mRNA_S-firma_F_contig10373.534.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10373.534.1
Unique NamemRNA_S-firma_F_contig10373.534.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 2.860e-120
Identity = 197/281 (70.11%), Postives = 230/281 (81.85%), Query Frame = 1
Query:    1 ARIFRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQ-AISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSA--KGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMDIEAGVFEEGLPLPARTECMGFFVDRLE 834
            ARIFRSNY EVF RLAEACR  G DHDA  LEAV+ +LVAL+  + S D+RLAATLAGM++GLG+AE L+ L  KL ++ERQL  AKS+  KG        SRK+QGLE QVER+ S+ E LT  SDLV++KITQKRYRDVS ++RS AL+GLSKIMLALPE YVQDKLMRYHGWSL+DK PAVRVLALQSIQRLLR   SS RL+KFS HFF+RVKAM++DVD+ V+REA V LRLMLS GFL+++ER DEMDIEAG+FEEGL LPARTECMGFFVD ++
Sbjct:  313 ARIFRSNYCEVFNRLAEACR-RGDDHDASTLEAVVGMLVALSSHSASQDIRLAATLAGMEMGLGVAEELAGLREKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERVFSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQDKLMRYHGWSLNDKNPAVRVLALQSIQRLLRDPASSARLEKFSAHFFSRVKAMIQDVDSAVAREAGVALRLMLSNGFLESIERADEMDIEAGIFEEGLGLPARTECMGFFVDGIQ 592          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 7.980e-104
Identity = 184/267 (68.91%), Postives = 218/267 (81.65%), Query Frame = 1
Query:   43 LAEACRGAGGDHDADILEAVILLLVAL-TQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSA--KGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMDIEAGVFEEGLPLPARTECMGFFVDRLE 834
            L EACR  G DHDA  LEAV+ +LVAL + + S D+RLAATLAGM++GLG+AE L+ L+ KL ++ERQL  AKS+  KG        SRK+QGLE QVERI S+ E LT  SDLV++KITQKRYRDVS ++RS AL+GLSKIMLALPE YVQDKLMRYHGWSL+DK PAVRVLALQSIQRLLR   SS RL+KFS HFF+RVK M++DVD+TV+REA VVLRLMLS G+L+++ER DEMDIEAG+FEE L LPARTECMGFFVD ++
Sbjct:  105 LVEACR-RGDDHDASTLEAVVGVLVALASHSASQDIRLAATLAGMEVGLGVAEDLAGLHEKLGLSERQLEAAKSSAGKGGGKKAAEKSRKIQGLESQVERILSATETLTTVSDLVFSKITQKRYRDVSPLIRSIALEGLSKIMLALPEFYVQDKLMRYHGWSLNDKNPAVRVLALQSIQRLLRDPASSARLEKFSAHFFSRVKTMIQDVDSTVAREAVVVLRLMLSNGYLESIERADEMDIEAGIFEEDLSLPARTECMGFFVDGIQ 370          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A7S2USW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USW8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.550e-16
Identity = 71/264 (26.89%), Postives = 126/264 (47.73%), Query Frame = 1
Query:   76 HDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKS-AKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQ----KRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFS-----GHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMD-IEAGVFEEGLPLPARTECMGFFVDRLE 834
            +DA++   +I+ ++ L      DVR AA +A +++G  + +    L  KL +A RQLA A   +KG        S KV+ L+ QV+ +  +   L    ++V   + Q     RYRD +  +R+  LD LS++ +  P++++ DK ++Y GW +SDK   VR+ +L+ +           ++D  +       F  R+     DV   V  +A  +L   L  GF D+++ E   + I      E      R + + F +++LE
Sbjct:  251 YDAELARDLIMRMLELVSVAQPDVRAAAVIACLEMGHAMLDKTVVLGTKLDIASRQLAAAIGVSKGKSR-----SSKVESLQHQVDSLKRTRADL---DEIVLGPVIQGVFIHRYRDSNMHIRAHCLDALSRMTIQRPDLFLNDKYLKYFGWMMSDKDECVRIASLKGLYAPFAAAKKGSKVDLSAMENVVNKFLPRMTECTLDVSIQVQEQAMALLLGNLREGFFDDVDDEKMWNQINICALAEDTSPTVRRDALYFVMEQLE 506          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A7N0ULZ7_KALFE (SCD domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ULZ7_KALFE)

HSP 1 Score: 85.5 bits (210), Expect = 5.240e-15
Identity = 58/240 (24.17%), Postives = 112/240 (46.67%), Query Frame = 1
Query:   10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDN 729
            F+ N ++ +  L + C   G   D+ + E +   ++AL+       R  A+L G+ L        + L A+    +RQL   K  +           +V  L  ++  I   + +L      ++  +   RYRD+   +R+  +  L    L+ P +++QD+ ++Y GW+L+DK   VR  ++ ++Q L + +D+   L  F+  F NR+  +  D+D +V+  A  ++  +LS   L N
Sbjct:  168 FKDNLVKFWDMLVKECSN-GPLFDSVLFEKITDYVIALSCTPPRVYRQVASLVGLSLVTSFVSVANVLGAQRETTQRQLNAEKKKRAEGP-------RVDSLNKRLSAIQPKINILEELVRKIFQGLFVHRYRDIDPNIRTTCIQSLGYWNLSYPSLFLQDRYLKYLGWTLNDKNAGVRKASVHALQNLYKVDDNIPSLSLFTERFSNRIIELADDIDISVAVSAIGLINQLLSNQLLSN 399          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: K0SBC6_THAOC (SCD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBC6_THAOC)

HSP 1 Score: 84.7 bits (208), Expect = 1.010e-14
Identity = 74/277 (26.71%), Postives = 127/277 (45.85%), Query Frame = 1
Query:   79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQ----KRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLA-------LQSIQRLLRHE-----DSSVRLDKFSGHFFNRVKAM--------LRDVDATVSREAAVVLRLMLSAGFLDNMEREDEMD-IEAGVFEEGLPLPARTECMGFFVDRLE 834
            DA+++  +I  L+ LT     DVR    LA   +   I +  S L  K+ VA+RQ   A  AK           K + L+ +V+ +  ++E L    ++V   + Q     RYRD +  +R+  L+ LS++ L  P++++ DK ++Y GW + DK   VR  A        ++I++   +E     DS + +DK      + V A         + DV   V   A  ++  +L+ GFLD  E ++  D + A       P   + + + F +D+LE
Sbjct:  361 DAELIRGLITRLLELTPVGQPDVRAGTCLAVFSMAHAILDQSSMLVKKMDVAQRQYEAA--AKARKSPKNRGGDKAESLKLRVDSLKRTIEDL---EEVVLGPVIQGLFVNRYRDSNEHIRAMCLESLSRMTLQRPDLFLNDKYLKYFGWMMHDKFAVVRKAAYFGILAPFEAIEKSKDNEVLAGYDSHLMVDKIDLSMLDNVVAKFIATMSDAVMDVSVDVQEVAMKLMLALLNNGFLDEHEGDEIWDKVNARALAADAPPTVQKDSLYFILDQLE 632          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A3Q3SNX4_9TELE (SCD domain-containing protein n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3SNX4_9TELE)

HSP 1 Score: 82.0 bits (201), Expect = 4.460e-14
Identity = 62/236 (26.27%), Postives = 118/236 (50.00%), Query Frame = 1
Query:   10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAG 717
            F++   E  Q L   CR +   +D  +  +++ LL  L+ +     R  +TL  ++L  G+ +    L  +L   +RQ    KS KG        S K++ L+  ++ +  + E L++  +  +  +   RYRD  + +R+A ++ L   +   PE ++ DK ++Y GW+L DK   VR+  ++++Q L + ++   RL+ F+  F  R+ +M+ D D  V+ E   +L L+   G
Sbjct:  120 FKAGLSEFAQVLVYCCRNSL-IYDEYLFPSLLSLLTGLSDSQVRAFRHTSTLLAVKLMTGLVDVAVTLSVQLQTTQRQCDMEKS-KGIHDRA---SDKLEKLQATIKELQENREELSSLMNATFRGVFVHRYRDRLSEIRAACIEELGMWLKTDPEDFLNDKCLKYLGWTLHDKQSPVRLQCVRALQGLYQEKEFIGRLELFTSRFKERMLSMVLDKDPDVAVEIVKLLLLIQQCG 350          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A2P6NU25_9EUKA (Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NU25_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 4.960e-14
Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRL 702
            D   L+++   + A + A++   R  AT+A M++   + + +++   K   A  +    +  KG        S+K++ L  +  R+  + + L  A +++Y     K YRD    +R   ++ L + + + PE Y+ DKL++Y GW+LSDK   VR+LAL+ ++RL    + +  L+ F   F NR+  M+ D +  V  EA  V+ L
Sbjct:  213 DGHFLDSISSWISAFSNALARPFRHTATMAAMEVNSALIKVINERINKDISALDRSISTERRKGASSG----SQKMKDLTKKKNRLEQNKQQLQEAMNVLY-----KGYRDTVPKIRCTCVEALGRWINSYPEFYLDDKLLKYIGWALSDKDARVRILALKVVERLYAQPELADTLEIFISTFENRLIQMVADNEIDVGVEALKVVTL 411          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: UPI0009E39DA2 (sister-chromatid cohesion protein 3-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E39DA2)

HSP 1 Score: 82.4 bits (202), Expect = 5.310e-14
Identity = 62/242 (25.62%), Postives = 114/242 (47.11%), Query Frame = 1
Query:   10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNME 735
            F+ N    +  L   C+  G   D  + +  +  ++AL+       R  ATL G+QL   +  +   L  +    +RQL   K  +           +V  L  ++ +    + V+      ++  +   RYRDV + +R + +  L   +L+ P +++QD  ++Y GW+L+DKV AVR  ++ S+Q L   +D+   L  F+  F NR+  +  D+D +V+  A  +L+L+L    L + E
Sbjct:   93 FKENLALFWDTLVLECQN-GPLFDNILFDKCMDYVIALSCTPPRIYRHVATLVGLQLVTSLIAAAKILAGQRETTQRQLNAEKKKRSDGP-------RVDSLNKRLTQTHKVISVIEEMMRKLFQGLFMHRYRDVDSDIRVSCIRSLGVWILSYPSLFLQDLYLKYLGWTLNDKVAAVRKTSVLSLQNLYEVDDNVPSLGLFTERFCNRMIELADDIDISVAVSAIGLLKLLLRHQLLTDEE 326          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: A0A2P6MXW1_9EUKA (Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MXW1_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.410e-13
Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   79 DADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRL 702
            D   L+++   + A + A++   R  AT+A M++   + + +++   K   A  +    +  KG        S+K++ L  +  R+  + + L  A +++Y     K YRD    +R   ++ L + + + PE Y+ DKL++Y GW+LSDK   VR+LAL+ ++RL    + +  L+ F   F NR+  M+ D +  V  EA  V+ L
Sbjct:  142 DGYFLDSISSWISAFSNALARPFRHTATMAAMEVNSALIKVINERINKDISALDRSISTERRKGASSG----SQKMKDLTKKKNRLEQNKQQLQEAMNVLY-----KGYRDTVPEIRCTCVEALGRWINSYPEFYLDDKLLKYIGWALSDKDARVRILALKVVERLYAQPELADTLEIFISTFENRLIQMVADNEIDVGVEALKVVTL 340          
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Match: UPI000E45E6CA (cohesin subunit SA-2-like n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E45E6CA)

HSP 1 Score: 80.5 bits (197), Expect = 2.610e-13
Identity = 61/232 (26.29%), Postives = 117/232 (50.43%), Query Frame = 1
Query:   10 FRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVRLAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGXXXXXXXXSRKVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGLSKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSVRLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLM 705
            F++   E  Q L   CR +   +D  +  +++ LL  L+ +     R  +TL  ++L  G+ +    L  +L   +RQ    KS KG        S K++ L+  ++ +  + E L++  +  +  +   RYRD  + +R+A ++ L   +   PE ++ DK ++Y GW+L DK   VR+  ++++Q L + ++   RL+ F+  F  R+ +M+ D D  V+ E   +L L+
Sbjct:  184 FKAGLSEFAQVLVYCCRNSL-IYDEYLFPSLLSLLTGLSDSQVRAFRHTSTLLAVKLMTGLVDVAVTLSVQLQTTQRQCDMEKS-KGIHDRA---SDKLEKLQATIKELQENREELSSLMNATFRGVFVHRYRDRLSEIRAACIEELGMWLKTDPEDFLNDKCLKYLGWTLHDKQSPVRLQCVRALQGLYQEKEFIGRLELFTSRFKERMLSMVLDKDPDVAVEIVKLLLLI 410          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10373.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R2_ECTSI2.860e-12070.11Sister chromatid cohesion complex Cohesin, subunit... [more]
A0A6H5J7R4_9PHAE7.980e-10468.91SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2USW8_9STRA9.550e-1626.89Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7N0ULZ7_KALFE5.240e-1524.17SCD domain-containing protein n=2 Tax=Kalanchoe fe... [more]
K0SBC6_THAOC1.010e-1426.71SCD domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A3Q3SNX4_9TELE4.460e-1426.27SCD domain-containing protein n=1 Tax=Mastacembelu... [more]
A0A2P6NU25_9EUKA4.960e-1427.88Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fun... [more]
UPI0009E39DA25.310e-1425.62sister-chromatid cohesion protein 3-like n=1 Tax=P... [more]
A0A2P6MXW1_9EUKA1.410e-1327.88Cohesin subunit SA-1 n=1 Tax=Planoprotostelium fun... [more]
UPI000E45E6CA2.610e-1326.29cohesin subunit SA-2-like n=1 Tax=Mastacembelus ar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10373contigS-firma_F_contig10373:1770..4937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G0R2
Preferred nameIRR1
PFAMsSTAG
Max annot lvl2759|Eukaryota
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
Evalue4.68e-121
EggNOG OGsCOG5537@1|root,KOG2011@2759|Eukaryota
Descriptionchromosome segregation
COG categoryD
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.6355133-CDS-S-firma_F_contig10373:1769..19261622815569.6355133-CDS-S-firma_F_contig10373:1769..1926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 1770..1926 -
1696949423.0808868-CDS-S-firma_F_contig10373:1769..19261696949423.0808868-CDS-S-firma_F_contig10373:1769..1926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 1770..1926 -
1622815569.6502042-CDS-S-firma_F_contig10373:2490..26061622815569.6502042-CDS-S-firma_F_contig10373:2490..2606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 2491..2606 -
1696949423.1222582-CDS-S-firma_F_contig10373:2490..26061696949423.1222582-CDS-S-firma_F_contig10373:2490..2606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 2491..2606 -
1622815569.6649756-CDS-S-firma_F_contig10373:3077..31491622815569.6649756-CDS-S-firma_F_contig10373:3077..3149Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3078..3149 -
1696949423.1314406-CDS-S-firma_F_contig10373:3077..31491696949423.1314406-CDS-S-firma_F_contig10373:3077..3149Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3078..3149 -
1622815569.6790159-CDS-S-firma_F_contig10373:3531..36451622815569.6790159-CDS-S-firma_F_contig10373:3531..3645Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3532..3645 -
1696949423.140778-CDS-S-firma_F_contig10373:3531..36451696949423.140778-CDS-S-firma_F_contig10373:3531..3645Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3532..3645 -
1622815569.69098-CDS-S-firma_F_contig10373:3937..39881622815569.69098-CDS-S-firma_F_contig10373:3937..3988Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3938..3988 -
1696949423.1507425-CDS-S-firma_F_contig10373:3937..39881696949423.1507425-CDS-S-firma_F_contig10373:3937..3988Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 3938..3988 -
1622815569.7005587-CDS-S-firma_F_contig10373:4419..45661622815569.7005587-CDS-S-firma_F_contig10373:4419..4566Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 4420..4566 -
1696949423.161149-CDS-S-firma_F_contig10373:4419..45661696949423.161149-CDS-S-firma_F_contig10373:4419..4566Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 4420..4566 -
1622815569.7109885-CDS-S-firma_F_contig10373:4760..49371622815569.7109885-CDS-S-firma_F_contig10373:4760..4937Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 4761..4937 -
1696949423.1714432-CDS-S-firma_F_contig10373:4760..49371696949423.1714432-CDS-S-firma_F_contig10373:4760..4937Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10373 4761..4937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10373.534.1prot_S-firma_F_contig10373.534.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10373 1770..4937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10373.534.1

>prot_S-firma_F_contig10373.534.1 ID=prot_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=278bp
ARIFRSNYLEVFQRLAEACRGAGGDHDADILEAVILLLVALTQAISADVR
LAATLAGMQLGLGIAESLSDLYAKLAVAERQLAGAKSAKGGGKKAAEKSR
KVQGLEGQVERISSSVEVLTAASDLVYAKITQKRYRDVSAVVRSAALDGL
SKIMLALPEIYVQDKLMRYHGWSLSDKVPAVRVLALQSIQRLLRHEDSSV
RLDKFSGHFFNRVKAMLRDVDATVSREAAVVLRLMLSAGFLDNMEREDEM
DIEAGVFEEGLPLPARTECMGFFVDRLE
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mRNA from alignment at S-firma_F_contig10373:1770..4937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10373.534.1 ID=mRNA_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3168bp|location=Sequence derived from alignment at S-firma_F_contig10373:1770..4937- (Sphaerotrichia firma ET2_F female)
GCGAGGATCTTCCGATCCAACTACCTGGAGGTGTTCCAAAGGCTGGCGGA GGCGTGCCGCGGGGCGGGCGGCGATCACGACGCGGACATCCTCGAGGCCG TGATCCTGCTGCTGGTGGCCCTCACGCAAGCGATCTCGGCGGACGTTCGC CTGGCCGCCACGCTGGCCGGCATGCAGGTGTTTATGATACGACACAGCAA ACCCAGCCTTACGGCACGGCCTGGGCGCTAACCTGTTTTTTGAGGGGGGT GGTGTGCTGTTTGTTGGTTTGCGCTTTGCGTTTGGTTTGGAGCTTTCGAG TTTTCTCTCAATCGTTTTGCTTTCTCGTGGGTCTTTCTATCTCCCCCCTC CCCCTTCTTCCATCTCGCCAGCTGGGGCTCGGCATCGCGGAGAGCCTGAG TGACCTCTACGCGAAGCTCGCGGTCGCTGAGAGGCAGCTTGCCGGGGCCA AGTCGGCGAAAGGAGGGGGCAAGAAGGCCGCAGAAAAGTCCAGGAAAGTT CAGGGGCTCGAGGGCCAGGTAAGTGGTGCGGTGTCATACTGTAACTTCCA ATCTCCGCACCTGCATCTTTCGTTGGCCCTCGTGGTGGTTTGGCGCGAGG GGGGGGCAGGGTGTCTTCGTTTTACCTTGGGAAGGTAGTTAGCGGCTTGG ACAATGTGTCGACTCCTCGTGAAGTATATACGTCAAGATTTGGGTGTCAC GCCTCTCAATGACGTGGATGATACGCCCAGCACAAGGTCAGCAGTCAATA CTCTGCGCGTGTGCCTTGACGGGACTTGCTCCAGTGCCATGGGTGGTTTT CTCTCGCGGCAGCGTTGTCATGTCCTTCTAGATATCAAACGACTTGTCGA TCTTTCTGTGTTCCCAACAGAAACACATCCCAGTTTCGGCCGAGTTCCAA CGCTTTTGTCGACCCTACCACACCCCAAACTCAACAATATCAAATCAAGG TGGAGCGCATCTCTAGCTCGGTGGAGGTGCTGACGGCGGCGTCTGACCTG GTGAGTGTCCCGTCATTGCTCTGCCGCCCAGGGCTAACGTGGGAAACAGG AGAATGGTAAAACGCTCCGAAACATGCAGAGATAGCATACAGGTTGCAAT GATCTGCACGGCGTGGTATAGCATCGCCTACTTGCTTAACGTTTTTGTTG GTGCTGGTGCTGTTGGTGCTGCTGGTGCCGGTGCTGATGATGATATTCGC CTTACCGTACCCCCAAGGGTGGTTTGGTTGGTCGAAGTTTGCTTCAACGA ACGAGTTTTTTTTATGTTGCGTGCCTGCCACTCGCCACGCAGGTCTACGC CAAGATCACGCAGAAGAGGTACCGCGACGTGTCCGCGGTCGTCCGCTCCG CTGCCCTGGACGGTCTGAGCAAGATCATGCTCGCCCTCCCCGAGATTTAC GTGCAGGTAAATCTACGTCGGTGATGGGCGTGTTGCTGTAGGTTGCTGTT TCCCCCAAGAACTGAAAGCGCATCTAAATCTTTGCAGCCAACCACACCCT CGATGACAACTGCTGAATATCTCACGGCAGTACGCCGCTTGATGCGTGAG CTTTCCAAGACCTGACAAGCTCCGTTTGTTTCGTTGACGCATTGTGTGGT ACAGCAGCAGGTCGATTTTTAAGATGACGAAAGCAAGCAAGCAACAAAAT AAGGATGCACGCCCCAAATTTCTTGATTCACTGTCTTTTTATATATATAT ACGAGTATTATTTTTCCTTTTGTTTTGCTCCAACGCTTTCCTTTGTTTTT TTGCTCGTCGTTTGCTCTGTCGCTTCTTTTGTTCCCAGGACAAGCTCATG AGGTACCACGGGTGGAGCCTGAGCGACAAGGTACCCGCCGTCAGGGTGCT CGCTCTGCAGGTATTTCTTCGTTCATTTCTTGGGTTTTTTCTAACCCTCC GACGTACTCTTGTGCGATGATATCGCCCTTTGTCGTTTACTGCTGTACGA CAAGACTGAACAATCCATGTTAGTGTTTCCCCACCACAAGGAGCCTGCCT GCATGCCCCCTTTGGTTGGGATGGGATGTCGTTCACTAGTGAGATCTGAA CTGCAATTTGTGATTGCGGCGTGTATGTGGCCCATCCATCGATGCACGAG ACGCTGCTGGTGCTGTGTTCTTTCGCGCGTTCACGGTGTGCGGTATGTGC TCCACCATGTTAGCGTCACGAATTCGCATACGAAGCAGGGCGTCATCAGA CCGAACTGCGTTTAATTAATTCCCTTACGACGAGCACCGCGTCTCGTGAT CTGCTGTGCGCCCCCCCTGACGCTTTTTCTCTCCCGTCTTGTTATTTGCG TGTCAACTTTCCTGCCTTGTGCGTTCTGCAGTCGATCCAGCGTCTGCTGA GACACGAAGATTCATCGGTGAGGCTCGACAAGTTCTCCGGTCATTTTTTC AACAGGGTCAAGGCCATGCTCCGCGACGTCGACGCCACGGTCAGCAGGTG AAACTGAAACTGAAACTAGTAGTTTGGGGCGGGAAATTGGCGTAATGATG TGTCAATCAGACGTTGTTCTTGTTGTTGTCGTTGTTGTGTGTTTGCTTAC GAACTCAGAAAATATTTCAGACCTCGACGACCACCCCCTTCTCCGACTCG CTAGTGTGGGCCAAATTTACGTGCGAATTTGGTTCGTGGTGACCTATCCT GAGAAGCAGGCTAAAAGTTTGGAACGTTGTATCATATGATATGAGATTGT GACGCGGTGTTGTTTTTCTATTGCTCTATATGTAAGGTTGGGATCAATGA AATGAGGCCTCTCTGCTACGGCATGTCATCCCTGTCCCAGCGTCGATGTT TTTGTTTCATGCCGTTCCTGCGACTTGTCTGTGTTCCTTTCTCTTCCGTT TCACCCCCAGAGACTTCCACACCATGTATTTACCTGCTACACCTACCACC TATTTTTCCATTTCACCAAGCTTCACAATAGCTCGTGCACTCACCACGCA ATGGTGGGTCTCTTTTTTGTTGTACCTGCCGTTTCTGTTTTCTCTCTTCG GCTGGGCGAAGGGAGGCTGCCGTGGTGCTGAGGCTGATGCTGTCTGCGGG GTTCCTGGACAACATGGAGAGGGAGGACGAGATGGACATCGAGGCCGGCG TCTTCGAGGAGGGGCTGCCGCTGCCGGCGAGGACGGAGTGCATGGGCTTC TTCGTCGATCGCCTCGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10373:1770..4937-

>mRNA_S-firma_F_contig10373.534.1 ID=mRNA_S-firma_F_contig10373.534.1|Name=mRNA_S-firma_F_contig10373.534.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1668bp|location=Sequence derived from alignment at S-firma_F_contig10373:1770..4937- (Sphaerotrichia firma ET2_F female)
GCGAGGATCTTCCGATCCAACTACCTGGAGGTGTTCCAAAGGCTGGCGGA
GGCGTGCCGCGGGGCGGGCGGCGATCACGACGCGGACATCCTCGAGGCCG
TGATCCTGCTGCTGGTGGCCCTCACGCAAGCGATCTCGGCGGACGTTCGC
CTGGCCGCCACGCTGGCCGGCATGCAGGCGAGGATCTTCCGATCCAACTA
CCTGGAGGTGTTCCAAAGGCTGGCGGAGGCGTGCCGCGGGGCGGGCGGCG
ATCACGACGCGGACATCCTCGAGGCCGTGATCCTGCTGCTGGTGGCCCTC
ACGCAAGCGATCTCGGCGGACGTTCGCCTGGCCGCCACGCTGGCCGGCAT
GCAGCTGGGGCTCGGCATCGCGGAGAGCCTGAGTGACCTCTACGCGAAGC
TCGCGGTCGCTGAGAGGCAGCTTGCCGGGGCCAAGTCGGCGAAAGGAGGG
GGCAAGAAGGCCGCAGAAAAGTCCAGGAAAGTTCAGGGGCTCGAGGGCCA
GCTGGGGCTCGGCATCGCGGAGAGCCTGAGTGACCTCTACGCGAAGCTCG
CGGTCGCTGAGAGGCAGCTTGCCGGGGCCAAGTCGGCGAAAGGAGGGGGC
AAGAAGGCCGCAGAAAAGTCCAGGAAAGTTCAGGGGCTCGAGGGCCAGGT
GGAGCGCATCTCTAGCTCGGTGGAGGTGCTGACGGCGGCGTCTGACCTGG
TGGAGCGCATCTCTAGCTCGGTGGAGGTGCTGACGGCGGCGTCTGACCTG
GTCTACGCCAAGATCACGCAGAAGAGGTACCGCGACGTGTCCGCGGTCGT
CCGCTCCGCTGCCCTGGACGGTCTGAGCAAGATCATGCTCGCCCTCCCCG
AGATTTACGTGCAGGTCTACGCCAAGATCACGCAGAAGAGGTACCGCGAC
GTGTCCGCGGTCGTCCGCTCCGCTGCCCTGGACGGTCTGAGCAAGATCAT
GCTCGCCCTCCCCGAGATTTACGTGCAGGACAAGCTCATGAGGTACCACG
GGTGGAGCCTGAGCGACAAGGTACCCGCCGTCAGGGTGCTCGCTCTGCAG
GACAAGCTCATGAGGTACCACGGGTGGAGCCTGAGCGACAAGGTACCCGC
CGTCAGGGTGCTCGCTCTGCAGTCGATCCAGCGTCTGCTGAGACACGAAG
ATTCATCGGTGAGGCTCGACAAGTTCTCCGGTCATTTTTTCAACAGGGTC
AAGGCCATGCTCCGCGACGTCGACGCCACGGTCAGCAGTCGATCCAGCGT
CTGCTGAGACACGAAGATTCATCGGTGAGGCTCGACAAGTTCTCCGGTCA
TTTTTTCAACAGGGTCAAGGCCATGCTCCGCGACGTCGACGCCACGGTCA
GCAGGGAGGCTGCCGTGGTGCTGAGGCTGATGCTGTCTGCGGGGTTCCTG
GACAACATGGAGAGGGAGGACGAGATGGACATCGAGGCCGGCGTCTTCGA
GGAGGGGCTGCCGCTGCCGGCGAGGACGGAGTGCATGGGCTTCTTCGTCG
ATCGCCTCGAGGGAGGCTGCCGTGGTGCTGAGGCTGATGCTGTCTGCGGG
GTTCCTGGACAACATGGAGAGGGAGGACGAGATGGACATCGAGGCCGGCG
TCTTCGAGGAGGGGCTGCCGCTGCCGGCGAGGACGGAGTGCATGGGCTTC
TTCGTCGATCGCCTCGAG
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