mRNA_S-firma_F_contig10336.478.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10336.478.1
Unique NamemRNA_S-firma_F_contig10336.478.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10336.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10336contigS-firma_F_contig10336:1214..1909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size663
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10336.478.1prot_S-firma_F_contig10336.478.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10336 1364..1795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.821942-UTR-S-firma_F_contig10336:1213..13631622815564.821942-UTR-S-firma_F_contig10336:1213..1363Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10336 1214..1363 -
1696949419.5704868-UTR-S-firma_F_contig10336:1213..13631696949419.5704868-UTR-S-firma_F_contig10336:1213..1363Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10336 1214..1363 -
1622815564.859065-UTR-S-firma_F_contig10336:1795..19091622815564.859065-UTR-S-firma_F_contig10336:1795..1909Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10336 1796..1909 -
1696949419.6018755-UTR-S-firma_F_contig10336:1795..19091696949419.6018755-UTR-S-firma_F_contig10336:1795..1909Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10336 1796..1909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.8354766-CDS-S-firma_F_contig10336:1363..15861622815564.8354766-CDS-S-firma_F_contig10336:1363..1586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10336 1364..1586 -
1696949419.581286-CDS-S-firma_F_contig10336:1363..15861696949419.581286-CDS-S-firma_F_contig10336:1363..1586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10336 1364..1586 -
1622815564.8485737-CDS-S-firma_F_contig10336:1619..17951622815564.8485737-CDS-S-firma_F_contig10336:1619..1795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10336 1620..1795 -
1696949419.5940676-CDS-S-firma_F_contig10336:1619..17951696949419.5940676-CDS-S-firma_F_contig10336:1619..1795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10336 1620..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10336.478.1

>prot_S-firma_F_contig10336.478.1 ID=prot_S-firma_F_contig10336.478.1|Name=mRNA_S-firma_F_contig10336.478.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=133bp
MASISLWISIISRVPRSMPSNGNDRSLPVSNTSSHKPYVLVVKIRGQYGW
QCGCCCCCCYCCCCLHIKNHPHLPIQYLPLSEPLRTHPALDAAYFRGHRL
TYLKRRLITIKWTPRVGRAISYRPFFPFAFHQ*
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mRNA from alignment at S-firma_F_contig10336:1214..1909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10336.478.1 ID=mRNA_S-firma_F_contig10336.478.1|Name=mRNA_S-firma_F_contig10336.478.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=696bp|location=Sequence derived from alignment at S-firma_F_contig10336:1214..1909- (Sphaerotrichia firma ET2_F female)
TACGTACGTAGGCCTTTGCTCCTTAGGCGACTAAGAATTGAGTTTTATGC
TCGTTGCTCTCGCTTTGTCTAGTAAAAATAATTTCATTTGATGTTTTCTT
TTGTGTCGTCGTGAATGGCGTCCATTTCTCTGTGGATATCGATCATATCC
CGCGTGCCACGATCGATGCCTTCCAACGGAAACGATCGTTCTCTTCCCGT
GTCGAATACATCCAGCCACAAGCCGTATGTTCTTGTCGTGAAAATACGCG
GACAATACGGCTGGCAGTGTGGTTGTTGTTGTTGTTGTTGCTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTATTATTGTTGTTGTTGTCTTCACATTAA
AAACCATCCTCATCTCCCTATCCAGTACCTCCCTCTGTCTGAACCTCTCC
GTACACACCCAGCACTTGACGCGGCCTATTTCCGTGGTCACAGGCTAACA
TACCTAAAAAGAAGGTTAATTACAATAAAATGGACCCCAAGGGTCGGCAG
AGCGATAAGCTACAGGCCTTTTTTTCCATTTGCGTTTCATCAGTGAGAGA
ATAATGAGTGCCGTCTCCGCAACCTACAGGACGAGTAGGTAGTGTTGTTT
TGTTTTTTCAGCATGCAGCAGTTACTTTCGAAACGAGCATACAGTAGGGT
GCCCTCTATCGTGCCGGGTAGTGTCCAGAGGGAAAAGCGGCACTAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10336:1214..1909-

>mRNA_S-firma_F_contig10336.478.1 ID=mRNA_S-firma_F_contig10336.478.1|Name=mRNA_S-firma_F_contig10336.478.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=798bp|location=Sequence derived from alignment at S-firma_F_contig10336:1214..1909- (Sphaerotrichia firma ET2_F female)
ATGGCGTCCATTTCTCTGTGGATATCGATCATATCCCGCGTGCCACGATC
GATGCCTTCCAACGGAAACGATCGTTCTCTTCCCGTGTCGAATACATCCA
GCCACAAGCCGTATGTTCTTGTCGTGAAAATACGCGGACAATACGGCTGG
CAGTGTGGTTGTTGTTGTTGTTGTTGATGGCGTCCATTTCTCTGTGGATA
TCGATCATATCCCGCGTGCCACGATCGATGCCTTCCAACGGAAACGATCG
TTCTCTTCCCGTGTCGAATACATCCAGCCACAAGCCGTATGTTCTTGTCG
TGAAAATACGCGGACAATACGGCTGGCAGTGTGGTTGTTGTTGTTGTTGT
TGTTATTGTTGTTGTTGTCTTCACATTAAAAACCATCCTCATCTCCCTAT
CCAGTACCTCCCTCTGTCTGAACCTCTCCGTACACACCCAGCACTTGACG
CGGCCTATTTCCGTGGTCACAGGCTAACATACCTAAAAAGAAGGTTAATT
ACAATAAAATGGACCCCAAGGGTCGGCAGAGCGATAAGCTACAGGCCTTT
TTTTCCATTTGCGTTTCATCAGTGATTATTGTTGTTGTTGTCTTCACATT
AAAAACCATCCTCATCTCCCTATCCAGTACCTCCCTCTGTCTGAACCTCT
CCGTACACACCCAGCACTTGACGCGGCCTATTTCCGTGGTCACAGGCTAA
CATACCTAAAAAGAAGGTTAATTACAATAAAATGGACCCCAAGGGTCGGC
AGAGCGATAAGCTACAGGCCTTTTTTTCCATTTGCGTTTCATCAGTGA
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