mRNA_S-firma_F_contig10345.492.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10345.492.1
Unique NamemRNA_S-firma_F_contig10345.492.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10345.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10345contigS-firma_F_contig10345:516..978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.1076777-UTR-S-firma_F_contig10345:515..5401622815566.1076777-UTR-S-firma_F_contig10345:515..540Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10345 516..540 +
1696949420.4560428-UTR-S-firma_F_contig10345:515..5401696949420.4560428-UTR-S-firma_F_contig10345:515..540Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10345 516..540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.117326-CDS-S-firma_F_contig10345:540..9781622815566.117326-CDS-S-firma_F_contig10345:540..978Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10345 541..978 +
1696949420.4748566-CDS-S-firma_F_contig10345:540..9781696949420.4748566-CDS-S-firma_F_contig10345:540..978Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10345 541..978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10345.492.1prot_S-firma_F_contig10345.492.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10345 541..978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10345.492.1

>prot_S-firma_F_contig10345.492.1 ID=prot_S-firma_F_contig10345.492.1|Name=mRNA_S-firma_F_contig10345.492.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=146bp
MLQRRGSGLLRSDATGRLDIGASGTSSGGGGGGIKAAPTSRDISASGTSA
GSGRAASRRFMSFNGRNKSGGAREIGPAKTGTDESAAGGEASTTATAAAS
HGAPTIETGSTAAAGGAHGVEAGGKEGRRERDGVGESVSGRSLEPS
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mRNA from alignment at S-firma_F_contig10345:516..978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10345.492.1 ID=mRNA_S-firma_F_contig10345.492.1|Name=mRNA_S-firma_F_contig10345.492.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=463bp|location=Sequence derived from alignment at S-firma_F_contig10345:516..978+ (Sphaerotrichia firma ET2_F female)
CACCAACACCCGCCAGTCCGTCCGCATGCTGCAGCGCCGGGGCTCCGGCC
TCCTCCGGTCGGACGCGACCGGCCGACTCGACATCGGCGCGAGCGGCACC
AGCAGCGGCGGCGGCGGCGGCGGCATCAAGGCCGCGCCCACCTCAAGAGA
CATCAGCGCCAGCGGCACAAGCGCCGGCAGCGGCCGCGCAGCGAGCCGCC
GCTTCATGAGCTTCAACGGCAGGAACAAGAGCGGCGGGGCTCGGGAGATC
GGCCCCGCCAAGACCGGGACCGATGAATCCGCCGCCGGCGGTGAGGCTAG
CACCACTGCCACCGCCGCCGCCAGCCACGGGGCCCCCACCATAGAAACCG
GCTCTACGGCTGCTGCGGGTGGTGCGCACGGAGTCGAAGCCGGGGGGAAG
GAAGGCCGGCGTGAACGTGACGGGGTAGGCGAGTCCGTTAGCGGCCGTTC
CCTGGAGCCGTCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10345:516..978+

>mRNA_S-firma_F_contig10345.492.1 ID=mRNA_S-firma_F_contig10345.492.1|Name=mRNA_S-firma_F_contig10345.492.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=876bp|location=Sequence derived from alignment at S-firma_F_contig10345:516..978+ (Sphaerotrichia firma ET2_F female)
ATGCTGCAGCGCCGGGGCTCCGGCCTCCTCCGGTCGGACGCGACCGGCCG
ACTCGACATCGGCGCGAGCGGCACCAGCAGCGGCGGCGGCGGCGGCGGCA
TCAAGGCCGCGCCCACCTCAAGAGACATCAGCGCCAGCGGCACAAGCGCC
GGCAGCGGCCGCGCAGCGAGCCGCCGCTTCATGAGCTTCAACGGCAGGAA
CAAGAGCGGCGGGGCTCGGGAGATCGGCCCCGCCAAGACCGGGACCGATG
AATCCGCCGCCGGCGGTGAGGCTAGCACCACTGCCACCGCCGCCGCCAGC
CACGGGGCCCCCACCATAGAAACCGGCTCTACGGCTGCTGCGGGTGGTGC
GCACGGAGTCGAAGCCGGGGGGAAGGAAGGCCGGCGTGAACGTGACGGGG
TAGGCGAGTCCGTTAGCGGCCGTTCCCTGGAGCCGTCCATGCTGCAGCGC
CGGGGCTCCGGCCTCCTCCGGTCGGACGCGACCGGCCGACTCGACATCGG
CGCGAGCGGCACCAGCAGCGGCGGCGGCGGCGGCGGCATCAAGGCCGCGC
CCACCTCAAGAGACATCAGCGCCAGCGGCACAAGCGCCGGCAGCGGCCGC
GCAGCGAGCCGCCGCTTCATGAGCTTCAACGGCAGGAACAAGAGCGGCGG
GGCTCGGGAGATCGGCCCCGCCAAGACCGGGACCGATGAATCCGCCGCCG
GCGGTGAGGCTAGCACCACTGCCACCGCCGCCGCCAGCCACGGGGCCCCC
ACCATAGAAACCGGCTCTACGGCTGCTGCGGGTGGTGCGCACGGAGTCGA
AGCCGGGGGGAAGGAAGGCCGGCGTGAACGTGACGGGGTAGGCGAGTCCG
TTAGCGGCCGTTCCCTGGAGCCGTCC
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