mRNA_S-firma_F_contig10351.501.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10351.501.1
Unique NamemRNA_S-firma_F_contig10351.501.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10351.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10351contigS-firma_F_contig10351:2774..3218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.8144479-UTR-S-firma_F_contig10351:2773..28911622815566.8144479-UTR-S-firma_F_contig10351:2773..2891Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10351 2774..2891 +
1696949420.9660494-UTR-S-firma_F_contig10351:2773..28911696949420.9660494-UTR-S-firma_F_contig10351:2773..2891Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10351 2774..2891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.827247-CDS-S-firma_F_contig10351:2891..32181622815566.827247-CDS-S-firma_F_contig10351:2891..3218Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10351 2892..3218 +
1696949420.9753125-CDS-S-firma_F_contig10351:2891..32181696949420.9753125-CDS-S-firma_F_contig10351:2891..3218Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10351 2892..3218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10351.501.1prot_S-firma_F_contig10351.501.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10351 2892..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10351.501.1

>prot_S-firma_F_contig10351.501.1 ID=prot_S-firma_F_contig10351.501.1|Name=mRNA_S-firma_F_contig10351.501.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=109bp
MPVGFHGGSVCENDLVSSMSTTAVIEKSTPSICLAACREPAASHQNTTQM
RQTTNLLERLVAGREREQTCSKPERTNFLRCAVCIQDLVACCSPHSPVFP
PVVVPMSCL
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mRNA from alignment at S-firma_F_contig10351:2774..3218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10351.501.1 ID=mRNA_S-firma_F_contig10351.501.1|Name=mRNA_S-firma_F_contig10351.501.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=445bp|location=Sequence derived from alignment at S-firma_F_contig10351:2774..3218+ (Sphaerotrichia firma ET2_F female)
GTTCCACATCGCTGCTCTTTGCTGCCGCTGACAGTGATAGTGATGATGGT
GGTGGTGGTGATGATGCCGTTGCATGGATGGTTTGCTAACTTGACCGTTC
TGTGTGGGGTGTTGGAGGATGCCGGTTGGCTTTCATGGAGGCTCCGTTTG
TGAGAACGACTTGGTGTCGTCGATGTCAACTACTGCTGTGATCGAAAAAT
CGACCCCATCGATCTGTCTAGCGGCGTGCAGAGAGCCAGCCGCCAGCCAC
CAAAACACGACACAGATGCGACAAACGACAAACCTACTTGAACGCCTTGT
TGCCGGGCGTGAACGTGAACAAACTTGTTCGAAGCCCGAACGAACGAACT
TCCTGCGGTGTGCAGTTTGTATTCAGGATCTCGTAGCTTGCTGCAGCCCT
CACTCTCCGGTTTTTCCCCCGGTTGTTGTTCCAATGTCTTGTCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10351:2774..3218+

>mRNA_S-firma_F_contig10351.501.1 ID=mRNA_S-firma_F_contig10351.501.1|Name=mRNA_S-firma_F_contig10351.501.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=654bp|location=Sequence derived from alignment at S-firma_F_contig10351:2774..3218+ (Sphaerotrichia firma ET2_F female)
ATGCCGGTTGGCTTTCATGGAGGCTCCGTTTGTGAGAACGACTTGGTGTC
GTCGATGTCAACTACTGCTGTGATCGAAAAATCGACCCCATCGATCTGTC
TAGCGGCGTGCAGAGAGCCAGCCGCCAGCCACCAAAACACGACACAGATG
CGACAAACGACAAACCTACTTGAACGCCTTGTTGCCGGGCGTGAACGTGA
ACAAACTTGTTCGAAGCCCGAACGAACGAACTTCCTGCGGTGTGCAGTTT
GTATTCAGGATCTCGTAGCTTGCTGCAGCCCTCACTCTCCGGTTTTTCCC
CCGGTTGTTGTTCCAATGTCTTGTCTGATGCCGGTTGGCTTTCATGGAGG
CTCCGTTTGTGAGAACGACTTGGTGTCGTCGATGTCAACTACTGCTGTGA
TCGAAAAATCGACCCCATCGATCTGTCTAGCGGCGTGCAGAGAGCCAGCC
GCCAGCCACCAAAACACGACACAGATGCGACAAACGACAAACCTACTTGA
ACGCCTTGTTGCCGGGCGTGAACGTGAACAAACTTGTTCGAAGCCCGAAC
GAACGAACTTCCTGCGGTGTGCAGTTTGTATTCAGGATCTCGTAGCTTGC
TGCAGCCCTCACTCTCCGGTTTTTCCCCCGGTTGTTGTTCCAATGTCTTG
TCTG
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