mRNA_S-firma_F_contig1033.476.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1033.476.1
Unique NamemRNA_S-firma_F_contig1033.476.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1033.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1033contigS-firma_F_contig1033:19084..20622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.2689655-CDS-S-firma_F_contig1033:19083..192631622815564.2689655-CDS-S-firma_F_contig1033:19083..19263Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 19084..19263 -
1696949419.0426273-CDS-S-firma_F_contig1033:19083..192631696949419.0426273-CDS-S-firma_F_contig1033:19083..19263Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 19084..19263 -
1622815564.2790558-CDS-S-firma_F_contig1033:20511..206221622815564.2790558-CDS-S-firma_F_contig1033:20511..20622Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 20512..20622 -
1696949419.0543177-CDS-S-firma_F_contig1033:20511..206221696949419.0543177-CDS-S-firma_F_contig1033:20511..20622Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1033 20512..20622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1033.476.1prot_S-firma_F_contig1033.476.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1033 19084..20622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1033.476.1

>prot_S-firma_F_contig1033.476.1 ID=prot_S-firma_F_contig1033.476.1|Name=mRNA_S-firma_F_contig1033.476.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp
TGLLPTAGLHTTAMHISSSLPRWVLLFLGPSSPLLQQVSAPRYNAKTHKR
KCRREGARDVGKKRAVATATTSARHQRDVKPSGRKKRGRRLEEGTTR
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mRNA from alignment at S-firma_F_contig1033:19084..20622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1033.476.1 ID=mRNA_S-firma_F_contig1033.476.1|Name=mRNA_S-firma_F_contig1033.476.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1539bp|location=Sequence derived from alignment at S-firma_F_contig1033:19084..20622- (Sphaerotrichia firma ET2_F female)
ACGGGCTTGTTGCCAACCGCGGGCCTTCACACGACAGCTATGCACATAAG
TTCGTCGCTGCCGCGATGGGTCCTTCTTTTCTTGGGGCCTTCTTCGCCGC
TGCTCCAACAGGTGCGCGTTTTCGTCACGAGCTGGGAGTTTTTTGTTGTT
GGCGCTCTCTCTTCCCTCCCTTCCCTGACCGGCTTCCTCTTCCGCTCACA
CGTCCACTTGTTCGTCGGTTTTTGTGGGAGCATTACCGAGCGTTTGCGCT
AAGGGGATGGTTTGTTGTTGTTGTACATGCTGCTGCTCTCTGTCGTGGCT
GGAGTTTCGCCTGTGTAACGGCCTCGGTGCGCATTGAAATCGGTGAAACG
ACCTACCACCCTACCCGCCGTGTATCTCGCTTTCCATGCGCACGGACCTA
CTCTGTAGACTAGACCTGGAGGCTCGACTACATGCATTCATCGGTTTAGC
GGCATCCAAAGCAGTGGCGCCCCCCCATCTCTCCGTCACTCTTACGCACG
TTCCTGTCTGAGACCCTCAAACGATAAGAAATTGGCCTCAGTACACGTCG
TAAGACACGTGACAGGTGGTTGTGTGCGCTGTTGTTGTAAGAAAGTCCCG
CATGTGTGCGAAATGTGAAAGGCCGATGATACACACCGGCGCCGGTACTC
GCGCCCGTGAGAGATGCCACTCACGGTCTAGGCCACCACTTGTCTCGATT
GTCACAACACAGATTTTTCGAGTGAGGTTGGTGGCGAGATCCACACCGCC
CCGCTGTTCTGCGTGCATGCTGTGTTCGGTATCGCTCTGTAATGACATCG
GGACAGGACGAGGTTGTGAGTTTCGTGTGTGCGGGACAACCATCACACCG
CTATCTAGTTGTCGGTATAGGCCTCCAGCAGTGTCTTCCCCGTGCTGCTG
TATCTCGACTGGATTGAAAGACATGGACAGCGGTGTGGCTGACAGCAGAT
TGGTAGGGGTGCCACTTTCTCATCCTCTGTCCAACTCGCGGATCTTTCTG
ATTGTCTTTGGCATCGGCGGTGAGCGTGTGTGTGTGTGTCGGGCACTGCA
TATCAAACGCGTCCAGGTGTTGTAATTGTTGTGGTCGACGATACATTTGA
CCGCCCACGCCGTACCCCACCTCCAACACACCGCTGTATCTACCGATGCT
CTTGGGGATGATGCGGACGTCCACCTTGTGTGAATCGGCGGCAAAAAAAC
GGAGTATACCACATACAGCAGTGGGAGCCTATGATAATATACATGACCCG
GGGTCTTGCCTCTCCTGTGTCATCAAAAAGGCCAACTTCCTCTCGAGTCT
CGAAGAAAAGTACTGACGCGCGTGCCAATGCGTGATTGGACTGTTACATC
CGCCAGCAGGTAAGCGCCCCCCGCTACAACGCAAAGACGCATAAGCGAAA
GTGCCGACGCGAGGGGGCCCGGGACGTGGGGAAGAAGCGGGCCGTGGCGA
CGGCAACAACCTCGGCAAGACATCAAAGGGACGTCAAACCTAGCGGTAGG
AAGAAGCGGGGGCGGAGGCTGGAGGAGGGCACCACACGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1033:19084..20622-

>mRNA_S-firma_F_contig1033.476.1 ID=mRNA_S-firma_F_contig1033.476.1|Name=mRNA_S-firma_F_contig1033.476.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig1033:19084..20622- (Sphaerotrichia firma ET2_F female)
ACGGGCTTGTTGCCAACCGCGGGCCTTCACACGACAGCTATGCACATAAG
TTCGTCGCTGCCGCGATGGGTCCTTCTTTTCTTGGGGCCTTCTTCGCCGC
TGCTCCAACAGACGGGCTTGTTGCCAACCGCGGGCCTTCACACGACAGCT
ATGCACATAAGTTCGTCGCTGCCGCGATGGGTCCTTCTTTTCTTGGGGCC
TTCTTCGCCGCTGCTCCAACAGGTAAGCGCCCCCCGCTACAACGCAAAGA
CGCATAAGCGAAAGTGCCGACGCGAGGGGGCCCGGGACGTGGGGAAGAAG
CGGGCCGTGGCGACGGCAACAACCTCGGCAAGACATCAAAGGGACGTCAA
ACCTAGCGGTAGGAAGAAGCGGGGGCGGAGGCTGGAGGAGGGCACCACAC
GGGTAAGCGCCCCCCGCTACAACGCAAAGACGCATAAGCGAAAGTGCCGA
CGCGAGGGGGCCCGGGACGTGGGGAAGAAGCGGGCCGTGGCGACGGCAAC
AACCTCGGCAAGACATCAAAGGGACGTCAAACCTAGCGGTAGGAAGAAGC
GGGGGCGGAGGCTGGAGGAGGGCACCACACGG
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