mRNA_S-firma_F_contig10338.480.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10338.480.1
Unique NamemRNA_S-firma_F_contig10338.480.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10338.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10338contigS-firma_F_contig10338:1598..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog55529.EKX31555
PFAMsEGF_CA,Ephrin_rec_like,VWA
Max annot lvl2759|Eukaryota
Evalue0.000177
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
COG categoryO
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.9330194-CDS-S-firma_F_contig10338:1597..19851622815564.9330194-CDS-S-firma_F_contig10338:1597..1985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10338 1598..1985 +
1696949419.6337962-CDS-S-firma_F_contig10338:1597..19851696949419.6337962-CDS-S-firma_F_contig10338:1597..1985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10338 1598..1985 +
1622815564.9464116-CDS-S-firma_F_contig10338:2155..23581622815564.9464116-CDS-S-firma_F_contig10338:2155..2358Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10338 2156..2358 +
1696949419.6476986-CDS-S-firma_F_contig10338:2155..23581696949419.6476986-CDS-S-firma_F_contig10338:2155..2358Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10338 2156..2358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10338.480.1prot_S-firma_F_contig10338.480.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10338 1598..2358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10338.480.1

>prot_S-firma_F_contig10338.480.1 ID=prot_S-firma_F_contig10338.480.1|Name=mRNA_S-firma_F_contig10338.480.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=197bp
CPRGQYQPLTGQSSISCTDCPRGFIGTTAGAASRSSCEACGPGGYEVARN
LCADCQPGTYQPLDAQDSPFACVGCPMGRFSNESGAGVVSECATCDPGSV
APPQSTSCTQCGPGTYSDGLAATCTPCPIVVVDCPTGEVSVDGGPCSPCA
PGTYATATSCDPCPAGRFSDTPRSTACTLCPPGTARGQPTATSSAMC
back to top

mRNA from alignment at S-firma_F_contig10338:1598..2358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10338.480.1 ID=mRNA_S-firma_F_contig10338.480.1|Name=mRNA_S-firma_F_contig10338.480.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=761bp|location=Sequence derived from alignment at S-firma_F_contig10338:1598..2358+ (Sphaerotrichia firma ET2_F female)
TGCCCACGGGGCCAGTACCAGCCCCTCACCGGGCAGTCCAGCATTTCATG
CACGGACTGCCCACGGGGTTTCATTGGTACCACCGCGGGCGCCGCCTCCC
GGTCGTCGTGCGAGGCGTGTGGCCCCGGCGGCTACGAGGTTGCCCGCAAC
CTGTGCGCCGACTGCCAGCCGGGGACGTATCAGCCGCTTGACGCCCAAGA
CTCCCCGTTTGCGTGCGTGGGTTGCCCCATGGGCCGGTTTTCCAACGAGT
CCGGCGCTGGCGTCGTGTCAGAGTGCGCCACATGCGACCCCGGGTCCGTG
GCCCCCCCGCAGTCCACGTCGTGCACGCAGTGTGGGCCTGGGACGTACTC
TGACGGCCTCGCCGCCACCTGCACGCCGTGCCCCATTGGTGTGTCTCTCG
TGCGCGCAGCCTGCCCCCACGTCCCTCACGGCGTGCATTGTGTGCAGGGC
GGTATGGTACGGCGGCCGCCGCGTTCAACGCTTCCCTGTGCACACCTTGC
GACCCTGGGTTCACCACGGTGTCCACTGGGTCGTCGTCCAAGACCGCCTG
CGTGCCAGTTGTTGTTGACTGCCCCACAGGGGAGGTGTCCGTCGACGGCG
GCCCCTGTTCGCCGTGCGCTCCGGGCACGTACGCTACGGCGACGTCGTGC
GACCCGTGCCCAGCGGGGCGGTTTTCGGACACGCCTCGCTCCACGGCTTG
CACGTTGTGTCCGCCAGGTACGGCGCGGGGTCAGCCCACCGCCACGTCGT
CGGCCATGTGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10338:1598..2358+

>mRNA_S-firma_F_contig10338.480.1 ID=mRNA_S-firma_F_contig10338.480.1|Name=mRNA_S-firma_F_contig10338.480.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1182bp|location=Sequence derived from alignment at S-firma_F_contig10338:1598..2358+ (Sphaerotrichia firma ET2_F female)
TGCCCACGGGGCCAGTACCAGCCCCTCACCGGGCAGTCCAGCATTTCATG
CACGGACTGCCCACGGGGTTTCATTGGTACCACCGCGGGCGCCGCCTCCC
GGTCGTCGTGCGAGGCGTGTGGCCCCGGCGGCTACGAGGTTGCCCGCAAC
CTGTGCGCCGACTGCCAGCCGGGGACGTATCAGCCGCTTGACGCCCAAGA
CTCCCCGTTTGCGTGCGTGGGTTGCCCCATGGGCCGGTTTTCCAACGAGT
CCGGCGCTGGCGTCGTGTCAGAGTGCGCCACATGCGACCCCGGGTCCGTG
GCCCCCCCGCAGTCCACGTCGTGCACGCAGTGTGGGCCTGGGACGTACTC
TGACGGCCTCGCCGCCACCTGCACGCCGTGCCCCATTGTGCCCACGGGGC
CAGTACCAGCCCCTCACCGGGCAGTCCAGCATTTCATGCACGGACTGCCC
ACGGGGTTTCATTGGTACCACCGCGGGCGCCGCCTCCCGGTCGTCGTGCG
AGGCGTGTGGCCCCGGCGGCTACGAGGTTGCCCGCAACCTGTGCGCCGAC
TGCCAGCCGGGGACGTATCAGCCGCTTGACGCCCAAGACTCCCCGTTTGC
GTGCGTGGGTTGCCCCATGGGCCGGTTTTCCAACGAGTCCGGCGCTGGCG
TCGTGTCAGAGTGCGCCACATGCGACCCCGGGTCCGTGGCCCCCCCGCAG
TCCACGTCGTGCACGCAGTGTGGGCCTGGGACGTACTCTGACGGCCTCGC
CGCCACCTGCACGCCGTGCCCCATTGTTGTTGTTGACTGCCCCACAGGGG
AGGTGTCCGTCGACGGCGGCCCCTGTTCGCCGTGCGCTCCGGGCACGTAC
GCTACGGCGACGTCGTGCGACCCGTGCCCAGCGGGGCGGTTTTCGGACAC
GCCTCGCTCCACGGCTTGCACGTTGTGTCCGCCAGGTACGGCGCGGGGTC
AGCCCACCGCCACGTCGTCGGCCATGTGCTTGTTGTTGACTGCCCCACAG
GGGAGGTGTCCGTCGACGGCGGCCCCTGTTCGCCGTGCGCTCCGGGCACG
TACGCTACGGCGACGTCGTGCGACCCGTGCCCAGCGGGGCGGTTTTCGGA
CACGCCTCGCTCCACGGCTTGCACGTTGTGTCCGCCAGGTACGGCGCGGG
GTCAGCCCACCGCCACGTCGTCGGCCATGTGC
back to top