mRNA_S-firma_F_contig1035.498.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1035.498.1
Unique NamemRNA_S-firma_F_contig1035.498.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: D8LBP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBP7_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.150e-123
Identity = 185/211 (87.68%), Postives = 193/211 (91.47%), Query Frame = 1 
Query:    1 MSVDPDKLYIVHSKPKHDSHSDAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDDVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVWCAMRFELALPLDVEVALAVSKAGQIVAEPSFEGKPIIRMGK 633
            MSVDPD +YIVHSKPKHDSH+DAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDD ELK  IRQAKNAIEAKK+ARV KP P WR  SEKI EALVRDKFRRNAKAREVLV TGRVKLVYTNTHDDR WGVC GKG+NKLGKLLERVRADALAGKDTE WCA RF+LALPLDV V  AVSKAG+IVA+PSFEGKP+IRMGK
Sbjct:    1 MSVDPDTVYIVHSKPKHDSHADAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDDFELKAAIRQAKNAIEAKKIARVAKPKPDWRGSSEKIAEALVRDKFRRNAKAREVLVGTGRVKLVYTNTHDDRFWGVCTGKGENKLGKLLERVRADALAGKDTEAWCATRFQLALPLDVMVGFAVSKAGKIVADPSFEGKPVIRMGK 211
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: A0A835YNI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI4_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.660e-42
Identity = 90/209 (43.06%), Postives = 123/209 (58.85%), Query Frame = 1 
Query:   10 DPDKLYIVHSKPKH-DSHSDAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDDVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVWCAMRFELALPLDVEVALAVSKAGQIVAEPSFEGKPIIRMGK 633
            +P + Y + SKPK  D    AI   + ++E LSN ++  V L GD EPYP+VEHA QASKT+D++L+  IR A  AIEAKK AR +  + AWR+ SE I+EALVRDKFRR+ K RE L+ TG   L Y N H+D++WGVC GKG+NKLG+                          +P      + +SK G ++  P  EG  ++++GK
Sbjct:    3 EPGRYYYMPSKPKAVDPLKTAIHIGKEEYEYLSNLHRAKVYLPGDEEPYPTVEHAFQASKTEDMQLRAEIRAAPTAIEAKKAARKIAVSDAWRSRSEAIMEALVRDKFRRHDKYREQLLGTGAQLLAYVNEHNDKLWGVCDGKGENKLGEFA-----------------------LVPQCSAAPMNISKGGAVLDTPVIEGTALVQLGK 188
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BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: A0A7S2SUX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUX0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.300e-34
Identity = 76/177 (42.94%), Postives = 102/177 (57.63%), Query Frame = 1 
Query:    4 SVDPDKLYIVHSKPKHDSHSDA-IRQFEGDFECLSNTYKCPVSLRGDPE-PYPSVEHALQASKTDDVELKGTIRQAKNAIEAKKLARVV------KPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVW 510
            ++DPDK+     KPK      A    F G+ + LS  +KC V L  DP+  YP+VEHAL ASKT D+E++  I   ++ + AK+L              AWRA S  I+ AL RDKFRR  + RE L+ TG  KLV++NT++D  WGVC GKG N LG  L+++R +   GKD   W
Sbjct:   70 TLDPDKVRYAKPKPKIQEEEPAGSGTFSGELKFLSPMHKCQVQLPSDPQRTYPTVEHALAASKTSDMEIRDKILAEEDPVAAKRLGTKCLGKSDSDAAKAWRARSPGIMAALFRDKFRRTPRYRERLLGTGHQKLVHSNTYNDTYWGVCKGKGQNVLGDTLQQLREEIRNGKDLNAW 246
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BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: K8YN62_NANGC (Rna recognition motif-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YN62_NANGC)

HSP 1 Score: 117 bits (293), Expect = 6.190e-29
Identity = 75/182 (41.21%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:   70 IRQFEGDFECLSNTYKCPVSLRGDP-------EPYPSVEHALQASKTDDVELKGTIRQAKNAIEAK----KLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGK-DTEVWCAMRFELALPLDVEVALAVSKAG 579
            I  F G+++ LS   K  V L G+        + YP+VEHALQASK+ D   + +I  +K+A+EAK    K   V K   AW+  S  ++EAL+RDKFRR+   R+ L+ TG  +LVY N H+D+ WG C GKG N LG+LLERVRAD   G     +W    F       V + ++V++ G
Sbjct:   56 ITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQ--AWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEGLLGILLWAKQVFNATSDSKVRLDVSVTREG 235
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: W7TWY4_9STRA (Rna recognition motif-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWY4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.700e-29
Identity = 81/202 (40.10%), Postives = 113/202 (55.94%), Query Frame = 1 
Query:   70 IRQFEGDFECLSNTYKCPVSLRGDP-------EPYPSVEHALQASKTDDVELKGTIRQAKNAIEAK----KLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGK-DTEVWCAMRFELALPLDVEVALAVSKAGQIVAEP--SFEGKPIIRMGK 633
            I  F G+++ LS   K  V L G+        + YP+VEHALQASK+ D   + +I  +K+A+EAK    K   V K   AW+  S  ++EAL+RDKFRR+   R+ L+ TG  +LVY N H+D+ WG C GKG N LG+LLERVRAD   G     +W    F       V + ++V++ G  + E   + E K I+  GK
Sbjct:   36 ITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQ--AWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEGLLGILLWAKQVFNATSDSKVRLDVSVTREGHPLPEADLTLERKAIVTFGK 235
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: A0A4D9DEI1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEI1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.610e-28
Identity = 79/202 (39.11%), Postives = 112/202 (55.45%), Query Frame = 1 
Query:   70 IRQFEGDFECLSNTYKCPVSLRGDP-------EPYPSVEHALQASKTDDVELKGTIRQAKNAIEAK----KLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGK-DTEVWCAMRFELALPLDVEVALAVSKAGQIVAEP--SFEGKPIIRMGK 633
            I  F G+++ L    K  V + G+        + YP+VEHALQASK+ D   + +I  +K+A+EAK    K   V K   AW+  S  ++EAL+RDKFRR+   R+ L+ TG  +LVY N H+D+ WG C GKG N LG+LLERVRAD   G     +W    F       V + ++V++ G  + E   + E K I+  GK
Sbjct:   36 ITAFTGEYDFLCTLSKSRVVIPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQ--AWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKGKGHNHLGQLLERVRADEKEGLLGILLWAKQVFNATSDSKVRLDVSVTREGHPMPEADLTLERKAIVTFGK 235
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: A0A7S0JJA0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJA0_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 3.020e-27
Identity = 74/197 (37.56%), Postives = 106/197 (53.81%), Query Frame = 1 
Query:   52 DSHSDAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTD-DVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVWCAMRFELALPLDVE--VALAVSKAGQIVAEPSFEGKPIIRMGK 633
            D   ++I  F G +E + N ++C V   G    Y SVEHA QA K   DVE    IR+A +  EA  L + V   P+W      +++AL+RDKFRR+A  RE L+ +    L+ TNT  +  WGVC G+G N LGKLL  +R +  AG DT+ W    F +A P      ++L V+K G ++       + +I +GK
Sbjct:   52 DECCESITSFTGRWEAMGNWFQCAVIHEG--VTYRSVEHAFQAVKAAADVEAVKAIRRASSPKEAHALGQKVPLPPSWERRKLGVMQALLRDKFRRDASLRERLLRSAPKNLIATNTWGEVYWGVCTGRGGNHLGKLLMGLRQEVQAGTDTDAWLLGSFNIAKPSAEHEPLSLEVTKGGAVIDTCKLGTEALIMIGK 246
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BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: R1ET62_EMIHU (RRM domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ET62_EMIHU)

HSP 1 Score: 107 bits (266), Expect = 2.710e-23
Identity = 71/194 (36.60%), Postives = 102/194 (52.58%), Query Frame = 1 
Query:   64 DAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTD-DVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVWCAMRFELALPLDVE--VALAVSKAGQIVAEPSFE-GKPIIRMGK 633
            ++I  F G +E L+N +   V  RG    Y SVEHA QA+K   D +    IR+AK    A  L + V     W      ++EAL+RDKF R+A  RE L+ T +  L+ TN+  +  WGV GG+G N LGK L ++R +A  G D   W +  F+LA   D    ++L V K G +V   +   G+  + +GK
Sbjct:   44 ESITDFTGRWEALANWFPAAVVHRG--VRYASVEHAFQAAKAGADADAARAIREAKTPQAAHALGQKVPLPQDWERRKLGLMEALLRDKFVRDAALRERLLRTDQQNLIATNSWGETFWGVSGGRGSNALGKALMKLRGEAREGSDVTAWLSSSFDLARADDPHDGLSLEVHKGGTVVETVALPAGRAALLLGK 235
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BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: R1DBP7_EMIHU (NADAR domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DBP7_EMIHU)

HSP 1 Score: 102 bits (253), Expect = 3.770e-23
Identity = 62/158 (39.24%), Postives = 87/158 (55.06%), Query Frame = 1 
Query:   64 DAIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTD-DVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGKDTEVWCAMRFELA 534
            ++I  F G +E L+N +   V  RG    Y SVEHA QA+K   D +    IR+AK    A  L + V     W      ++EAL+RDKF R+A  RE L+ T +  L+ TN+  +  WGV GG+G N LGK L ++R++A  G D   W +  F+LA
Sbjct:   44 ESITDFTGRWEALANWFPAAVVHRG--VRYASVEHAFQAAKAGADADAARAIREAKTPQAAHALGQKVPLPQDWERRKLGLMEALLRDKFVRDAALRERLLRTDQQNLIATNSWGETFWGVSGGRGSNALGKALMKLRSEAREGADVTAWLSSSFDLA 199
[Close]
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Match: A0A7L9C501_9BACT (NADAR family protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A7L9C501_9BACT)

HSP 1 Score: 100 bits (248), Expect = 5.350e-23
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 1 
Query:   67 AIRQFEGDFECLSNTYKCPVSLRGDPEPYPSVEHALQASKTDDVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEKIVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKLGKLLERVRADALAGK 495
            AI  F G++  LSN +   V+  G  + YPSVEHA QA+KT DV  +  I     A EAK+  R ++    W      ++E  VRDKF  +A     L+ TG  +LV  N   DR WGVC G+G+N LGK+L +VR++   GK
Sbjct:   27 AIDSFSGEYRYLSNFWLAAVTYEG--KRYPSVEHAYQAAKTLDVGERARIAGLATASEAKRAGRGLRVRVDWEQVKLGVMEQCVRDKFLNHADLGAKLLATGEAELVEGNDWGDRFWGVCEGRGENHLGKILMKVRSELRRGK 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1035.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP7_ECTSI1.150e-12387.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNI4_9STRA4.660e-4243.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SUX0_9STRA2.300e-3442.94Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K8YN62_NANGC6.190e-2941.21Rna recognition motif-containing protein (Fragment... [more]
W7TWY4_9STRA8.700e-2940.10Rna recognition motif-containing protein n=2 Tax=N... [more]
A0A4D9DEI1_9STRA7.610e-2839.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0JJA0_9EUKA3.020e-2737.56Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
R1ET62_EMIHU2.710e-2336.60RRM domain-containing protein n=2 Tax=Emiliania hu... [more]
R1DBP7_EMIHU3.770e-2339.24NADAR domain-containing protein n=2 Tax=Emiliania ... [more]
A0A7L9C501_9BACT5.350e-2341.26NADAR family protein n=2 Tax=Planctomycetes TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1035contigS-firma_F_contig1035:23456..26099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBP7
Preferred nameCIRBP
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K05658,ko:K12885,ko:K13098,ko:K13195,ko:K14398
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko03015,ko03040,ko04976,ko05202,ko05206,ko05226,map02010,map03015,map03040,map04976,map05202,map05206,map05226
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006417,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034063,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0035770,GO:0036464,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045727,GO:0045934,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070181,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:1990904,GO:2000112,GO:2000113
Evalue1.89e-124
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
EC3.6.3.44
DescriptionRNA binding
COG categoryH
BRITEko00000,ko00001,ko01000,ko02000,ko03019,ko03041,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size633
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1035.498.1prot_S-firma_F_contig1035.498.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1035 23456..26099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.59831-CDS-S-firma_F_contig1035:23455..234971622815566.59831-CDS-S-firma_F_contig1035:23455..23497Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 23456..23497 +
1696949420.792537-CDS-S-firma_F_contig1035:23455..234971696949420.792537-CDS-S-firma_F_contig1035:23455..23497Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 23456..23497 +
1622815566.6078057-CDS-S-firma_F_contig1035:24036..241591622815566.6078057-CDS-S-firma_F_contig1035:24036..24159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 24037..24159 +
1696949420.8042367-CDS-S-firma_F_contig1035:24036..241591696949420.8042367-CDS-S-firma_F_contig1035:24036..24159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 24037..24159 +
1622815566.6166272-CDS-S-firma_F_contig1035:24539..246411622815566.6166272-CDS-S-firma_F_contig1035:24539..24641Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 24540..24641 +
1696949420.8631828-CDS-S-firma_F_contig1035:24539..246411696949420.8631828-CDS-S-firma_F_contig1035:24539..24641Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 24540..24641 +
1622815566.6270204-CDS-S-firma_F_contig1035:25475..256381622815566.6270204-CDS-S-firma_F_contig1035:25475..25638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 25476..25638 +
1696949420.8790424-CDS-S-firma_F_contig1035:25475..256381696949420.8790424-CDS-S-firma_F_contig1035:25475..25638Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 25476..25638 +
1622815566.6367834-CDS-S-firma_F_contig1035:25896..260991622815566.6367834-CDS-S-firma_F_contig1035:25896..26099Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 25897..26099 +
1696949420.894961-CDS-S-firma_F_contig1035:25896..260991696949420.894961-CDS-S-firma_F_contig1035:25896..26099Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 25897..26099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1035.498.1

>prot_S-firma_F_contig1035.498.1 ID=prot_S-firma_F_contig1035.498.1|Name=mRNA_S-firma_F_contig1035.498.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp
MSVDPDKLYIVHSKPKHDSHSDAIRQFEGDFECLSNTYKCPVSLRGDPEP
YPSVEHALQASKTDDVELKGTIRQAKNAIEAKKLARVVKPTPAWRAGSEK
IVEALVRDKFRRNAKAREVLVETGRVKLVYTNTHDDRVWGVCGGKGDNKL
GKLLERVRADALAGKDTEVWCAMRFELALPLDVEVALAVSKAGQIVAEPS
FEGKPIIRMGK
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mRNA from alignment at S-firma_F_contig1035:23456..26099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1035.498.1 ID=mRNA_S-firma_F_contig1035.498.1|Name=mRNA_S-firma_F_contig1035.498.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2644bp|location=Sequence derived from alignment at S-firma_F_contig1035:23456..26099+ (Sphaerotrichia firma ET2_F female)
ATGTCGGTTGACCCTGATAAGCTATACATCGTCCACTCCAAGGTCGGTAT
TGAAGTTTGCAACGTAGTGCTTGCTTGATGTTGTCTTTGTATCCTGCTCC
CCTGCAATCCCGAAACTGCGAGAACGGGAGCAATCGTGTATCGTATGCAG
CAGCATCAATTATTGATGACGAAGGGTCCGTGTTGGCGCGCGAGAGCAGC
TGCCTACCCTAGAGAAGTACGAGTACGTAATACAGATTGTTTCGAGCTGA
GCTTGCAAAAATCGTAAACGGATCTCTAACATTCAACGTCTATCATCTAT
TTCCATTGGCACTGCTGCTGCCGTTAGTTTCGTGAGCTTGTTCGTGTTCG
TTCGTTTGCTTGCTGCTTGCCGTTGTCGCCACCTCTGAGATGATATCCAA
CGGAAATAGCAAAGAGGGATCGGAGCCCACGCTCTTTAACTGCGGTAGAC
TGCTGTAACCGTAGATTCTCAACGGGTCTGCGGATACCGCAAGTATCTTT
GTCTGGTGTGTTGTTCCTCACCTCCTCTGTCCTTTGTCGTGTCAACCCCC
TCCCCCCCTTCTGACGACGGGGCCATCCCAGCCGAAGCACGACTCGCACT
CCGATGCCATCCGTCAATTCGAGGGCGATTTCGAGTGCCTCTCCAACACG
TACAAGTGCCCGGTTTCATTGCGTGGTGATCCGGAGCCTTACCCTAGCGT
CGAGGTGAGCTAAACTATTGTAATAAAAGGAAAATAATCACGTTCAGAAA
GAAAGGGAGTGGACTGCTGTAGTAAGGTAGGGCGGAGGTCTAGCCCACGC
TACGTACATCGCTCTTCTCCATGTAGACGTAAATGAAGGAGGCACCATTA
TGTGAACGAGGGTTGGATAGGATATTGATACTCACAGAGTACGCTGCTGT
CTACTGTAGGTATTCTACAAACGGCAGAGACACCGCCTGCGACACTGCTG
TGTGTATCTCTCCCTCTGTCCAAGGCCGTGTCTGTAAAGCGTCGCAAGCT
ATCTAGACTCTGATGTGACCGTGTGGTTGGTTCGTTTGCGTGATCGAGTT
GCATGCATGTTCCACCTTTTGCTCACTCGAACAGCATGCCCTGCAAGCCT
CCAAGACGGATGACGTGGAGCTGAAGGGCACCATCAGACAGGCCAAGAAC
GCCATCGAGGCAAAGAAACTCGCACGGGTCGTCAAGGTAAATACGGCTGA
CGAATGTAGAAAATTTACGGAGTATTAAATATTAGATTCGGTGTTCTGTG
GGTACCACCCTGATAAGGGTCGGATCACACCAACGTCTGTCGAGGACGAA
ACCCTCTTTTCCACAATGGCGTCGTGATCACACCAACGTCTGTCGAGGAA
CGACGCCATTGTGGAAAAAGAGGGTTTCGTCCTCGACAGACGTTGGTGTG
ATCCGACCCTTATGAGGGTGGTACCCACAGTTCGTGGATTTCGGTGTGTA
GTCTATCCAACCAAACAGCTTGGGAGTCCTGCCCGTGCAGGCAACCCGCG
GGCCGCATTGCAGTATATAGCCAAAGAGCAGACGTCATCACTTACTGTAT
CCTGGGACATTTACCGAATGGAAGCACACACCCACTCGCGTCCTAACCCA
AAATACTCGCGCGCGCGCTCGCATCGTGTTGTGTTTCTGATCGCCGCTAG
ATGGAGACATACAAGCAGTCCGTGCGGCTGGAGCCGTATACCGTAGGTGA
CATAAGACACTCTCAACAACTGTAGACAGTACCACCCGCTGTGAACTTTT
TTTGGGCACTAAGTATGCGACCGAGAGCGCACAGTACTCAAATACCAAGT
AGGGGACATCAGAAAACACCCCCCCTATACAATACCACACCCTGTGATAA
GTGAAAGGTGTTTTAGACTGGAATTGCTATCACAGGGGTTTGTTATCTTA
TGTCACCTACGGTACCCCTACACTCCCACGCCAACGCTTTTCACGACTGC
CCCTACACCATACATGTAGACTATATGACTACTCTGCCATGTGTTCCGTG
TATCCACAACATTTCCGCAGCCAACGCCGGCGTGGCGCGCTGGCTCCGAG
AAGATCGTGGAGGCCCTGGTCCGAGACAAGTTTCGTCGGAACGCTAAGGC
GAGGGAGGTTCTGGTAGAGACGGGCCGCGTCAAGCTCGTCTACACCAACA
CGCACGACGACCGAGTCTGGGGCGTGTGCGGCGGTGAGTGAGGCTCTGGT
GTACCTAAAAGTCGTTGCCGATGTGGTTGCTTTTTTTTGCTACTGCCGCA
AGCTGCCGGCTGGTCTGCTGCATCATCCAGCCAGCCAAGCCACTCCACCG
CAAGGATGATCGCAGTTTTGGCCCCCACGCGGGGTAGCCGCATGCTTCGT
TCTGGTTCTCATGACGGCTTGAATGTTGATCAAAAATCGAAACGACACCG
AAAAAAAAAAGGTGTTGTCACCGACTCATAATTGCACGCAGGCAAGGGTG
ACAACAAGCTCGGCAAGCTGCTGGAGCGGGTCCGGGCGGACGCCCTCGCC
GGCAAGGACACGGAGGTGTGGTGCGCCATGCGCTTTGAGCTGGCGCTGCC
GCTGGACGTGGAGGTAGCCCTGGCGGTGTCGAAAGCCGGTCAGATCGTGG
CGGAGCCCTCGTTCGAGGGCAAACCGATCATCAGGATGGGTAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1035:23456..26099+

>mRNA_S-firma_F_contig1035.498.1 ID=mRNA_S-firma_F_contig1035.498.1|Name=mRNA_S-firma_F_contig1035.498.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-firma_F_contig1035:23456..26099+ (Sphaerotrichia firma ET2_F female)
ATGTCGGTTGACCCTGATAAGCTATACATCGTCCACTCCAAGATGTCGGT
TGACCCTGATAAGCTATACATCGTCCACTCCAAGCCGAAGCACGACTCGC
ACTCCGATGCCATCCGTCAATTCGAGGGCGATTTCGAGTGCCTCTCCAAC
ACGTACAAGTGCCCGGTTTCATTGCGTGGTGATCCGGAGCCTTACCCTAG
CGTCGAGCCGAAGCACGACTCGCACTCCGATGCCATCCGTCAATTCGAGG
GCGATTTCGAGTGCCTCTCCAACACGTACAAGTGCCCGGTTTCATTGCGT
GGTGATCCGGAGCCTTACCCTAGCGTCGAGCATGCCCTGCAAGCCTCCAA
GACGGATGACGTGGAGCTGAAGGGCACCATCAGACAGGCCAAGAACGCCA
TCGAGGCAAAGAAACTCGCACGGGTCGTCAAGCATGCCCTGCAAGCCTCC
AAGACGGATGACGTGGAGCTGAAGGGCACCATCAGACAGGCCAAGAACGC
CATCGAGGCAAAGAAACTCGCACGGGTCGTCAAGCCAACGCCGGCGTGGC
GCGCTGGCTCCGAGAAGATCGTGGAGGCCCTGGTCCGAGACAAGTTTCGT
CGGAACGCTAAGGCGAGGGAGGTTCTGGTAGAGACGGGCCGCGTCAAGCT
CGTCTACACCAACACGCACGACGACCGAGTCTGGGGCGTGTGCGGCGCCA
ACGCCGGCGTGGCGCGCTGGCTCCGAGAAGATCGTGGAGGCCCTGGTCCG
AGACAAGTTTCGTCGGAACGCTAAGGCGAGGGAGGTTCTGGTAGAGACGG
GCCGCGTCAAGCTCGTCTACACCAACACGCACGACGACCGAGTCTGGGGC
GTGTGCGGCGGCAAGGGTGACAACAAGCTCGGCAAGCTGCTGGAGCGGGT
CCGGGCGGACGCCCTCGCCGGCAAGGACACGGAGGTGTGGTGCGCCATGC
GCTTTGAGCTGGCGCTGCCGCTGGACGTGGAGGTAGCCCTGGCGGTGTCG
AAAGCCGGTCAGATCGTGGCGGAGCCCTCGTTCGAGGGCAAACCGATCAT
CAGGATGGGTAAGGCAAGGGTGACAACAAGCTCGGCAAGCTGCTGGAGCG
GGTCCGGGCGGACGCCCTCGCCGGCAAGGACACGGAGGTGTGGTGCGCCA
TGCGCTTTGAGCTGGCGCTGCCGCTGGACGTGGAGGTAGCCCTGGCGGTG
TCGAAAGCCGGTCAGATCGTGGCGGAGCCCTCGTTCGAGGGCAAACCGAT
CATCAGGATGGGTAAG
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