mRNA_S-firma_F_contig1037.526.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1037.526.1 vs. uniprot
Match: D8LRG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG2_ECTSI) HSP 1 Score: 676 bits (1745), Expect = 1.620e-234 Identity = 332/386 (86.01%), Postives = 355/386 (91.97%), Query Frame = 1
Query: 1 MQSFATRLLAPGR--NSGWFILENQMREKVVTNRISPSCRYYNRPGVDSYKPLDSEFPRCLKGFKWDMEKLVAKLKVKLIEHAKGIAGYQFLAACKLFRDEVAPGQRKGGRISAADFRRVVEYKFGMKLDPDEVLNLFHFFVPGTGDSVEIAAMVRVLEPDDYTDSWFSTRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIEDKIREKIHERVGGTNLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSQKDVDDVFRKYDPKGTGKLDVHSFVKRLVSPAADNINWFRDKDTYEFHVLNRAPMKKDPMKAECWKATNWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLIRSANPDHLDSSNMDREALKFVVFRR 1152
MQSFATRLLAP R ++GWF L+NQMREKVVTNRISPS RY+NRPGV+SYKPLD+ FP+CLKGFKWDM KLVAKLKVKL E AKGIAGYQFLAACKLFR EV+ RKG RISA DFR VVEYKFGMKLD DEVL+LFH+ VPGTGDS++I++MVRVLEPDDYTDSWF+TRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIE KIREKI+ERVGGT+LFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLS KDVDDVFRKYDPKGTGKLDVHSFV RL+SP A+ WF +KDTYEFHVLNRAPMKKDPMKAE W+ T WTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNL+RSANPDHLDSS MDREA KFV+FRR
Sbjct: 1 MQSFATRLLAPDRAGSNGWFFLDNQMREKVVTNRISPSSRYHNRPGVESYKPLDNVFPQCLKGFKWDMGKLVAKLKVKLREQAKGIAGYQFLAACKLFRSEVS-SNRKGDRISAEDFRGVVEYKFGMKLDHDEVLSLFHYLVPGTGDSIDISSMVRVLEPDDYTDSWFNTRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIEGKIREKIYERVGGTSLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSSKDVDDVFRKYDPKGTGKLDVHSFVVRLISPTAEPEPWFGNKDTYEFHVLNRAPMKKDPMKAESWQRTKWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLLRSANPDHLDSSYMDREAFKFVIFRR 385
BLAST of mRNA_S-firma_F_contig1037.526.1 vs. uniprot
Match: A0A835YQE8_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE8_9STRA) HSP 1 Score: 379 bits (974), Expect = 4.950e-119 Identity = 203/406 (50.00%), Postives = 266/406 (65.52%), Query Frame = 1
Query: 1 MQSFATRLLAPGRNSGWFILENQMRE---KVVTNRISPSCRYYNRPGVDSYKPL--DSEFPRCLKGFKWDMEKLVAKLKVKLIEHAKGIAGYQFLAACKLFRDEVAPGQRKGGRISAADFRRVVEYKFGMKLDPD----------------EVLNLFHFFVPGTGDSVEIAAMVRVLEPDDYTD-SWFSTRESTDMFGFTKPGPEKVVLQAKKMNVGGSWNLKLIEDKIREKIHERVGGT-NLFEVQAAYTLFQDGRNTGLTKKGFQAQMHDKFAVVLSQKDVDDVFRKYDPKGTGKLDVHSFVKRLVSPAADNINWFRDKDTYEFHVLNRAPMKKDPMKAECWKATNWTFRQFETTLRDKLLAKSNQDGGRFAFKSAVNLIRSANPDHLDSSNMDREALKFVVFR 1149
++S RLL P GWF+L Q+R K RIS S R+ + PGV + P+ + EFP L+GFKWD+ KLV KLK K+ EHA+G AGY FLAACK+FR E+ +RKG I+A +FR VV KF + D E ++LF PG G S+ I +VR L P DY + SWFSTR+STDM G+ P+KVVLQA++MN +W + ++EDKIREK+HER GGT NL++VQA Y LF DGRN G+T++ F+A +HDKFA++L+ +VD +FR++DP+ TG+LD++ FV RLV A WF+ +++Y+F RAP K+D M A WK T W+ E L K+ AKSNQDGGRFAFKSAVNL+RSANPDHLD ++ R A K VVFR
Sbjct: 145 VRSMVRRLLQPAPEDGWFMLSAQLRADACKEAETRISESARFKHTPGVVAQDPVPTNEEFPASLRGFKWDVNKLVQKLKCKINEHAQGHAGYLFLAACKIFRHELP--ERKGDMITAREFRDVVRAKFSLVCDEQGVTAAHXXXXXXXXXXECIDLFEMLEPGCGGSMPITELVRRLVPRDYIERSWFSTRDSTDMPGYEHGKPDKVVLQAQEMNKH-NWTVDILEDKIREKLHERSGGTGNLYQVQATYRLFLDGRNNGVTRERFKAHLHDKFAILLTDDEVDALFRRHDPENTGQLDLYKFVMRLVGVQAPPEPWFQGRESYDFRCGRRAPHKEDLMGAPEWKRTKWSLHHLEQELIKKMWAKSNQDGGRFAFKSAVNLLRSANPDHLDRTSFTRAAAKMVVFR 547 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1037.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1037.526.1 >prot_S-firma_F_contig1037.526.1 ID=prot_S-firma_F_contig1037.526.1|Name=mRNA_S-firma_F_contig1037.526.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=385bp MQSFATRLLAPGRNSGWFILENQMREKVVTNRISPSCRYYNRPGVDSYKPback to top mRNA from alignment at S-firma_F_contig1037:7228..11755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1037.526.1 ID=mRNA_S-firma_F_contig1037.526.1|Name=mRNA_S-firma_F_contig1037.526.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4528bp|location=Sequence derived from alignment at S-firma_F_contig1037:7228..11755+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1037:7228..11755+ >mRNA_S-firma_F_contig1037.526.1 ID=mRNA_S-firma_F_contig1037.526.1|Name=mRNA_S-firma_F_contig1037.526.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2310bp|location=Sequence derived from alignment at S-firma_F_contig1037:7228..11755+ (Sphaerotrichia firma ET2_F female)back to top |