMSDKDECVRIASLKGLYAPFAAAKKGSKVDLSAMENVVNKFLPRMTECTLDVSIQVQEQAMALLLGNLREGFFDDVDDEKMWNQINICALAEDTSPTVRRDALYFVMEQLE 506
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A7N0ULZ7_KALFE (SCD domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ULZ7_KALFE) HSP 1 Score: 85.5 bits (210), Expect = 5.240e-15 Identity = 58/240 (24.17%), Postives = 112/240 (46.67%), Query Frame = 1
Query: 10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDN 729
F+ N ++ + L + C G D+ + E + ++AL+ R A+L G+ L + L A+ +RQL K + +V L ++ I + +L ++ + RYRD+ +R+ + L L+ P +++QD+ ++Y GW+L+DK VR ++ ++Q L + +D+ L F+ F NR+ + D+D +V+ A ++ +LS L N
Sbjct: 168 FKDNLVKFWDMLVKECSN-GPLFDSVLFEKITDYVIALSCTPPRVYRQVASLVGLSLVTSFVSVANVLGAQRETTQRQLNAEKKKRAEGP-------RVDSLNKRLSAIQPKINILEELVRKIFQGLFVHRYRDIDPNIRTTCIQSLGYWNLSYPSLFLQDRYLKYLGWTLNDKNAGVRKASVHALQNLYKVDDNIPSLSLFTERFSNRIIELADDIDISVAVSAIGLINQLLSNQLLSN 399
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: K0SBC6_THAOC (SCD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBC6_THAOC) HSP 1 Score: 84.7 bits (208), Expect = 1.010e-14 Identity = 74/277 (26.71%), Postives = 127/277 (45.85%), Query Frame = 1
Query: 79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQ----KRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLA-------LQSIQRLLRHE-----DSSVRLDKFSGHFFNRVKAM--------LRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMD-IEAGVFEEGLPLPARTECMGFFVDRLE 834
DA+++ +I L+ LT DVR LA + I + S L K+ VA+RQ A AK K + L+ +V+ + ++E L ++V + Q RYRD + +R+ L+ LS++ L P++++ DK ++Y GW + DK VR A ++I++ +E DS + +DK + V A + DV V A ++ +L+ GFLD E ++ D + A P + + + F +D+LE
Sbjct: 361 DAELIRGLITRLLELTPVGQPDVRAGTCLAVFSMAHAILDQSSMLVKKMDVAQRQYEAA--AKARKSPKNRGGDKAESLKLRVDSLKRTIEDL---EEVVLGPVIQGLFVNRYRDSNEHIRAMCLESLSRMTLQRPDLFLNDKYLKYFGWMMHDKFAVVRKAAYFGILAPFEAIEKSKDNEVLAGYDSHLMVDKIDLSMLDNVVAKFIATMSDAVMDVSVDVQEVAMKLMLALLNNGFLDEHEGDEIWDKVNARALAADAPPTVQKDSLYFILDQLE 632
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A3Q3SNX4_9TELE (SCD domain-containing protein n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3SNX4_9TELE) HSP 1 Score: 82.0 bits (201), Expect = 4.460e-14 Identity = 62/236 (26.27%), Postives = 118/236 (50.00%), Query Frame = 1
Query: 10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAG 717
F++ E Q L CR + +D + +++ LL L+ + R +TL ++L G+ + L +L +RQ KS KG S K++ L+ ++ + + E L++ + + + RYRD + +R+A ++ L + PE ++ DK ++Y GW+L DK VR+ ++++Q L + ++ RL+ F+ F R+ +M+ D D V+ E +L L+ G
Sbjct: 120 FKAGLSEFAQVLVYCCRNSL-IYDEYLFPSLLSLLTGLSDSQVRAFRHTSTLLAVKLMTGLVDVAVTLSVQLQTTQRQCDMEKS-KGIHDRA---SDKLEKLQATIKELQENREELSSLMNATFRGVFVHRYRDRLSEIRAACIEELGMWLKTDPEDFLNDKCLKYLGWTLHDKQSPVRLQCVRALQGLYQEKEFIGRLELFTSRFKERMLSMVLDKDPDVAVEIVKLLLLIQQCG 350
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A2P6NU25_9EUKA (Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NU25_9EUKA) HSP 1 Score: 82.0 bits (201), Expect = 4.960e-14 Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query: 79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRL 702
D L+++ + A + A++ R AT+A M++ + + +++ K A + + KG S+K++ L + R+ + + L A +++Y K YRD +R ++ L + + + PE Y+ DKL++Y GW+LSDK VR+LAL+ ++RL + + L+ F F NR+ M+ D + V EA V+ L
Sbjct: 213 DGHFLDSISSWISAFSNALARPFRHTATMAAMEVNSALIKVINERINKDISALDRSISTERRKGASSG----SQKMKDLTKKKNRLEQNKQQLQEAMNVLY-----KGYRDTVPKIRCTCVEALGRWINSYPEFYLDDKLLKYIGWALSDKDARVRILALKVVERLYAQPELADTLEIFISTFENRLIQMVADNEIDVGVEALKVVTL 411
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: UPI0009E39DA2 (sister-chromatid cohesion protein 3-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E39DA2) HSP 1 Score: 82.4 bits (202), Expect = 5.310e-14 Identity = 62/242 (25.62%), Postives = 114/242 (47.11%), Query Frame = 1
Query: 10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNME 735
F+ N + L C+ G D + + + ++AL+ R ATL G+QL + + L + +RQL K + +V L ++ + + V+ ++ + RYRDV + +R + + L +L+ P +++QD ++Y GW+L+DKV AVR ++ S+Q L +D+ L F+ F NR+ + D+D +V+ A +L+L+L L + E
Sbjct: 93 FKENLALFWDTLVLECQN-GPLFDNILFDKCMDYVIALSCTPPRIYRHVATLVGLQLVTSLIAAAKILAGQRETTQRQLNAEKKKRSDGP-------RVDSLNKRLTQTHKVISVIEEMMRKLFQGLFMHRYRDVDSDIRVSCIRSLGVWILSYPSLFLQDLYLKYLGWTLNDKVAAVRKTSVLSLQNLYEVDDNVPSLGLFTERFCNRMIELADDIDISVAVSAIGLLKLLLRHQLLTDEE 326
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A2P6MXW1_9EUKA (Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MXW1_9EUKA) HSP 1 Score: 81.3 bits (199), Expect = 1.410e-13 Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query: 79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRL 702
D L+++ + A + A++ R AT+A M++ + + +++ K A + + KG S+K++ L + R+ + + L A +++Y K YRD +R ++ L + + + PE Y+ DKL++Y GW+LSDK VR+LAL+ ++RL + + L+ F F NR+ M+ D + V EA V+ L
Sbjct: 142 DGYFLDSISSWISAFSNALARPFRHTATMAAMEVNSALIKVINERINKDISALDRSISTERRKGASSG----SQKMKDLTKKKNRLEQNKQQLQEAMNVLY-----KGYRDTVPEIRCTCVEALGRWINSYPEFYLDDKLLKYIGWALSDKDARVRILALKVVERLYAQPELADTLEIFISTFENRLIQMVADNEIDVGVEALKVVTL 340
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: UPI000E45E6CA (cohesin subunit SA-2-like n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E45E6CA) HSP 1 Score: 80.5 bits (197), Expect = 2.610e-13 Identity = 61/232 (26.29%), Postives = 117/232 (50.43%), Query Frame = 1
Query: 10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLM 705
F++ E Q L CR + +D + +++ LL L+ + R +TL ++L G+ + L +L +RQ KS KG S K++ L+ ++ + + E L++ + + + RYRD + +R+A ++ L + PE ++ DK ++Y GW+L DK VR+ ++++Q L + ++ RL+ F+ F R+ +M+ D D V+ E +L L+
Sbjct: 184 FKAGLSEFAQVLVYCCRNSL-IYDEYLFPSLLSLLTGLSDSQVRAFRHTSTLLAVKLMTGLVDVAVTLSVQLQTTQRQCDMEKS-KGIHDRA---SDKLEKLQATIKELQENREELSSLMNATFRGVFVHRYRDRLSEIRAACIEELGMWLKTDPEDFLNDKCLKYLGWTLHDKQSPVRLQCVRALQGLYQEKEFIGRLELFTSRFKERMLSMVLDKDPDVAVEIVKLLLLI 410 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10373.534.1 >prot_S-firma_F_contig10373.534.1 ID=prot_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=278bp ARIFRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRback to top mRNA from alignment at S-firma_F_contig10373:1770..4937- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10373.534.1 ID=mRNA_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3168bp|location=Sequence derived from alignment at S-firma_F_contig10373:1770..4937- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10373:1770..4937- >mRNA_S-firma_F_contig10373.534.1 ID=mRNA_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1668bp|location=Sequence derived from alignment at S-firma_F_contig10373:1770..4937- (Sphaerotrichia firma ET2_F female)back to top |