mRNA_S-firma_F_contig1037.524.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1037.524.1
Unique NamemRNA_S-firma_F_contig1037.524.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1037.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1037contigS-firma_F_contig1037:3232..4482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size605
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1037.524.1prot_S-firma_F_contig1037.524.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1037 3233..4482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.7913384-CDS-S-firma_F_contig1037:3232..36031622815568.7913384-CDS-S-firma_F_contig1037:3232..3603Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 3233..3603 -
1696949422.3677278-CDS-S-firma_F_contig1037:3232..36031696949422.3677278-CDS-S-firma_F_contig1037:3232..3603Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 3233..3603 -
1622815568.8027217-CDS-S-firma_F_contig1037:3843..39341622815568.8027217-CDS-S-firma_F_contig1037:3843..3934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 3844..3934 -
1696949422.3998697-CDS-S-firma_F_contig1037:3843..39341696949422.3998697-CDS-S-firma_F_contig1037:3843..3934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 3844..3934 -
1622815568.8134856-CDS-S-firma_F_contig1037:4341..44821622815568.8134856-CDS-S-firma_F_contig1037:4341..4482Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 4342..4482 -
1696949422.4157116-CDS-S-firma_F_contig1037:4341..44821696949422.4157116-CDS-S-firma_F_contig1037:4341..4482Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1037 4342..4482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1037.524.1

>prot_S-firma_F_contig1037.524.1 ID=prot_S-firma_F_contig1037.524.1|Name=mRNA_S-firma_F_contig1037.524.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=201bp
VATQPKKGEGVDGSSRTKHVGYAKRHVLRRSRQECSPKRAQHRAQLQAAS
VTSYLPRAPESEPQIQPEISNRQETMAASGRHGGDRRSQGHFTAFADEDD
EQVQTPPRWRRISAATPGAPQQEYSTSPSIRRQQGNGRHQRHNNLPQRDE
GGGRTSARGVDAEYSPKRHPGGVSGHGGDRRAAREPDWGGECGDHPNQPK
G
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mRNA from alignment at S-firma_F_contig1037:3232..4482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1037.524.1 ID=mRNA_S-firma_F_contig1037.524.1|Name=mRNA_S-firma_F_contig1037.524.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1251bp|location=Sequence derived from alignment at S-firma_F_contig1037:3232..4482- (Sphaerotrichia firma ET2_F female)
GTTGCAACGCAACCGAAGAAAGGAGAAGGAGTAGACGGATCTTCTAGGAC
AAAACATGTTGGATACGCGAAACGGCATGTTCTACGGCGTAGCAGGCAGG
AATGTTCCCCCAAGCGAGCCCAACATAGGGCGCAGCTGCAGGTGATATAG
CTTCTTGGGCGCGTGGAAGCGATCCAAGGCAACGATAAAACCCTACCACT
AAACTGCAGCGGGAATGCCCCAAACTTCAGAAGAGAAAATTCTGCATATT
ATACTCTCACAGCGCTCACACTCTGGCGATTCGAGTGGAAATAACAAATA
GCAAGGAGACTTGTACGTACAAAATATTGACCAGCAGTGCTCATATTGTC
AGGCAGTGGGTTGGCGCGATAGAAAACCAGCCAGCTGTAGGATCAGAGCA
AGAAACCCAAAAGTGCTCGTTAACCATCTTACCGTCGCTCTGTTTGGTTG
CACGAAACAATGACAGATCAGCCTCGAAAGCAACACGTTCTGTGCAAGCA
ATAATCGACCCCATTTTCCGTCAATTTTACCGCCCTCGGACCGAACAGGC
TGCCTCGGTCACATCGTACCTTCCCCGCGCGCCTGAAAGCGAACCGCAAA
TCCAACCGGAGATCTCAAATAGGCAGGAAACCATGGCAGGCGAGGAGTAG
TGGTATTCTTCAAGGGACGCTTGCGTGGGTGAAAACTTAGGCTTGCACGT
GCCCGTGGGGCCGCACCAACCAGTTCGACGGCGTACAGAACACCGCCGCT
CTCGCAGGGGCTCGTGTCATGGGTTGCATGCAAAGAAACGCGTGAGCGCT
TCCATCGAGTAGAAATAGAAAAGTTGCAGAGTCTCAAACTGTCCTTCAAT
CCCTCGCCCCCGCTACTCCGCCGGCGCAGCCTCCGGCCGGCACGGCGGTG
ACCGCAGGTCCCAGGGTCACTTCACAGCATTTGCCGATGAAGATGATGAG
CAGGTGCAGACGCCGCCTCGGTGGCGGCGAATAAGCGCGGCAACCCCCGG
CGCACCACAGCAAGAGTACTCCACAAGCCCATCGATACGCCGACAACAAG
GAAACGGCCGCCACCAGCGGCACAACAACCTCCCGCAGCGTGACGAAGGG
GGCGGCAGAACTTCTGCAAGGGGTGTAGATGCGGAGTATTCCCCGAAGAG
GCACCCCGGCGGCGTGTCCGGACACGGTGGCGATCGACGCGCGGCTCGAG
AGCCGGACTGGGGTGGCGAGTGTGGAGACCACCCGAATCAACCGAAGGGG
G
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Coding sequence (CDS) from alignment at S-firma_F_contig1037:3232..4482-

>mRNA_S-firma_F_contig1037.524.1 ID=mRNA_S-firma_F_contig1037.524.1|Name=mRNA_S-firma_F_contig1037.524.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1206bp|location=Sequence derived from alignment at S-firma_F_contig1037:3232..4482- (Sphaerotrichia firma ET2_F female)
GTTGCAACGCAACCGAAGAAAGGAGAAGGAGTAGACGGATCTTCTAGGAC
AAAACATGTTGGATACGCGAAACGGCATGTTCTACGGCGTAGCAGGCAGG
AATGTTCCCCCAAGCGAGCCCAACATAGGGCGCAGCTGCAGGTTGCAACG
CAACCGAAGAAAGGAGAAGGAGTAGACGGATCTTCTAGGACAAAACATGT
TGGATACGCGAAACGGCATGTTCTACGGCGTAGCAGGCAGGAATGTTCCC
CCAAGCGAGCCCAACATAGGGCGCAGCTGCAGGCTGCCTCGGTCACATCG
TACCTTCCCCGCGCGCCTGAAAGCGAACCGCAAATCCAACCGGAGATCTC
AAATAGGCAGGAAACCATGGCAGGCTGCCTCGGTCACATCGTACCTTCCC
CGCGCGCCTGAAAGCGAACCGCAAATCCAACCGGAGATCTCAAATAGGCA
GGAAACCATGGCAGCCTCCGGCCGGCACGGCGGTGACCGCAGGTCCCAGG
GTCACTTCACAGCATTTGCCGATGAAGATGATGAGCAGGTGCAGACGCCG
CCTCGGTGGCGGCGAATAAGCGCGGCAACCCCCGGCGCACCACAGCAAGA
GTACTCCACAAGCCCATCGATACGCCGACAACAAGGAAACGGCCGCCACC
AGCGGCACAACAACCTCCCGCAGCGTGACGAAGGGGGCGGCAGAACTTCT
GCAAGGGGTGTAGATGCGGAGTATTCCCCGAAGAGGCACCCCGGCGGCGT
GTCCGGACACGGTGGCGATCGACGCGCGGCTCGAGAGCCGGACTGGGGTG
GCGAGTGTGGAGACCACCCGAATCAACCGAAGGGGCCTCCGGCCGGCACG
GCGGTGACCGCAGGTCCCAGGGTCACTTCACAGCATTTGCCGATGAAGAT
GATGAGCAGGTGCAGACGCCGCCTCGGTGGCGGCGAATAAGCGCGGCAAC
CCCCGGCGCACCACAGCAAGAGTACTCCACAAGCCCATCGATACGCCGAC
AACAAGGAAACGGCCGCCACCAGCGGCACAACAACCTCCCGCAGCGTGAC
GAAGGGGGCGGCAGAACTTCTGCAAGGGGTGTAGATGCGGAGTATTCCCC
GAAGAGGCACCCCGGCGGCGTGTCCGGACACGGTGGCGATCGACGCGCGG
CTCGAGAGCCGGACTGGGGTGGCGAGTGTGGAGACCACCCGAATCAACCG
AAGGGG
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