mRNA_S-firma_F_contig10357.507.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10357.507.1
Unique NamemRNA_S-firma_F_contig10357.507.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: D7G5G8_ECTSI (SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.840e-30
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 2 
Query:   86 VRGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            VRGLNR+AYAFLVGTKYDLYT+MPAEE+RDIDKQARKFAKAMHAPLIFTSASHSINVQK
Sbjct:  113 VRGLNRSAYAFLVGTKYDLYTSMPAEEQRDIDKQARKFAKAMHAPLIFTSASHSINVQK 171
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A835YI98_9STRA (SPG1, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI98_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.470e-25
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 2 
Query:   86 VRGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            VRGLNRNA+AFLVGTKYD++ T+P EE++DIDK ARKFA AMHAPLIFTSASHSINVQK
Sbjct:  113 VRGLNRNAHAFLVGTKYDIFATLPTEEQQDIDKMARKFAAAMHAPLIFTSASHSINVQK 171
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A6V1K250_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K250_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 8.850e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 2 
Query:   89 RGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            RGLNRNA+AFLVGTKYD++TT+  EE+ +IDKQARKFAKAM APL+FTS+ HSINVQK
Sbjct:  112 RGLNRNAHAFLVGTKYDIFTTLSPEEQAEIDKQARKFAKAMKAPLVFTSSPHSINVQK 169
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A7S2UXX0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.480e-23
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 2 
Query:   86 VRGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            VR LNRNA+  LVGTKYD++TT+P EE++DIDKQARKFA+AM APLIFTS+ HSIN+QK
Sbjct:  112 VRALNRNAHTLLVGTKYDIFTTLPPEEQQDIDKQARKFARAMKAPLIFTSSQHSINIQK 170
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A6U3ZUB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZUB0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.130e-21
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 2 
Query:   89 RGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            RGLNR A +FLVGTKYD++  MP E + DIDKQARKFAKAM APL+FTSA+HSINVQK
Sbjct:  119 RGLNRQAVSFLVGTKYDVFAAMPQEHQEDIDKQARKFAKAMKAPLVFTSATHSINVQK 176
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A7S3H350_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H350_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.960e-21
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:   89 RGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            RGLNR A AFLVGTK+D++TT+P EE  +IDK ARK+AKAM APL+F+SASHSINVQK
Sbjct:   43 RGLNRTAQAFLVGTKFDIFTTLPPEEIDEIDKLARKYAKAMKAPLVFSSASHSINVQK 100
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A2R5G3V5_9STRA (Septum-promoting GTP-binding protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3V5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.340e-21
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:   62 AARRSVSMVRGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            + R     VRGLN+ A+AFL+GTKYD++ T+P EE+++I KQARK+A+AM APLIF+SASHSINVQK
Sbjct:  151 SVREWYRQVRGLNKQAFAFLIGTKYDVFATLPHEEQKEITKQARKYARAMKAPLIFSSASHSINVQK 217
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A7S2CL26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL26_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.700e-20
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 2 
Query:   89 RGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            RGLNR A AFLVGTKYD++TT+  E + D+ KQARKFAKAM APL+FTSA+HS+NVQK
Sbjct:  139 RGLNRPAVAFLVGTKYDVFTTLSVEHQEDVTKQARKFAKAMKAPLVFTSATHSVNVQK 196
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: F0YJU8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJU8_AURAN)

HSP 1 Score: 87.8 bits (216), Expect = 1.150e-19
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:   86 VRGLNRNAYAFLVGTKYDLYTTMPAEEKRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            VRGLNR+A+A LVGTKYD++ T+P EE+ +ID+ ARKFAKAM AP IFTSA  SINVQK
Sbjct:  109 VRGLNRSAFALLVGTKYDVFVTLPPEEQAEIDRNARKFAKAMKAPCIFTSAHESINVQK 167
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BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Match: A0A6U4CJH1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CJH1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.620e-19
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 2 
Query:   86 VRGLNRNAYAFLVGTKYDLYTTMPAEE-KRDIDKQARKFAKAMHAPLIFTSASHSINVQK 262
            VRGLNR+A+AFLVGTKYDLYT    E  +RD+DKQARK+A+AM APL++ SASHSINVQK
Sbjct:  124 VRGLNRSAHAFLVGTKYDLYTQQLDEAAQRDVDKQARKYARAMKAPLVYVSASHSINVQK 183
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10357.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G8_ECTSI6.840e-3094.92SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
A0A835YI98_9STRA1.470e-2583.05SPG1, ras superfamily GTPase n=1 Tax=Tribonema min... [more]
A0A6V1K250_HETAK8.850e-2377.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXX0_9STRA9.480e-2374.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U3ZUB0_9STRA1.130e-2175.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H350_9STRA3.960e-2174.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5G3V5_9STRA5.340e-2164.18Septum-promoting GTP-binding protein 1 n=1 Tax=Hon... [more]
A0A7S2CL26_9STRA2.700e-2072.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YJU8_AURAN1.150e-1971.19Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6U4CJH1_9STRA1.620e-1973.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10357contigS-firma_F_contig10357:2057..4952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10357.507.1prot_S-firma_F_contig10357.507.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10357 2057..4952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.2598336-CDS-S-firma_F_contig10357:2056..21411622815567.2598336-CDS-S-firma_F_contig10357:2056..2141Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 2057..2141 +
1696949421.2428412-CDS-S-firma_F_contig10357:2056..21411696949421.2428412-CDS-S-firma_F_contig10357:2056..2141Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 2057..2141 +
1622815567.2713647-CDS-S-firma_F_contig10357:4453..45551622815567.2713647-CDS-S-firma_F_contig10357:4453..4555Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 4454..4555 +
1696949421.2628474-CDS-S-firma_F_contig10357:4453..45551696949421.2628474-CDS-S-firma_F_contig10357:4453..4555Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 4454..4555 +
1622815567.2807434-CDS-S-firma_F_contig10357:4863..49521622815567.2807434-CDS-S-firma_F_contig10357:4863..4952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 4864..4952 +
1696949421.2738087-CDS-S-firma_F_contig10357:4863..49521696949421.2738087-CDS-S-firma_F_contig10357:4863..4952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10357 4864..4952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10357.507.1

>prot_S-firma_F_contig10357.507.1 ID=prot_S-firma_F_contig10357.507.1|Name=mRNA_S-firma_F_contig10357.507.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=92bp
VAPPPSACSLPLSGHFTRPSGCKAKRFHGARAKPKRLRFSRGDEVRPVHD
HACRGKTRYRQAGTEVREGYARAIDLHISVALYQRPKGKRS*
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mRNA from alignment at S-firma_F_contig10357:2057..4952+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10357.507.1 ID=mRNA_S-firma_F_contig10357.507.1|Name=mRNA_S-firma_F_contig10357.507.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2896bp|location=Sequence derived from alignment at S-firma_F_contig10357:2057..4952+ (Sphaerotrichia firma ET2_F female)
GTCGCGCCGCCACCGTCTGCTTGCTCTCTCCCTCTCTCCGGACATTTCAC
CCGTCCATCGGGCTGCAAGGCGAAGCGTTTCCATGGTGAGCTCGCAAGCT
CTATCGATCAAAGCCTAGCCGACTGGTACACGATGAGGTGTAGTCGATGT
AGTCAAGCCATCAAGCAACTTTTCGCCGGGGGGCGGGCGAACAAACGATG
GCTACATAATATACAGCCGCTTTTCGGTAAAACACAAAGCACGAGAAAAA
TGACGTGTACGAGGACTGCGGGCATTTAGAGTCGAGGAGCCTCGGCCACC
AACCATACCTAGCCCCAGATGCTGAGCTCTTGGAGCGTCGTGGCTATTGG
CAATGTGAGTTGCTTGCCATCGAGTTACCCTTGTACGATGGGGTTTCTTC
TCGCTGTGTGTCGTCCCTACATGATGTAGAGGTGGGACTCCACGACTCGA
TGGCAACCTCGGTGGTGGCCGTTGGTTCATGTTCGTCTGTAAATTTACAG
TAGGGCGGGCCCTATCATCAGTCTACGAATAGATCAGTCTTCCTCACGTG
AAATACACAGGGACGTCTTCAGGCTATACCGTCAGCAGATGCCAACCAGA
GAGAACAGCGGGGAATACCTGGTTTCTGCTACATACGGGAGGGTAACTTA
TGCTCCATTTCCCATCAGGCAGGGCGGATTGTGCGTTTTTGCTCTTTTTC
GCCTTAGGCAAACCCGCGACCGCATCCCCATCAACCTATGTTTGTCTTCG
TGCGTGCGGGTTTCCCAACAGAAGTACTTGGCTGCAAGATGTACATTTTT
CTCCTTTCGAATTGATGTACTGCACACGGTGCCTGGTTGTCGTGAACCGG
ACGCGGAACCCTCCGGCATTCTACATATGTAGGCGGGTGTGGGAAGCCTC
CGGCTCTTGTCGTGGCTGTCTTCGTTTCGCTGGCGCAGTGTCTGACCCTC
TTTAGGTTTGGTTGGTTGGGGTTGTTCTACATGTATGTATGTTTTATTTG
ATCTCTCCGAGTGGTATGTACCCTACTTTGTGATTTGCGTCAGCGAAACG
CAAGACCCTTCCGAGTGACAGTTTAGAATCGCATGGTGTGCACATAGTCT
ACATACCATATTTTTTCTGAGCTTCTTTGCGGCGACGATTGTGCCCAGTT
TTTGTGACCACGGGCTCCCATGGATGTTTTGGGAATGTAGAGCTAATGTG
AGAAACAAACAAAACAAACCAACATGCGTTGCTGTTGTAAAAACTGGCAA
TTACCTTTTACACCTGATCAGCCGTCGTGTGTCTGCCCGTTTACGTTGTC
TCCCTTTGTATGGGGCATGCTGGCCAAACCTCTAGTGATGGCTGATTTTT
CGATCACACCAGCAACCAGCACACACAGATAGTCACCGTTGCCACCAATC
CCGACGCCGGCGAACAATCTTCCGCAGCCCAGTACACACCCCAAAGTTAG
TGTTTTCCTCTCTTGGGCTCCTTCCCGTGGCTGCGCGGCTGTGCATGGCG
ACCCTGCCACAAAAATGCAATCATTTGGTGACTCTGCTGCATGCACGTGT
AGCCCCCATCCTCCAGCTTCACGGAGGAGGTGGGCACGACGAGGTGCTGC
GATTGCCATCGTTGTTCGTCTGTCAGATGCGTTGCCTTGACTTGCTCTCC
CTTCCCTTGAAAGCATGCCCACCGAATGGTTCACCTTGACCTTTCTGCTG
TTCTTTCTGCCTATCATAGTAGAACAACTAGGGTGGCACGAGAAGGTATG
CAGCAGTTGAGGGTGCTGTCTACCCTTAATATGGCGACAAGTTGGTGGGT
GCGGGAGGCACGATCAAACAGCGGCTGGCTGCACCCCAGTACTCTAGAGA
GGATAGTGCGTTGAGACCTGCGAGACAGACCGGGCAACGTCAAGGTACGA
CGCAATAATCGGGAGAGCTTGAATGCGTTGTTGTGTTGTTGTGTTGTTGG
TGTTGGTGGTAGTGGTGGGGATGTTGGGAGCCATTACGGGATCGACCTTG
TTACTCGTGACGTTGGTCCGTAGGTGGTGTATCTGCATGTGATCAGTTTG
CGTGCTTCACAAAAGCATTTGAGGCGGTTGGGGGGGCGTTTGGATGGCCG
CGTTCTTGCTGAGCTTGGGTGGAACGGAGGACACAGAGGGGTAGCCCGAG
CTCTACCCAATCCAAGGTCGCTTGTCTGTCTCGCCTTGCCTTCCTTCGCT
TGTGATTTCCGTAACTCTTAGATTTTCTTCATCAACCTCTGTGCCGTTCG
TCTCACTGCTGTTTTATTCGCGCGTGTATACATAACGCTTCGTGTTGACA
AAATTAAGGCCCAAGGGTCGGTTTCCGCGTTGTGTGCTTTCTCGCCAACC
TTGCTCCCGTGTGTGTTGGATGTGGGCGGTTTCTGCTACTACGATAGGTG
CGAGGGCTAAACCGAAACGCTTACGCTTTTCTCGTGGGGACGAAGTACGA
CCTGTACACGACCATGCCTGCCGAGGAAAAACGAGATATCGACAAGCAGG
TACGCATGGGGCACGAAACTTCGGCGAATTCTCCCAGTTCGTGCTGTTTG
TGCTTCTGTTGCTCTCCGGGGATGATGCGTGTCTTTGCTCTTGTCCGGGC
ACGCTGTCATGAGGATTGCCCCCTTTCCCGCCTACTCGTACTGTAGGAAT
TTGTGGCGTGTTCGTGTGAACGGGAGCCTGAAGTCCAGCGGCCTCCATGG
TTCTGTCTCCTCCATTATTGTTTTTTGCCTCTTGGTCAAGCCTGCTTACG
TTTCAAGGACGTGTTTCCGCCCGTTTGGAATATTGCGCTCCCGTGTTTGT
TCTTCAGGCACGGAAGTTCGCGAAGGCTATGCACGCGCCATTGATCTTCA
CATCAGCGTCGCACTCTATCAACGTCCAAAAGGCAAGAGGTCTTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10357:2057..4952+

>mRNA_S-firma_F_contig10357.507.1 ID=mRNA_S-firma_F_contig10357.507.1|Name=mRNA_S-firma_F_contig10357.507.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=552bp|location=Sequence derived from alignment at S-firma_F_contig10357:2057..4952+ (Sphaerotrichia firma ET2_F female)
GTCGCGCCGCCACCGTCTGCTTGCTCTCTCCCTCTCTCCGGACATTTCAC
CCGTCCATCGGGCTGCAAGGCGAAGCGTTTCCATGGTCGCGCCGCCACCG
TCTGCTTGCTCTCTCCCTCTCTCCGGACATTTCACCCGTCCATCGGGCTG
CAAGGCGAAGCGTTTCCATGGTGCGAGGGCTAAACCGAAACGCTTACGCT
TTTCTCGTGGGGACGAAGTACGACCTGTACACGACCATGCCTGCCGAGGA
AAAACGAGATATCGACAAGCAGGTGCGAGGGCTAAACCGAAACGCTTACG
CTTTTCTCGTGGGGACGAAGTACGACCTGTACACGACCATGCCTGCCGAG
GAAAAACGAGATATCGACAAGCAGGCACGGAAGTTCGCGAAGGCTATGCA
CGCGCCATTGATCTTCACATCAGCGTCGCACTCTATCAACGTCCAAAAGG
CAAGAGGTCTTGAGCACGGAAGTTCGCGAAGGCTATGCACGCGCCATTGA
TCTTCACATCAGCGTCGCACTCTATCAACGTCCAAAAGGCAAGAGGTCTT
GA
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