mRNA_S-firma_F_contig10350.500.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10350.500.1
Unique NamemRNA_S-firma_F_contig10350.500.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Match: A0A7S2P077_9STRA (Histone acetyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P077_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.200e-15
Identity = 38/70 (54.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   19 QETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPRGHGRVVDHAVLMHYLASAEDRGFSKA 228
            QE D  D LL  + VYEY + CPEPNR  VYIS LDSV YL PRG    + H +L+ Y   A  RGF KA
Sbjct:    2 QEIDGIDTLLFALYVYEYGSDCPEPNRNRVYISYLDSVHYLRPRGLRTKIYHEILIQYFDYARKRGFEKA 71
[Close]
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Match: A0A7S1Y085_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y085_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.590e-13
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   10 LVIQETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPRGHGRVVDHAVLMHYLASAEDRGFSKA 228
            ++ Q+ D  D +L  M VYEY   CPEPNRG VYIS LDSV YL PR +   V H +L  YL     RGF  A
Sbjct:  370 VLFQKIDGVDVVLFAMYVYEYGMRCPEPNRGRVYISYLDSVHYLQPRQYRTEVYHEILASYLEWVRVRGFHTA 442
[Close]
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Match: B8C9A0_THAPS (Histone acetyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9A0_THAPS)

HSP 1 Score: 61.6 bits (148), Expect = 2.670e-9
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   10 LVIQETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPRGHGRVVDHAVLMHYLASAEDRGFSKA 228
            L+ Q+    D LL  M VYEY + C  PNR  VYIS LDSV+YL P  +      ++++ YL  A  RGF  A
Sbjct:  389 LLFQKIHGVDVLLFGMYVYEYGDKCAAPNRRRVYISYLDSVQYLEPSSYRTTTYQSIIVEYLRYARMRGFHTA 461
[Close]
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Match: A0A067BKM0_SAPPC (Histone acetyltransferase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BKM0_SAPPC)

HSP 1 Score: 49.3 bits (116), Expect = 5.990e-5
Identity = 29/72 (40.28%), Postives = 37/72 (51.39%), Query Frame = 1 
Query:   13 VIQETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPRGHGRVVDHAVLMHYLASAEDRGFSKA 228
            + QET     LL  M V+E+D      N+  VY+S LDSV YL P      V H +L+ YL   + RGF  A
Sbjct:  621 MFQETHGVSVLLFGMYVHEFDEQESAANQRRVYVSYLDSVNYLEPVHLRTKVYHEILIGYLEFVKQRGFHTA 692
[Close]
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Match: T0R1I4_SAPDV (Histone acetyltransferase n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1I4_SAPDV)

HSP 1 Score: 49.3 bits (116), Expect = 6.040e-5
Identity = 29/72 (40.28%), Postives = 37/72 (51.39%), Query Frame = 1 
Query:   13 VIQETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPRGHGRVVDHAVLMHYLASAEDRGFSKA 228
            + QET     LL  M V+E+D      N+  VY+S LDSV YL P      V H +L+ YL   + RGF  A
Sbjct: 1150 MFQETHGVSVLLFGMYVHEFDEQESAANQRRVYVSYLDSVNYLEPVHLRTKVYHEILIGYLEFVKQRGFHTA 1221
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10350.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2P077_9STRA7.200e-1554.29Histone acetyltransferase n=1 Tax=Leptocylindrus d... [more]
A0A7S1Y085_9STRA5.590e-1350.68Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]
B8C9A0_THAPS2.670e-943.84Histone acetyltransferase n=1 Tax=Thalassiosira ps... [more]
A0A067BKM0_SAPPC5.990e-540.28Histone acetyltransferase n=1 Tax=Saprolegnia para... [more]
T0R1I4_SAPDV6.040e-540.28Histone acetyltransferase n=2 Tax=Saprolegnia dicl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10350contigS-firma_F_contig10350:1036..1839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009040111.1
PFAMsBromodomain,HAT_KAT11,PHD,ZZ,zf-TAZ
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0007276,GO:0007283,GO:0008150,GO:0016604,GO:0019953,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0048232,GO:0048609,GO:0051704,GO:0070013
Evalue1.31e-13
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota
EC2.3.1.48
Descriptionhistone acetyltransferase activity
COG categoryBK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7570245-CDS-S-firma_F_contig10350:1035..11141622815566.7570245-CDS-S-firma_F_contig10350:1035..1114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 1036..1114 -
1696949420.9444408-CDS-S-firma_F_contig10350:1035..11141696949420.9444408-CDS-S-firma_F_contig10350:1035..1114Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 1036..1114 -
1622815566.7709641-CDS-S-firma_F_contig10350:1687..18391622815566.7709641-CDS-S-firma_F_contig10350:1687..1839Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 1688..1839 -
1696949420.9562492-CDS-S-firma_F_contig10350:1687..18391696949420.9562492-CDS-S-firma_F_contig10350:1687..1839Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 1688..1839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10350.500.1prot_S-firma_F_contig10350.500.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10350 1036..1839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10350.500.1

>prot_S-firma_F_contig10350.500.1 ID=prot_S-firma_F_contig10350.500.1|Name=mRNA_S-firma_F_contig10350.500.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=77bp
RWFLVIQETDAADRLLLVMNVYEYDNTCPEPNRGFVYISLLDSVEYLTPR
GHGRVVDHAVLMHYLASAEDRGFSKAQ
back to top

mRNA from alignment at S-firma_F_contig10350:1036..1839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10350.500.1 ID=mRNA_S-firma_F_contig10350.500.1|Name=mRNA_S-firma_F_contig10350.500.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=804bp|location=Sequence derived from alignment at S-firma_F_contig10350:1036..1839- (Sphaerotrichia firma ET2_F female)
AGGTGGTTCCTCGTGATCCAAGAAACGGATGCAGCGGACAGGCTCCTCCT
CGTGATGAATGTGTACGAGTATGACAACACCTGCCCCGAACCCAACCGCG
GGTTCGTCTACATCTCGCTGCTTGACTCGGTCGAGTACTTGACACCGAGA
GGGTGAGAGACAGCACGCCCACTCTTCTGCGCTACTATGAATAGTACAGA
GAGTGCTTGATAGGCTGGGTTTCGGGTCTGGCTGTGGATGCGGAGTATTG
ATTTTGACTGCATGACCACACGTTCTTGGCGAAACGGCACAAGTAATTTA
ATATCGTACCGAGTCTATGCTCAACAAACTGCCATGAGAAACGTAGGCAG
CGTCTCTTCTCGCTTATCGTGTTCGCACCGAACTATTTCCGGTCTCGTTT
CCTGCGCGATCACATGCTGACCCTTGCTCTGGCGTCCATAATGTTCCAAC
TAGCTTTCCATCCTTGGGCTACGTGAACCTTCTACTGTAAGCTTGTTTCT
TGTACACAAGTGCGAAACCGAAGACCCACGATACTTCGCTTCGTGTGCTG
GACAATCTGCTGCACACTTGGTGTTCAGCAAACAAAACGCGCATCCTTGG
CCAACTGTTGCTTCATCTCCTGCGCACCTCATCATATTGAGCATGTTTTT
CTCTTTGCTAAAGTGTGCTTTGTCCCTTTTTCGCGATTGTTTGTGTTGTC
TCTTTTGCCAACGTTCGAAATACAGCCACGGAAGAGTGGTAGACCACGCC
GTTCTGATGCACTACCTGGCCAGCGCCGAGGACAGAGGGTTTAGCAAAGC
CCAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10350:1036..1839-

>mRNA_S-firma_F_contig10350.500.1 ID=mRNA_S-firma_F_contig10350.500.1|Name=mRNA_S-firma_F_contig10350.500.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=462bp|location=Sequence derived from alignment at S-firma_F_contig10350:1036..1839- (Sphaerotrichia firma ET2_F female)
AGGTGGTTCCTCGTGATCCAAGAAACGGATGCAGCGGACAGGCTCCTCCT
CGTGATGAATGTGTACGAGTATGACAACACCTGCCCCGAACCCAACCGCG
GGTTCGTCTACATCTCGCTGCTTGACTCGGTCGAGTACTTGACACCGAGA
GGAGGTGGTTCCTCGTGATCCAAGAAACGGATGCAGCGGACAGGCTCCTC
CTCGTGATGAATGTGTACGAGTATGACAACACCTGCCCCGAACCCAACCG
CGGGTTCGTCTACATCTCGCTGCTTGACTCGGTCGAGTACTTGACACCGA
GAGGCCACGGAAGAGTGGTAGACCACGCCGTTCTGATGCACTACCTGGCC
AGCGCCGAGGACAGAGGGTTTAGCAAAGCCCAGCCACGGAAGAGTGGTAG
ACCACGCCGTTCTGATGCACTACCTGGCCAGCGCCGAGGACAGAGGGTTT
AGCAAAGCCCAG
back to top