mRNA_S-firma_F_contig10350.499.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10350.499.1
Unique NamemRNA_S-firma_F_contig10350.499.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10350.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10350contigS-firma_F_contig10350:207..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10350.499.1prot_S-firma_F_contig10350.499.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10350 207..658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.6860938-CDS-S-firma_F_contig10350:206..3351622815566.6860938-CDS-S-firma_F_contig10350:206..335Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 207..335 -
1696949420.9069347-CDS-S-firma_F_contig10350:206..3351696949420.9069347-CDS-S-firma_F_contig10350:206..335Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 207..335 -
1622815566.7005715-CDS-S-firma_F_contig10350:508..6581622815566.7005715-CDS-S-firma_F_contig10350:508..658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 509..658 -
1696949420.9206898-CDS-S-firma_F_contig10350:508..6581696949420.9206898-CDS-S-firma_F_contig10350:508..658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10350 509..658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7150538-UTR-S-firma_F_contig10350:658..6691622815566.7150538-UTR-S-firma_F_contig10350:658..669Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10350 659..669 -
1696949420.9309125-UTR-S-firma_F_contig10350:658..6691696949420.9309125-UTR-S-firma_F_contig10350:658..669Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10350 659..669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10350.499.1

>prot_S-firma_F_contig10350.499.1 ID=prot_S-firma_F_contig10350.499.1|Name=mRNA_S-firma_F_contig10350.499.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=93bp
MLDKAKRQGIVVEYTNLLKANQGRQNHQVPYFPGDIWPQTVTAVSNRNRM
QGGTPRHAATATATATATPSNAPDFGVRVAKSNREEEGQPLMK
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mRNA from alignment at S-firma_F_contig10350:207..669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10350.499.1 ID=mRNA_S-firma_F_contig10350.499.1|Name=mRNA_S-firma_F_contig10350.499.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=463bp|location=Sequence derived from alignment at S-firma_F_contig10350:207..669- (Sphaerotrichia firma ET2_F female)
GGTACATCGATATGCTCGACAAGGCCAAGAGGCAGGGTATTGTCGTGGAG
TACACCAACCTCCTCAAGGCCAACCAAGGGCGACAAAACCATCAGGTTCC
TTACTTCCCCGGGGATATCTGGCCGCAAACTGTCACCGCCGTTAGCAACC
GGAACCGGATGGTAAGTTCGAAAGCGAAGCACGAACGTGAATATTCTGAG
CGGGGGTGGGGAAAGAGGGTGCGTGTGTCCATTTCGTACACGATGTTTTC
GGACGCCGAGCAACGGACAGTAAACTCATTGTCTACCCGATGCCTACATT
TACCACTCTGCTGCTTTTTTTCGTCGACGAGCAGCAGGGGGGAACGCCTC
GCCACGCTGCCACTGCCACTGCCACTGCCACCGCCACCCCCTCCAACGCG
CCGGACTTCGGGGTTCGCGTGGCCAAGAGCAACCGCGAGGAGGAGGGGCA
GCCTCTGATGAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10350:207..669-

>mRNA_S-firma_F_contig10350.499.1 ID=mRNA_S-firma_F_contig10350.499.1|Name=mRNA_S-firma_F_contig10350.499.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=558bp|location=Sequence derived from alignment at S-firma_F_contig10350:207..669- (Sphaerotrichia firma ET2_F female)
ATGCTCGACAAGGCCAAGAGGCAGGGTATTGTCGTGGAGTACACCAACCT
CCTCAAGGCCAACCAAGGGCGACAAAACCATCAGGTTCCTTACTTCCCCG
GGGATATCTGGCCGCAAACTGTCACCGCCGTTAGCAACCGGAACCGGATG
ATGCTCGACAAGGCCAAGAGGCAGGGTATTGTCGTGGAGTACACCAACCT
CCTCAAGGCCAACCAAGGGCGACAAAACCATCAGGTTCCTTACTTCCCCG
GGGATATCTGGCCGCAAACTGTCACCGCCGTTAGCAACCGGAACCGGATG
CAGGGGGGAACGCCTCGCCACGCTGCCACTGCCACTGCCACTGCCACCGC
CACCCCCTCCAACGCGCCGGACTTCGGGGTTCGCGTGGCCAAGAGCAACC
GCGAGGAGGAGGGGCAGCCTCTGATGAAGCAGGGGGGAACGCCTCGCCAC
GCTGCCACTGCCACTGCCACTGCCACCGCCACCCCCTCCAACGCGCCGGA
CTTCGGGGTTCGCGTGGCCAAGAGCAACCGCGAGGAGGAGGGGCAGCCTC
TGATGAAG
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