mRNA_S-firma_F_contig1035.496.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1035.496.1
Unique NamemRNA_S-firma_F_contig1035.496.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: D8LBQ0_ECTSI (Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ0_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 9.090e-143
Identity = 234/305 (76.72%), Postives = 254/305 (83.28%), Query Frame = 2
Query:   44 MYEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAV-------------AARSPTAVAXXAAP-------SRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            MY+ F+TL +S PA  VLHVQINRP+K NAMNA+FWIE R+CF  I+ED D+RAVVVSG+G+HFSAGLDL+DT+NFDAIG ATKDVARRAFRFRKLALAMQESF+AVERCPQPVIAAIHGACVGGAVDLACACD+RLCSEDA FC+AEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEA+ MGFVSRVV    AA              A   P AV XX          S+RA+VVAAS+L ASEIARQSPVAVFGTKRNL+YARDHSV DGLEYAATWSGAALQAGDL  AM A
Sbjct:    1 MYDGFETLFVSFPARYVLHVQINRPSKRNAMNAKFWIECRDCFQLISEDADVRAVVVSGMGDHFSAGLDLSDTTNFDAIGRATKDVARRAFRFRKLALAMQESFTAVERCPQPVIAAIHGACVGGAVDLACACDIRLCSEDAGFCVAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEASRMGFVSRVVAAPEAATXXXXXXXXXXXXTAGGKPRAVXXXXXXXXXXXRRSQRAEVVAASILTASEIARQSPVAVFGTKRNLLYARDHSVVDGLEYAATWSGAALQAGDLSTAMRA 305          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A6P8I096_ACTTE (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I096_ACTTE)

HSP 1 Score: 265 bits (677), Expect = 2.320e-82
Identity = 148/282 (52.48%), Postives = 187/282 (66.31%), Query Frame = 2
Query:   56 FDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSN-FDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            ++TL++S PA  VL V++NRP K NAMN  FW E  ECF++I  D+D R VVV+G G+ F+AGLDL D +  F   G    D AR+A   RK+ L+ QESFS +E+CP+PVIAAIH AC+GG VDL CACD+RLCS DA F I EV +GLAADVGTLQR+PKIVGN+SL REL+YT R   A EA   G VS +                     P +   +++A+  MAS+IA +SPVAV GTK NL Y+RDHSV +GL Y ATW+ + LQ  D+  A+ A
Sbjct:   50 YETLAVSQPADHVLRVELNRPEKRNAMNQAFWREMVECFNKITNDSDCRXVVVTGAGKIFTAGLDLMDMAGVFMQAGPENADAARKAAELRKIILSYQESFSVIEKCPKPVIAAIHSACIGGGVDLVCACDIRLCSSDAWFQIKEVDIGLAADVGTLQRLPKIVGNDSLVRELSYTARRLPANEAKEAGLVSHIY--------------------PDKE-SLISAATAMASKIASKSPVAVMGTKHNLNYSRDHSVEEGLNYMATWNMSMLQTEDIMKAVQA 310          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A7D9IU21_PARCT (Delta(3,5)-Delta(2,4)-dienoyl- isomerase, mitochondrial n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IU21_PARCT)

HSP 1 Score: 259 bits (662), Expect = 3.110e-80
Identity = 146/294 (49.66%), Postives = 186/294 (63.27%), Query Frame = 2
Query:   17 VFHDNRGSMMYEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            VF     S     F+TL ++ P   V  V INRP K NAMN  FW E   CF++IA DT+ RAVV+SG G+ F+AGLDL D ++     +  +DV+RRA+  RK  L  QESFS +E+CPQPVIAAIH ACVGG VD+ CACD+R C+ DA F + EV++GLAADVGTLQR+PKIVGNESL REL YT R   + EA + G VSR+                        R  ++ ++L +AS IA+ SPVAV GTK NL Y+RDH V + LEY A+W+ + LQ  D+  A+ A
Sbjct:   29 VFISRMMSTQEYKFETLEVTKPRDHVFQVNINRPEKRNAMNQTFWSEMVTCFNKIATDTECRAVVLSGAGKIFTAGLDLMDMASVIMSQQDDQDVSRRAYNMRKTILQFQESFSVIEKCPQPVIAAIHSACVGGGVDMICACDIRWCTSDAWFQVKEVELGLAADVGTLQRLPKIVGNESLVRELCYTSRKLMSEEAKSFGLVSRIF---------------------QDRESLIDSALDLASHIAKMSPVAVSGTKHNLNYSRDHPVDESLEYIASWNMSMLQTDDILKAVQA 301          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A3S1BDV2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BDV2_ELYCH)

HSP 1 Score: 258 bits (660), Expect = 7.270e-80
Identity = 142/282 (50.35%), Postives = 189/282 (67.02%), Query Frame = 2
Query:   53 DFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            +F TL + SPA  V HV++NRP ++NAMN  FW E  ECF ++AED D R V++SG G+ F++GLDLAD   F  I  A +D +R+AF+  K     QESFSA+E+CP+PVIAA+H AC+GG +D+  ACD+R C++DA F I EV VGLAADVGTLQR P+IVGN+SL REL YT R F + EA ++GFVSRV+                       +  ++  +L MAS IA +SPVAV G+K NL+Y+RDHSV +GL+Y A W+   LQ+ D+  A +A
Sbjct:   47 EFKTLKVHSPAEFVKHVELNRPERLNAMNMDFWREMVECFDKLAEDEDCRVVILSGSGKAFTSGLDLADNGLFQII-MADEDCSRKAFKMNKAIPKFQESFSAIEKCPKPVIAAVHSACIGGGIDMISACDIRFCTQDAWFQIKEVDVGLAADVGTLQRFPRIVGNDSLTRELVYTARKFYSDEAKSIGFVSRVLVD---------------------KDQMMKTALDMASTIAAKSPVAVQGSKINLVYSRDHSVPEGLDYNAKWNITMLQSEDVMKAASA 306          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A835YKC1_9STRA (Peroxisomal enoyl-coenzyme A hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC1_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.880e-79
Identity = 141/282 (50.00%), Postives = 186/282 (65.96%), Query Frame = 2
Query:   47 YEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLAD----TSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDL 880
            Y  F+TL++    P VLHV++NRP + NAMNAQ+W E R  F  IA D ++RAVV+SG G+HFSAG+D+      T N  +      DVAR A + ++L L+MQESF+ + RCPQPVIAAIHGAC+GGAVDL  ACD+R CS+ A F + EV VGL ADVGTLQR+P++VGN+S  R++ Y+ RTFGAAEA   G VS+V +                      R  ++AA++  A+ IA  SP+AV GTKR+L +++DHSV DGL + A W+ AAL   DL
Sbjct:    5 YVGFETLAVRVAVPHVLHVELNRPNRANAMNAQYWHEMRRLFAAIAVDPEVRAVVISGAGKHFSAGIDMQPGQQPTGNLLSGPGKNSDVARHALKLQQLVLSMQESFTCITRCPQPVIAAIHGACMGGAVDLITACDMRFCSDCALFSVKEVAVGLCADVGTLQRLPRVVGNQSWVRDICYSARTFGAAEAKEFGLVSKVCS--------------------GGREGILAAAMEAAAVIAAHSPLAVTGTKRSLEWSQDHSVADGLAHVALWNSAALMTKDL 266          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: UPI001F04F430 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F430)

HSP 1 Score: 256 bits (654), Expect = 4.220e-79
Identity = 142/287 (49.48%), Postives = 186/287 (64.81%), Query Frame = 2
Query:   38 SMMYEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            S++  DF+TL ++ P   V  V INRP K NAMN  FW E   CF +IA ++D R VV+S  G+ F+AGLDL D S+   + +  KDV+R+A+  RK  +  QESFS +ERCPQPVIAAIH ACVGG VD+ C+CD+R C+ DA F I EV++GLAADVGTLQR+PKIVGNESL REL +T R F A EA + G VSR+                        +  ++  +L +AS IA+ SP+A+ GTK+NL Y+RDH V + LEY ATW+ + LQ  D+  A+ A
Sbjct:   32 SLLNHDFETLELTQPRNHVYQVNINRPEKRNAMNQTFWKEMVTCFEKIANESDCRVVVLSAAGKIFTAGLDLMDFSSI-VLQQDDKDVSRKAYNMRKTIVQCQESFSVIERCPQPVIAAIHSACVGGGVDMICSCDIRWCTSDAWFQIKEVELGLAADVGTLQRLPKIVGNESLVRELCFTARKFMAEEAKSFGLVSRIF---------------------QDKESLLNGALDLASHIAKMSPIAITGTKKNLNYSRDHGVDESLEYMATWNMSMLQTEDILKAVQA 296          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A3Q2EFD2_CYPVA (Enoyl-CoA hydratase 1 n=6 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3Q2EFD2_CYPVA)

HSP 1 Score: 255 bits (652), Expect = 8.950e-79
Identity = 142/275 (51.64%), Postives = 183/275 (66.55%), Query Frame = 2
Query:   56 FDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDL 880
            F TL++S PA  V HVQ++RP K+NAMN  FW E  ECF+ I+ED D R VVVSG G+ F+AG+DL D +  D +     D AR A+  RKL    QE+FS +E+CP+PV+ A+HGAC+GG VDL  ACD+RLC++DA F + EV +GLAADVGTLQR+PK++G+ SL  ELA T R   A EA + G VSRV                     P + A ++A +L MA EIA +SPVAV GTK NLIY+RDHSV +GL+Y ATW+ + LQ  D+
Sbjct:   37 FTTLAVSRPAEAVTHVQLHRPKKLNAMNKAFWREMVECFNEISEDQDCRVVVVSGAGKMFTAGIDLMDMAG-DMLQPEGDDAARVAWNVRKLVAKYQETFSVIEKCPKPVLVAVHGACIGGGVDLITACDIRLCTQDAWFQVKEVDIGLAADVGTLQRLPKVIGSRSLVNELALTARKMYADEAKSSGLVSRVF--------------------PDKDA-MMAGALEMAGEIAARSPVAVQGTKLNLIYSRDHSVAEGLDYMATWNMSMLQTQDV 289          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A6M5KEJ4_9DINO (Dienoyl coA isomerase n=1 Tax=Gambierdiscus pacificus TaxID=439314 RepID=A0A6M5KEJ4_9DINO)

HSP 1 Score: 254 bits (648), Expect = 1.370e-78
Identity = 143/290 (49.31%), Postives = 184/290 (63.45%), Query Frame = 2
Query:   41 MMYEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLAD----TSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAA 898
            M Y  ++TL ++     +LHV++NRP K+NAMN +FW E RECF   AEDT+ RA+V+S  G  FS+GLDL+D     S   A G+  +D  R A+R R+  L  QESF+A+E CPQPVI   HGA VGG +DL C C +R  S DA F I EV +GLAADVGTLQR+PKI+GNE   RELAYT R F A EA  +GF++R+                        R   +AA++ +A EIA++ P+AV GTKR L + R+HSV DGLEY ATW+GA +Q+ DL  A AA
Sbjct:    1 MQYGPYETLRVTKEDG-ILHVELNRPQKLNAMNRRFWQETRECFSAAAEDTEARAIVISAQGRAFSSGLDLSDMAPPASEEPASGKPKRDAGRLAYRIRREVLHTQESFNAIEACPQPVIVVGHGAVVGGGIDLMCTCCIRYASRDAWFTIKEVDIGLAADVGTLQRLPKIIGNEGAVRELAYTARKFTAEEALALGFLTRLF---------------------DTRDQALAAAMSLAKEIAQKPPLAVVGTKRMLDFTRNHSVQDGLEYVATWNGAMMQSPDLATAAAA 268          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A672H238_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H238_SALFA)

HSP 1 Score: 254 bits (650), Expect = 3.770e-78
Identity = 141/275 (51.27%), Postives = 181/275 (65.82%), Query Frame = 2
Query:   56 FDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDL 880
            + TL++S PAP V HV+I+RP K NAMN  FW E  ECF  I+ED D RAVVVSG G+ F+AG+D+ D +  + +     D AR ++  RK     QESFSA+ERCP+PV+ AIHGACVGG VDL  ACD+RLC++DA F + EV +GLAADVGTLQR+PK++G+ SL  ELA T R   A EA + G VSRV                        +A ++A +L MA EIA +SPVAV GTK NL+Y+RDHSV +GL++ A W+ + LQ  DL
Sbjct:   61 YTTLAVSRPAPAVTHVEIHRPDKRNAMNKAFWREMVECFSEISEDQDCRAVVVSGAGKTFTAGIDIVDLAG-EVLQPRGDDTARISYNIRKTITHFQESFSAIERCPKPVLVAIHGACVGGGVDLITACDIRLCTQDAWFQVKEVDIGLAADVGTLQRLPKVIGSRSLVNELALTARKMYADEAKSSGLVSRVF---------------------QHKAALMAGALEMAEEIAGRSPVAVQGTKINLLYSRDHSVEEGLQFMAAWNMSMLQTADL 313          
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Match: A0A672GLS1_SALFA (BED-type domain-containing protein n=10 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GLS1_SALFA)

HSP 1 Score: 254 bits (650), Expect = 7.810e-78
Identity = 141/275 (51.27%), Postives = 181/275 (65.82%), Query Frame = 2
Query:   56 FDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAEDTDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALAMQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEVKVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVTPAAAAVAARSPTAVAXXAAPSRRADVVAASLLMASEIARQSPVAVFGTKRNLIYARDHSVGDGLEYAATWSGAALQAGDL 880
            + TL++S PAP V HV+I+RP K NAMN  FW E  ECF  I+ED D RAVVVSG G+ F+AG+D+ D +  + +     D AR ++  RK     QESFSA+ERCP+PV+ AIHGACVGG VDL  ACD+RLC++DA F + EV +GLAADVGTLQR+PK++G+ SL  ELA T R   A EA + G VSRV                        +A ++A +L MA EIA +SPVAV GTK NL+Y+RDHSV +GL++ A W+ + LQ  DL
Sbjct:   85 YTTLAVSRPAPAVTHVEIHRPDKRNAMNKAFWREMVECFSEISEDQDCRAVVVSGAGKTFTAGIDIVDLAG-EVLQPRGDDTARISYNIRKTITHFQESFSAIERCPKPVLVAIHGACVGGGVDLITACDIRLCTQDAWFQVKEVDIGLAADVGTLQRLPKVIGSRSLVNELALTARKMYADEAKSSGLVSRVF---------------------QHKAALMAGALEMAEEIAGRSPVAVQGTKINLLYSRDHSVEEGLQFMAAWNMSMLQTADL 337          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1035.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ0_ECTSI9.090e-14376.72Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ect... [more]
A0A6P8I096_ACTTE2.320e-8252.48delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A7D9IU21_PARCT3.110e-8049.66Delta(3,5)-Delta(2,4)-dienoyl- isomerase, mitochon... [more]
A0A3S1BDV2_ELYCH7.270e-8050.35Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A835YKC1_9STRA2.880e-7950.00Peroxisomal enoyl-coenzyme A hydratase n=1 Tax=Tri... [more]
UPI001F04F4304.220e-7949.48delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A3Q2EFD2_CYPVA8.950e-7951.64Enoyl-CoA hydratase 1 n=6 Tax=Cyprinodontoidei Tax... [more]
A0A6M5KEJ4_9DINO1.370e-7849.31Dienoyl coA isomerase n=1 Tax=Gambierdiscus pacifi... [more]
A0A672H238_SALFA3.770e-7851.27Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A672GLS1_SALFA7.810e-7851.27BED-type domain-containing protein n=10 Tax=Salari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1035contigS-firma_F_contig1035:2886..7284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBQ0
Preferred nameECH1
PFAMsECH_1
Max annot lvl2759|Eukaryota
KEGG koko:K12663
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051750,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
Evalue2.33e-145
EggNOG OGsKOG1681@1|root,KOG1681@2759|Eukaryota
Descriptiondelta3,5-delta2,4-dienoyl-CoA isomerase activity
COG categoryS
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionperoxisomal enoyl-coenzyme A hydratase
Ec32 orthologEc-27_003160.1
Exons4
Model size1302
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1035.496.1prot_S-firma_F_contig1035.496.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1035 3185..7244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.387074-UTR-S-firma_F_contig1035:2885..31841622815566.387074-UTR-S-firma_F_contig1035:2885..3184Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 2886..3184 -
1696949420.6197667-UTR-S-firma_F_contig1035:2885..31841696949420.6197667-UTR-S-firma_F_contig1035:2885..3184Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 2886..3184 -
1622815566.44746-UTR-S-firma_F_contig1035:7244..72841622815566.44746-UTR-S-firma_F_contig1035:7244..7284Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 7245..7284 -
1696949420.6928291-UTR-S-firma_F_contig1035:7244..72841696949420.6928291-UTR-S-firma_F_contig1035:7244..7284Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1035 7245..7284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.3978384-CDS-S-firma_F_contig1035:3184..36491622815566.3978384-CDS-S-firma_F_contig1035:3184..3649Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 3185..3649 -
1696949420.652639-CDS-S-firma_F_contig1035:3184..36491696949420.652639-CDS-S-firma_F_contig1035:3184..3649Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 3185..3649 -
1622815566.4114635-CDS-S-firma_F_contig1035:4753..49451622815566.4114635-CDS-S-firma_F_contig1035:4753..4945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 4754..4945 -
1696949420.6631148-CDS-S-firma_F_contig1035:4753..49451696949420.6631148-CDS-S-firma_F_contig1035:4753..4945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 4754..4945 -
1622815566.422936-CDS-S-firma_F_contig1035:6150..62721622815566.422936-CDS-S-firma_F_contig1035:6150..6272Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 6151..6272 -
1696949420.6724198-CDS-S-firma_F_contig1035:6150..62721696949420.6724198-CDS-S-firma_F_contig1035:6150..6272Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 6151..6272 -
1622815566.4340677-CDS-S-firma_F_contig1035:7060..72441622815566.4340677-CDS-S-firma_F_contig1035:7060..7244Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 7061..7244 -
1696949420.681425-CDS-S-firma_F_contig1035:7060..72441696949420.681425-CDS-S-firma_F_contig1035:7060..7244Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1035 7061..7244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1035.496.1

>prot_S-firma_F_contig1035.496.1 ID=prot_S-firma_F_contig1035.496.1|Name=mRNA_S-firma_F_contig1035.496.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=321bp
MMYEDFDTLSISSPAPCVLHVQINRPAKVNAMNAQFWIEFRECFHRIAED
TDLRAVVVSGIGEHFSAGLDLADTSNFDAIGEATKDVARRAFRFRKLALA
MQESFSAVERCPQPVIAAIHGACVGGAVDLACACDVRLCSEDARFCIAEV
KVGLAADVGTLQRMPKIVGNESLCRELAYTGRTFGAAEAATMGFVSRVVT
PAAAAVAARSPTAVAVAAAPSRRADVVAASLLMASEIARQSPVAVFGTKR
NLIYARDHSVGDGLEYAATWSGAALQAGDLGVAMAAAAAGKSSSRRSTRN
RGAGSGAGAGVDLNPRFSKL*
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mRNA from alignment at S-firma_F_contig1035:2886..7284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1035.496.1 ID=mRNA_S-firma_F_contig1035.496.1|Name=mRNA_S-firma_F_contig1035.496.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4399bp|location=Sequence derived from alignment at S-firma_F_contig1035:2886..7284- (Sphaerotrichia firma ET2_F female)
CTCTGCTGGTTTGGTCGTGTTTCATGACAACCGAGGAAGCATGATGTACG AAGACTTCGACACGCTGAGTATCTCTTCGCCGGCACCATGTGTGCTGCAC GTTCAAATAAACCGCCCGGCCAAGGTCAACGCAATGAACGCACAGTTTTG GATAGAGTTCAGAGAGTGCTTCCACCGCATCGCAGAGGATACGGACCTGC GTGCGGTGGTGGTGTCGGGAATAGGTGAGAGAGTATTGCTTGCGTTTGAT TGGTTGGATACCACGTGCTAGCATTGGTACAAGACGGGCGCGTAGTCTGT GGTCGGAAGGTATTGAAAGGGTCGGAAACTTCAAACTACAAACACTCTGT GCGGATTCGGTAATGTGCCGCATTTTTTAAAAACCAAAGCGGGCCATCGT CGACGCCTGTAGATTATGCTGCTGCTGGGAACTCACGTGATAGGCCGTGC ACGAGGGAAGTCCACAAGAGTAAGCCTTATAGCATGCTCGCCGCTGCTCC TGCTTCTGACGCTGCTCTTGCTGCTCCTGCTGCTGATACCAAATGCTGAC AGCACAGCTAAATTTACATGCAGTCGAGCGAGTGGTGATCTGGTATCTAG ACTACATGTATTAGTTTCTTGCCGCACCGAGCGACTCCGCCTGGAGCGTA TCGTGTGGTAGCCACAACCACGAACCACCTACAACAATAAGAAGGGAGTT GCGCGGGGAGTCATTCGTCATGGCTGCACATGCGCACGGGGAGCGGTACG GTAGCGCTGAGACCGCTCAAAAATGGATCGATGGTTAGATGGTCACCGCC ACGACGCCAAGAACAAATGCCAAGGAACAAATGACTCACACCAGCGGCAA CAGCACCCCGGCAGAAAGAAGTAACGCCTCCCTCGCTAGTGTTTTCGTCT TGCTGCACACAGCACACCACACCACGGTATAGAACCCACGCCCCAACCCC TTCTCGAGTCATCGCTCTATACCGCCTCCCTCTGCCGCATTAATCGACCA CGATCACGTCAGGGGAACACTTCTCGGCCGGGTTGGATCTGGCCGACACG AGCAACTTTGATGCGATCGGGGAGGCGACGAAAGACGTGGCCCGACGAGC GTTTCGTTTCCGCAAGCTGGCCTTGGCGATGCAGGTGCGTGATTTGTTGG AATACAGAGCATCAACTGTACGACATGAAGTATATCGCGTAGATATAGGT ACGACTGTACACGTTCGGTTGCAAGTGTACGTAGTTCGGTGTAACGTGTG ACGGTTGGTATATACAGAGTGGATATACCACATACCATATGGGCGATTTG ATTGTTCAGAGGAGATATAGCGAGAGTTGGAGTGTGTCAGGGCCCCACTG CCCTCACTCCCCAACTCTCCCTCTTACCAGATCTCAACCAAAAGTTGTAA CTGAGCAAGGCTCACCTAATTGTAAGTCCCAGAAGCGGCATTTAGACAAC ATCAATGGGTCTCCACATCCTGGTCTCACCGACCAGTGCTCCAACTCTGT GAGCGTGTACATACAGCAGTATGCTGATTACACTTGCCACCACTGCCAAC ATTATATGAGCCCAACACAATCTGGCAACACGCAGCCCAGATATCTAACA TGATTCACCAGTGTCTACAGTTCGATGAGACTAGGGCGCGCGTGTCGGCG AAGGTGTCATCTACAATTTCCGCAGCAGGTTGTTGCCTACTACTGTTCAA AGCCAGCACCACCAACAGCTACAACTCAGTACGAAGGTCAAAATTATTTC CTTTGAAACGTCGCCGTGGAAATCAAAACAGCACTGACGACTATCTGACA CGCCGACCGCTCCTCGGGCTGGATACAGCACTATCATTCCATGTACGCGA GAGATACAGCACGGTAACGAGCACATAGCTATGCAGTGAAATCGATTTTG AGATCAAATCAAGCGTCGGCAGGAAACGACCGCTTGTTGACTGCTCGTGT CAAGAATGTTTGGGGCGGGGGAACACGCGAGGTTTTGAACAAACGACTTG CCACAGCAATACATAAGTTAGACGAATGCGAGGGTCCTCTTCCCGCAACG CTCGGCTGTTTATTCTACACAGCCGTGCACCGCGACTGGTCCCCGTACCT GGCTGACAGTTCAACCACAGAACGACAACCTCCATAGGGCAAAGCCTGCA CAGCTGCACAGCGTTCGGTGAAGAGCAGAGTCCCTATGCCCCCCCCCACT TTCCCTCTTGCCCTCCACCCTAATCAACTCTCGACCCCTGCCGTCTCCGT GACGCTTACCTCCCTGATCGTTCGGCCATCCAACTGTGGGAATCGGGACA AAACACAACAATCCACACTGAAATCGAACAAATCGTCAGGAGTCTTTCTC GGCAGTGGAGCGCTGCCCTCAGCCTGTCATCGCGGCGATTCACGGGGCGT GCGTCGGAGGGGCCGTGGACCTGGCGTGCGCGTGCGACGTGAGACTCTGC TCCGAGGACGCTCGGTTCTGCATCGCGGAGGTGAAGGTCGGTTTGGCCGC GGACGTCGGGACGCTGCAAAGGATGCCCAAGGTTCGTGCATGCGTGCCTG CGTGCATACATATGTGCGGCGGGGATTTCGCTTGTACGACAAACATGCGC GCAACCACCTTAAGGCCGCACAATCGCTCCAGCGTCAGCGGACCACATTT CTATTTACCAGCTGGGGGCAATTTTTTATCTTGATTTTAGAGGCTCCAAC TTCTGGGTGTGGTCGAGATTGGCCCAATTTAAAAAAAAAAATTGCCCCGT GCCCTTGGCCCCAACCCTAGAAAGTACATCATAGGGTTAGTCAAAAGAGT CGACATAGCTGATGAGCGGTTGTCAAATGGATCCATGTGCGTCGAGCAGC GGTGCGCAGAAAAAGCGTTTTTAGCGACTTTGAGAGACTATTGTCTGCTG TAAAAACACAACAAAAAGGCGGTTGAATTCGGACCTCCGGTTGTGGCGAC GCACGCCGCAACTCTCACGCGCAACGAGAGGTTACGAGAAGATACACGCC CACTTTGAATAGTGTATTGGAGCAAGCACCGACCACCACAGCAGTGGTCA AAGCCCGGTGTTGGAATGGCAGCGACGTTTGTCACTTGGAAATGTTTTAC AGCGGTAGGTTTGGTGCTGTAAGCAGTTGTATACGGATTGAGCTCTAGTA GGCGCCTTGTGGCAGCGTCAGAGAAACGAAGGCTACGCGAATGTAGCTGA TGTCCTGAGGCTTCCATATGGTATATACTCAGGTTGGGGCCAAGGAGACT CGGCGATTCATTTCAGCCCCGTCCCGCTTAGTTGTGTCCTTGTTAGAATG GAGAAAAGGCGCCCAAAAATAGGTTAGGCCGCGTATAACGTTTTGATTTC TTTTACCCATCACGCAATGGTCCGAAAGCATGCCTCCTCGTATTTTGCTC TTTTCCTTAGCCGCCTGTGAATGTGCTGCCTTAAAAACAAAAACTTATGC TAGTACTACTGTGCAAGTGTTGTTGTTACCCACTCAGTCTCCCTTGACGG TGGTCTCGATGAAAGATTTGACCACGCTTGGCTGACGGGGCCGAAATGTA TCTAAACAACAACGACGCCAACACCACCCACACGAACACGCACATACGTC GCTGAGCACATCCGACCAAAAAACGAATCGCGCAGATCGTGGGCAACGAG TCGCTGTGCCGGGAGCTCGCCTACACCGGGCGGACGTTCGGAGCGGCCGA GGCCGCGACGATGGGGTTCGTCTCTCGCGTTGTCACCCCCGCCGCCGCCG CCGTTGCCGCTAGGTCTCCCACCGCGGTAGCGGTAGCAGCGGCGCCGTCC CGCCGCGCAGACGTAGTCGCCGCCTCGCTCCTCATGGCCTCGGAGATCGC CAGGCAAAGCCCGGTCGCCGTCTTCGGCACCAAGCGGAACCTCATCTACG CCAGGGACCACAGCGTGGGCGACGGGCTGGAGTATGCGGCGACGTGGAGC GGCGCGGCGCTGCAGGCCGGAGACTTGGGGGTGGCCATGGCGGCTGCGGC GGCGGGAAAATCGTCTTCGAGAAGAAGCACCAGAAACAGAGGGGCGGGAA GCGGGGCTGGGGCCGGAGTGGATTTGAACCCTCGATTCTCGAAGTTGTAG CGGATTTGGGGCGGGCGCTGGCGCTGTGGTAGTTGCAGGAGTGTCTAAAG GGGGTCGTTGGAAGGGAGGCTTGCGGTGGGCGCTTCGAAACGATACACAC GTAGCACAGCCTTTCGCCGATCGCTCCGGTGGCCTAGTGGTGTAACCTCG AACCCGCTAGCAGCAAAGTCTCGAGGTCAATATCCAAGCAAAGGTGATTA TTTTGCGACTTTGCCGGTGAAATTGATAACAAACCTGAAAAGCTCGTGAG TACAAACTTCGACTTATACTAGCACGTTGACGAGGAAAGGGACGGCCGA
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Coding sequence (CDS) from alignment at S-firma_F_contig1035:2886..7284-

>mRNA_S-firma_F_contig1035.496.1 ID=mRNA_S-firma_F_contig1035.496.1|Name=mRNA_S-firma_F_contig1035.496.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1926bp|location=Sequence derived from alignment at S-firma_F_contig1035:2886..7284- (Sphaerotrichia firma ET2_F female)
ATGATGTACGAAGACTTCGACACGCTGAGTATCTCTTCGCCGGCACCATG
TGTGCTGCACGTTCAAATAAACCGCCCGGCCAAGGTCAACGCAATGAACG
CACAGTTTTGGATAGAGTTCAGAGAGTGCTTCCACCGCATCGCAGAGGAT
ACGGACCTGCGTGCGGTGGTGGTGTCGGGAATAGATGATGTACGAAGACT
TCGACACGCTGAGTATCTCTTCGCCGGCACCATGTGTGCTGCACGTTCAA
ATAAACCGCCCGGCCAAGGTCAACGCAATGAACGCACAGTTTTGGATAGA
GTTCAGAGAGTGCTTCCACCGCATCGCAGAGGATACGGACCTGCGTGCGG
TGGTGGTGTCGGGAATAGGGGAACACTTCTCGGCCGGGTTGGATCTGGCC
GACACGAGCAACTTTGATGCGATCGGGGAGGCGACGAAAGACGTGGCCCG
ACGAGCGTTTCGTTTCCGCAAGCTGGCCTTGGCGATGCAGGGGAACACTT
CTCGGCCGGGTTGGATCTGGCCGACACGAGCAACTTTGATGCGATCGGGG
AGGCGACGAAAGACGTGGCCCGACGAGCGTTTCGTTTCCGCAAGCTGGCC
TTGGCGATGCAGGAGTCTTTCTCGGCAGTGGAGCGCTGCCCTCAGCCTGT
CATCGCGGCGATTCACGGGGCGTGCGTCGGAGGGGCCGTGGACCTGGCGT
GCGCGTGCGACGTGAGACTCTGCTCCGAGGACGCTCGGTTCTGCATCGCG
GAGGTGAAGGTCGGTTTGGCCGCGGACGTCGGGACGCTGCAAAGGATGCC
CAAGGAGTCTTTCTCGGCAGTGGAGCGCTGCCCTCAGCCTGTCATCGCGG
CGATTCACGGGGCGTGCGTCGGAGGGGCCGTGGACCTGGCGTGCGCGTGC
GACGTGAGACTCTGCTCCGAGGACGCTCGGTTCTGCATCGCGGAGGTGAA
GGTCGGTTTGGCCGCGGACGTCGGGACGCTGCAAAGGATGCCCAAGATCG
TGGGCAACGAGTCGCTGTGCCGGGAGCTCGCCTACACCGGGCGGACGTTC
GGAGCGGCCGAGGCCGCGACGATGGGGTTCGTCTCTCGCGTTGTCACCCC
CGCCGCCGCCGCCGTTGCCGCTAGGTCTCCCACCGCGGTAGCGGTAGCAG
CGGCGCCGTCCCGCCGCGCAGACGTAGTCGCCGCCTCGCTCCTCATGGCC
TCGGAGATCGCCAGGCAAAGCCCGGTCGCCGTCTTCGGCACCAAGCGGAA
CCTCATCTACGCCAGGGACCACAGCGTGGGCGACGGGCTGGAGTATGCGG
CGACGTGGAGCGGCGCGGCGCTGCAGGCCGGAGACTTGGGGGTGGCCATG
GCGGCTGCGGCGGCGGGAAAATCGTCTTCGAGAAGAAGCACCAGAAACAG
AGGGGCGGGAAGCGGGGCTGGGGCCGGAGTGGATTTGAACCCTCGATTCT
CGAAGTTGTAGATCGTGGGCAACGAGTCGCTGTGCCGGGAGCTCGCCTAC
ACCGGGCGGACGTTCGGAGCGGCCGAGGCCGCGACGATGGGGTTCGTCTC
TCGCGTTGTCACCCCCGCCGCCGCCGCCGTTGCCGCTAGGTCTCCCACCG
CGGTAGCGGTAGCAGCGGCGCCGTCCCGCCGCGCAGACGTAGTCGCCGCC
TCGCTCCTCATGGCCTCGGAGATCGCCAGGCAAAGCCCGGTCGCCGTCTT
CGGCACCAAGCGGAACCTCATCTACGCCAGGGACCACAGCGTGGGCGACG
GGCTGGAGTATGCGGCGACGTGGAGCGGCGCGGCGCTGCAGGCCGGAGAC
TTGGGGGTGGCCATGGCGGCTGCGGCGGCGGGAAAATCGTCTTCGAGAAG
AAGCACCAGAAACAGAGGGGCGGGAAGCGGGGCTGGGGCCGGAGTGGATT
TGAACCCTCGATTCTCGAAGTTGTAG
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