mRNA_S-firma_F_contig10318.465.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10318.465.1
Unique NamemRNA_S-firma_F_contig10318.465.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A137PD44_CONC2 (DNA mismatch repair protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PD44_CONC2)

HSP 1 Score: 308 bits (790), Expect = 3.710e-89
Identity = 201/562 (35.77%), Postives = 307/562 (54.63%), Query Frame = 1
Query:    7 LDDSAVANLELLVNN-EGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPSLRPDQAFKAAKNLVDAV-DAARALSTLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGPLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMF 1680
            LD   ++NLE+LVNN +G  +GT+   LNHCL+  G+R  + W+  PL  +  I  R  A+ D+   D + ++ A+ +  R  G  DL  L+  +   ++  K     L  SG    +   +    ++     +   NL D   D A  L           AA+ G  +    PG D   D A   +   +      + + +A+     +   K++   +G   + LE+P   S  VP +F+ +GQ ++V RY  P L  L T+Y EA     +    A+ R+ + F +  +KW  M  C+A +DCL +L +   + G   P   P+F+    S  L  +    H CV ++G +    F+PND  LGGD P  ++LTGPNMGGKSTLLRQ+ +A+++AQ+G +VPA+    T+ D++FTR GA+D +L+ +STF VEL+ET+ ILK AT RSLVILDELGRGTST+DG A+A +   +LT  + C  LFSTHY  +T E+   P +++ HM C+ +P  + VTFLYK+  G    S+G+NVA +AG+P  +  +AE  ++ F
Sbjct:  671 LDGPTLSNLEVLVNNIDGSDEGTVHQLLNHCLSSFGKRKFRNWLCHPLKDIDHINQRLDAIEDI---DKSYELQAICN--RLQGFPDLQRLITRVHSKSIKVKDFLSVL--SGFNDAMKLFEDLKQIKLQLKSRLLINLCDKFPDLAHRLYEFDQAFDHEHAAKDGTIIPT--PGRDAEYDRANQNLSDVEEELKNYLEKIKAQ-----LKCPKIEYKHIGKELYQLEIPA--SKQVPVEFIKNGQTKAVKRYYTPVLRILVTKYNEAKEIQSNAADTALTRLCEVFDEDYDKWSEMVSCLATLDCLYSLYKSKSLMGE--PCTRPQFIDHPKS--LFEVKNLRHPCVVSQGKSD---FIPNDTTLGGDEPDMILLTGPNMGGKSTLLRQTCVAVIMAQLGCYVPASSYKSTIFDRIFTRIGANDNILAGQSTFMVELSETAKILKEATNRSLVILDELGRGTSTFDGYAIAFSSLHYLTTQVRCLGLFSTHYGMLTEEMKDQPNISIKHMKCLANPNQREVTFLYKLTPGACPKSYGMNVASMAGIPEEIISKAELAAQQF 1209          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A5J4YF32_9CHLO (DNA mismatch repair protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YF32_9CHLO)

HSP 1 Score: 307 bits (787), Expect = 1.230e-88
Identity = 222/595 (37.31%), Postives = 311/595 (52.27%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLTVSTKYPYDP----LMESGA----GAGVAPGDGTPSLRPDQAFKAAKNLVDAVDAARALSTLVSKKGTSK----------------AARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGP-----LVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPAT----QAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMF 1680
            M LD +A+ NLE+L +++GG  G+L   L++C T  G+RLL  W+ +PL  +A I  RQ AV DL + + A  V A       SG  DL   LA L    +      D     L E  A     A +A   G  +L  ++AFK  + ++ A+ +      L   KG  +                AA +G A+ +  PGVD   D+A   V+  +      + Q R +   G      +   TV    ++LE+P+AL  AVP DF + GQ +  VRY  P+L +L  ++ +A    +      +  ++ RF   A  W++    ++ +D L+AL   A   G   PMC P F+     G      +    A  H      G A+  +FVPND++LGG+ P  ++LTGPNMGGKSTLLRQ  LA ++AQ+GA VPA    LT  D +F R GA D ++S +STFFVEL ET+  L  AT  SLV LDELGRGT+T DGAA+A AV  HL+    CR LF+THY  +      DP VA+ HMGC ++P T    + VTFLY +  G    S+G+NVARLAGLP  + +RA + +R  
Sbjct:  655 MALDGAALQNLEVLESSQGGRTGSLMGALDNCTTPAGKRLLSQWLCRPLLHIADIAARQNAVQDLISPECAEAVGAARKAF--SGVGDLERSLARLNAAGLGGGMGRDAMKVVLYEDNAKRRVAAMIAGLRGLQTL--NEAFKGFQAVLPALASGLLQQLLTPGKGLPELDGPLDALERATDWHEAAASGRAIPR--PGVDKEYDDAEGRVKDKEADLAEYLDQIREQLGAGR----DLCYVTVNKDVNLLEIPQALQKAVPQDFELMGQRKGFVRYMNPSLRSLVKQHADALETRELALTGILQGLLARFASQAGLWQKAVKAMSELDALMALAYAAQFGGDGAPMCRPTFLDPHALGASQPAHVFEAKALRHPAA-GMGIASGGSFVPNDIQLGGEAPGFIVLTGPNMGGKSTLLRQVCLAALMAQVGAWVPADSLTLTPVDAIFVRMGAKDDVMSGQSTFFVELAETAAALNKATPASLVALDELGRGTATSDGAAIAAAVLEHLSAKTCCRGLFATHYHRLADAHEQDPKVAICHMGCSVEPGTDGGPEQVTFLYNLTNGACPKSYGVNVARLAGLPDEVINRAASFARQL 1238          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A023GP27_AMBTT (Putative mismatch repair atpase msh6 muts family (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GP27_AMBTT)

HSP 1 Score: 287 bits (735), Expect = 2.710e-84
Identity = 216/600 (36.00%), Postives = 290/600 (48.33%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAA-----------DVDALVDTMRRSG----GKDLVALLATLARLTVSTKYPYDPLMESGAG----AGVAP--GDGTPSLRPD------QAFKAAKNLVDAVDAARALSTLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIV----RIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGPLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDT---PRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCII------DPATQAVTFLYKMLEGVATSSFGINVARLAGLPLCDRAEAVSRMF 1680
            M LD   + NLE+L N  GG +GTL A ++ C T  G+RL Q W+  P   V  I DRQ AV DL      A           D++ L+  +   G    G       A L   T   K     L+++  G      VAP   D   SL               ++  D  +A          +   K  R   +      GVD   DEA   V+ A       + Q + R F       K      G +   +EVP++ +     D  +HGQ +   RY    +  L+     A    ++ Q AA+     RI + F     +W +   C+A++DCLL+L +++G        C P F+    S P + + A +H C+     AA    +PND+ LG      P   ++TGPNMGGKSTL+RQ+ L +++AQMGA VPA    LTL D++FTR GASDR+ S ESTFFVE+NETSTIL+HAT  SLV+LDELGRGTST DG ALA AV + L   I CRTLFSTHY  +       P V LAHM C++      DP  + + FLYK   G    S+G N A+LAG+PL    E + R F
Sbjct:  178 MILDGVCLQNLEVLRNPSGGTEGTLLATMDFCCTPFGKRLFQQWLCSPPCRVKLIEDRQRAVDDLLKYAEEAKKTRELLQSLPDLERLLSRIHGQGLARKGTSHPDQRAILYEDTAYNKRKIGNLLQALEGFRKTVKVAPLWADVLSSLTSSTLAGCVSVDSQQEHFPDLTEALEFFENAFDHEQAKKEGRVTPSA-----GVDADYDEAMRLVKTANKALQEYLAQ-QGRHFN-----CKATYVGTGKNRFQIEVPESSARYATSDHELHGQRKGFRRYYTSEVKRLAANLVSA----EEAQEAAVKDIMRRIFENFDHRRAQWEQAVRCIALLDCLLSLAQYSG--SLTSTSCTPHFLPTD-SEPCLRVKAGFHPCLLQHLGAA--TLIPNDLTLGDPESCPPLLALITGPNMGGKSTLMRQAGLLVIIAQMGARVPAEACELTLVDRIFTRLGASDRITSGESTFFVEVNETSTILRHATEHSLVLLDELGRGTSTHDGMALAHAVVKELAESICCRTLFSTHYHHLVESFRKHPAVHLAHMACMVEDENEEDPTEETIVFLYKCAAGPCPKSYGFNAAKLAGIPL----EVIRRAF 753          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A4P9ZY40_9FUNG (Muts domain V-domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZY40_9FUNG)

HSP 1 Score: 288 bits (738), Expect = 6.440e-83
Identity = 215/583 (36.88%), Postives = 295/583 (50.60%), Query Frame = 1
Query:    7 LDDSAVANLELLVNNEG------------GIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPSLRPDQAFKAAKN---LVDAVDAARALSTLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSG-PLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDTPRT-----LMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMFAA 1686
            +D   +ANLEL   +E             G  GTL+  LN C T  G+RL + WM  PL +   I +R   + DL       +  A +    RS    L  L   ++R+   T    D L+    G G      T       AF++A+    +    D ++ L+          A +    +    PGV+P  D     +   +      + + R      A+   K++   +G   + LEVPKA+   VP DF      ++V RY  P    L  R  E       V      R+ +RF  +  +W R    V+ +DCL+ L   A   G+  P C PEFV     G  ++ LT   H CV      A   F+PND  LGGD+P T     ++LTGPN GGKSTLLRQ+ LA+++AQ+G +VPA    L+  D++FTR GA D +L  +STF VEL+ETS IL+ AT RSLVILDELGRGTST+DG A+A AV  HL   +GC  LFSTHY  +T E+ + P V L HM C +DPA + VTFLYK++ GV   S+G+NVA +AG+P  + DRAE V+  F A
Sbjct:  371 MDGQTMANLELFQTSEDNSLTYLASTHAQGEAGTLFQLLNRCTTPFGKRLFRQWMCHPLRNPRQINERLDMIDDL-------NAQAPIRDELRSQLARLPDLERLISRVHAGTCRVRD-LLTVLRGFGDIQTLITDLRTQSAAFRSARFATLIQQCPDLSKPLAFFAQAFDHQVAEKESNIIPT--PGVEPQFDSVNEQMAEIEAEFAEYLKEQRR-----ALKCPKLEYRDLGKEVYQLEVPKAVK--VPADFTKLSATKAVNRYWTPVTQKLVRRLNEILETRGTVFRDIERRMYERFDQHYSQWLRAVRTVSELDCLVGLALCAQSLGS--PACRPEFVEPGPDGRSVLELTELRHPCVTE---TAGSDFIPNDTILGGDSPDTAQPSMILLTGPNAGGKSTLLRQTCLAVIMAQLGCYVPARRCRLSPVDRIFTRIGAHDDILRGQSTFMVELSETSKILREATPRSLVILDELGRGTSTFDGYAVAFAVLHHLATRVGCVGLFSTHYHALTREMAAHPQVRLMHMDCHVDPAHRDVTFLYKLVPGVCPKSYGMNVAGMAGIPRSVVDRAETVAEQFEA 931          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A2P6V9D4_9CHLO (DNA mismatch repair MSH6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9D4_9CHLO)

HSP 1 Score: 291 bits (744), Expect = 3.990e-82
Identity = 221/595 (37.14%), Postives = 292/595 (49.08%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPS--LRPDQAFKAAKNLVDAVDAARALSTLVSKKGTSKAARAGAALFKLPP----------------------------------GVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQD-VQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSES---GSGPLVSLTACWHVCVDNEGAAAPQA-FVPNDVRLGGD-TPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQA-----VTFLYKMLEGVATSSFGINVARLAGLP 1644
            M LD SA+ NLE+L N++GG++GTL A LN+C+T  GRR L+ W+ +PL  +  I  RQ AV+DL      A   A      R+  K +  L  +LAR+               AGAGV      P   L  D A K  K+   A+   + +   V+      A+ +   L +L                                    GVD A D A   ++  +      + + R R   G V  A V L+      HVLEVP+   + VP  +  H   +   RY  P L  L  + +EA    +D  Q   +  +++RF      W     C+A +D L++L   A      G MC P  +  S   G  P+       H      G A     FVPND+ LGG   P  ++LTGPNMGGKSTL+RQ  LA ++AQ+GA VPA    L+  D VF R GA DR++  +STFFVEL+ETS  L  AT  SLVILDELGRGTST DGAA+A AV  H T  +GCR +F+THY  ++    SDP VAL HMGC + PA +      VTFLY++  G    S+G NVARLAGLP
Sbjct:  717 MALDGSALENLEVLENSDGGVEGTLLAALNNCVTPAGRRRLRQWLCRPLYRIPDIAARQDAVADLMGPAEEAACAA------RALFKSVADLERSLARINA-------------AGAGVGSARDAPHVILYEDVAKKRVKSYAAALHGLQQIQDAVAGFQAISASLSSGLLLRLVTPGELFPDMLGALREMQAATNWEEAKESGRVDPARGVDEAYDAALEGIDAVEAELQRYLGEAR-RCVGGGVKVAYVSLNK---ESHVLEVPEG--ARVPSTWEAHAGKKGYKRYSSPELKEL-VKAREAAYEAKDRAQGDILQGMMRRFAGRKALWDAAVDCMAQLDALMSLAVAAAC--GSGTMCRPVLLPWSPADGGAPVFRARGLRHPA----GVAGRDGTFVPNDIELGGQGAPPFIVLTGPNMGGKSTLMRQVCLASLMAQVGAFVPADSLELSPADAVFVRMGARDRIMLGQSTFFVELSETSAALHRATPASLVILDELGRGTSTGDGAAIAAAVLDHFTASVGCRGMFATHYHHISDSHASDPRVALKHMGCAVTPAAEPGGLEEVTFLYRLTGGACPKSYGANVARLAGLP 1279          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A197KAA0_9FUNG (DNA mismatch repair protein Msh6 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KAA0_9FUNG)

HSP 1 Score: 284 bits (726), Expect = 1.950e-81
Identity = 207/578 (35.81%), Postives = 303/578 (52.42%), Query Frame = 1
Query:    7 LDDSAVANLELLVNN-EGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNA--------DVAA---DVDALVDTMRRSGGK--DLVALLATLARLTVSTKY--PYDPLMESGAGAGVAPGDGTPSLRPDQAFKAAKNLVDAVD--AARALSTLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGPLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMF 1680
            LD   ++NLE+  NN +G   GT+   LN C+T  G+RL + W+  PL S + I  R  AV DL           +  A   D++ +V  +     K  + + +L+T   L  +++    Y    +S   A V   D  P L     + A     +A D   A+A   ++   G ++   A   +      +D    +    V+R                    +   K+    +G   + LE+   ++  VP  +       S+ RY  P L AL T+ QEA      +      R+  +F +  + W +    +A +DCL +L + +   G+  P C PEFV    S  ++ L    H CV   G A+   F+PND  LGGDT   ++LTGPNMGGKSTLLRQ+ +A+++AQ+G +VPA    LT  D++FTR GA+D +L+ +STF VEL+ETS IL  AT RS+VILDELGRGTST+DG A+A +V   L+  IGC  LFSTHY T+T+E   DP VAL HM C +D A + VTFLYK+++GV   S+G+NVA +AG+P  + DRAE +++ F
Sbjct:  359 LDGQTLSNLEVFQNNGDGSETGTVLRLLNRCVTPFGKRLFRRWLCHPLRSSSAIGARLDAVEDLMRVPGFMELFEEKCARFPDLERIVSRIHAGSCKISEFLVVLSTFRTLVDTSRRLSSYTDQFKSKKLASVL--DELPDLTEHLNYFA-----EAFDHKVAQAEGDIIPHPGFAEDYDANNEVLN---NLDSQFAQLLDKVKRE-------------------LKTTKIVYKDLGKEIYQLEMSNKIT--VPKSWKKTSSTSSISRYYTPELMALVTKLQEARETKNAIMKELQGRLYAKFDENYKDWLKAVKIIAELDCLCSLSKSSSALGS--PSCRPEFVDNERS--VLELEGLRHPCVI-PGIASD--FIPNDTLLGGDTSNLILLTGPNMGGKSTLLRQTCVAIIMAQLGCYVPAEKCRLTPFDRIFTRIGANDNILAGQSTFMVELSETSKILSEATERSMVILDELGRGTSTFDGYAIAYSVLHELSTRIGCLGLFSTHYGTLTNEFERDPNVALKHMACQVDQANREVTFLYKLVDGVCEKSYGMNVAHMAGVPREIVDRAEEMAQEF 898          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A2P6TCE1_CHLSO (DNA mismatch repair MSH6 isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCE1_CHLSO)

HSP 1 Score: 288 bits (737), Expect = 3.270e-81
Identity = 227/618 (36.73%), Postives = 300/618 (48.54%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPSLRPD------QAFKAA-KNLVDAVDAARALSTLVSKKGTSKAARA----------GAALFKLPP-----------------GVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKA--------------------------LSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSES---GSGPLVSLTACWHVCVDNEGAAAPQA-FVPNDVRLGG-DTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQA-----VTFLYKMLEGVATSSFGINVARLAGLP 1644
            M LD +A+ NLE+L N+EGG  GTL A LN+C+T  GRR L+ W+ +PL  VA I  RQ AV+DL    VA D  A   T+     K +  L  +LAR+  +           G+GAG A       L  D      QA+ AA + L    DA +A   +     +    R           GAAL ++                   GVD A D A A + RA+      + + R RA    V   KV+  +V    HVLEVP+                             + VP  +      + V RY  P L  L    + A    +  Q   +  ++++F      W     C+A +D L++L   A      G MC P+ V  S   G  PL   T   H      G +     FVPND+ LGG +    ++LTGPNMGGKSTL+RQ  LA ++AQ+GA VPA    LT  D ++ R GA DR++  +STF VEL+ETS  L  AT  SLVILDELGRGTST DGAA+A AV  HLT  +GCR +F+THY  ++    SDP VA+ HM C + P T+      VTFLY++ +G    S+G NVARLAGLP
Sbjct:  734 MALDGAALENLEVLENSEGGAGGTLLAALNNCVTPVGRRRLRQWLCRPLYRVADIEARQDAVADLMG--VAEDAAATARTLF----KTVADLERSLARINAA-----------GSGAGAARDAAHVVLYEDVAKRRVQAYAAALRGLQKVQDAMQAFQAVAGDLRSELLRRLVTPGELFPDMGAALAEMQAATDWEEAAESGRVEPAEGVDEAYDAAVADIARAEQGLKDFLQEAR-RAVGAGV---KVQFVSVNKESHVLEVPEVGIPLGFVVFTIECKLLHXXXXXXXXXXKAGVPAAWEFASNKKGVKRYTCPELRELVKAREAAYDAKERAQGGILQGMMRQFAGRKALWDAAVDCMAQLDALMSLAVAAAC--GSGTMCRPKLVPWSPADGGAPLFRATGLRHPA----GVSGRDGTFVPNDITLGGSEVAPFVVLTGPNMGGKSTLMRQVCLAALVAQVGAFVPAESVELTPVDAIYVRMGARDRIMLGQSTFLVELSETSAALHRATPTSLVILDELGRGTSTGDGAAIAAAVLDHLTQSVGCRGMFATHYHHISDSHASDPRVAIKHMACAVTPPTEPGGHEEVTFLYRLTDGACPKSYGTNVARLAGLP 1324          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A835W7W8_9CHLO (DNA mismatch repair protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W7W8_9CHLO)

HSP 1 Score: 287 bits (735), Expect = 4.460e-81
Identity = 221/632 (34.97%), Postives = 319/632 (50.47%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVA-------------ADVDALV-----DTMRRSGGKDL-------------VALLATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPSLRPDQAFKAAKNLVDAVDAARALSTLVSKKGT---SKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFV-----------SESGSGPLVSLTACWH---VCVDNEGAAAPQAFVPNDVRLGGD--------TPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQA-----------------VTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVS 1671
            M L+ +A+ NLE+L N +GG  GTL + L+HC T  GRR L+ W+ +PL  V  IR RQ AV+ L    +A             +D++  +      T+    G+D              VA L    +   S       L ++ A  G + G G+  LR        + ++D    A+  + L + +G     +AA+ G A+ +   GVD A D A   +E A+      + + R+R         ++   +V    H+LEVP+AL++ + G+F + G  +   R+    L AL  + +EA    +   ++ + R+V +F  +   W  +   +A  D L++L   A      GPMC P  V           S SGSG ++   A  H   +   N GA     FVPNDVRLGG          P  ++L+GPNMGGKSTLLRQ+ LA +LAQ+GA VPA    L+  D +F R GA D +++ +STFF+EL ET+ +L  AT  SLV+LDELGRGT+T DGAA+A AV  HL   +GCR LF+THY  ++ E V D  VA+ HM C ++ A +                  VTFLY++ +G    S+G NVARLAGLP  +  RA AVS
Sbjct:  828 MALNGAALENLEILENGDGGSAGTLLSVLDHCTTPFGRRRLRQWLCRPLCRVGDIRLRQDAVAALMEGGLAEAAGQARKLLAGVSDLERAITRLHASTVEGGSGRDAAHVVLYEDAAKRKVAALTGALKDLRSAHAALGKLRDALAREGGSDG-GSVLLR--------RIVIDRCRPAQVEAALKAIEGACDWKEAAQTGRAVPEQ--GVDEAYDSALEGIEAAERQLQEHLKELRSR-----FNCRELTYVSVNKDSHLLEVPEALANKLGGEFHLCGNRKGYKRFTSNKLKALVAQREEAAEAKETALSSILARLVVKFVAHKALWVGLVEALADCDALMSLAAHALAPPDGGPMCRPSLVHPRRDGSGSSGSSSGSGAVLDAVALRHPAGISGRNNGA-----FVPNDVRLGGSGSGDDGSAAPPFILLSGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDALFVRIGARDSIMTGQSTFFIELAETAAMLARATPNSLVVLDELGRGTATLDGAAVAGAVLAHLAGAVGCRGLFATHYHHLSDEHVGDSRVAVMHMACAVEGAEEGAEGKAATEGKEHQGGEEVTFLYRLTQGACPKSYGTNVARLAGLPPSVVTRAAAVS 1438          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: UPI000B798C60 (DNA mismatch repair protein MSH6 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B798C60)

HSP 1 Score: 286 bits (731), Expect = 7.070e-81
Identity = 204/606 (33.66%), Postives = 306/606 (50.50%), Query Frame = 1
Query:    1 MGLDDSAVANLELLVNNE-GGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNAD-------------------VAADVDALVDTMRRSGGK----------DLVALLATL--ARLTVSTKYPYDPLMESGAGAGV----APGDGTPSLRPD-QAFKAAKNLVDAVDAARALSTLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSG-PLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGG-DTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPAT---QAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMFAA 1686
            M LD +A+ NLE+  NN  GG  GTL+A++NHC+T  G+RLL+TW+ +PL  +  I+DRQ AV+ L  A+                   + A + A  +   R+  K           L   +  L    L          ++ES     +     PG+G P +    + FK A + V+A ++ R +                        GVD   D A   V   +      + + R       +    +   TVG   ++LEVP+ L  ++P D+ +    +   RY  P++  L     ++    +    + + R++ RF ++ +KWR++    A +D L++L      +   GP C P  +  S S  P +S  +  H  + ++ +    AFVPND+ +GG D    ++LTGPNMGGKSTLLRQ  LA++LAQ+GA VPA    L+  D++F R GA D +++ +STF  EL+ET+ +L  ATR SLV LDELGRGTST DG A+A AV  H  H + CR +FSTHY  +  +   DP V+L HM C +       + VTFLY+++ G    S+G+NVARLAGLP  + ++A A SR F A
Sbjct:  667 MILDAAAMENLEIFENNRNGGSSGTLYAQMNHCVTAFGKRLLKTWLARPLYHLKSIKDRQDAVAGLRGANQPMALEFRKALSRLPDMERLLARICASSEANGRNSNKVILYEDAAKKQLQEFITALRGCELMAQACSSLCVILESVESRQLHHLLTPGEGLPDIHSILKHFKDAFDWVEANNSGRIIPH---------------------DGVDLEYDSACKKVREIESSLTKHLKEQRKL-----LGDTSISYVTVGKEAYLLEVPEHLRGSIPRDYELRSSKKGFYRYWTPSIKKLLGELSQSESEKESTLKSILQRLIGRFCEHHDKWRQLVSTTAELDVLISLA--IASDFYEGPACRPVIMGSSSSEVPQISAKSLGHPVLRSD-SLGKGAFVPNDISIGGSDGASFVLLTGPNMGGKSTLLRQVCLAVILAQVGADVPAGSFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVALDELGRGTSTSDGQAIAEAVLDHFVHEVQCRGMFSTHYHRLAVDYQKDPKVSLCHMACQVGTGVGEVEEVTFLYRLMPGACPKSYGVNVARLAGLPDSILEKAAAKSREFEA 1243          
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Match: A0A4P9XRE1_9FUNG (Muts domain V-domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XRE1_9FUNG)

HSP 1 Score: 281 bits (720), Expect = 7.200e-81
Identity = 208/580 (35.86%), Postives = 303/580 (52.24%), Query Frame = 1
Query:    7 LDDSAVANLELLVNN-EGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLTSVAGIRDRQLAVSDLCNADVAA------------DVDALVDTMRRSGG--KDLVALL---ATLARLTVSTKYPYDPLMESGAGAGVAPGDGTPSLR-PDQAFKAAKNLVDAVDAARALSTLVSKKGTSKAARAGAALFKLP-PGVDPALDEATAWVERAQXXXXXXVVQCRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSVVRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHCVAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGPLVSLTACWHVCVDNEGAAAPQAFVPNDVRLGGDTPRTLMLTGPNMGGKSTLLRQSALALVLAQMGAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATRRSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSELVSDPMVALAHMGCIIDPATQAVTFLYKMLEGVATSSFGINVARLAGLP--LCDRAEAVSRMF 1680
            +D   + NLE+  NN +GG +GTL+  LN C+T  G+R+ + W+  PL     I  R  AV +L N+D++             D++ +V  +       KDL  LL     L++L    K   +        A  A     P L+ P + F  A +            T+  ++G+            +P PGV+   D+        Q      + + R       + ++K+    +G   + LEVPK +   VP +F+   Q + V RY  P L +L   ++E       +     +R+  +F +Y + W R  +  A +DCLL L   A   G   P C PEFV E  S  L+ L    H CV   G AA   F+PND  LG D  R ++LTGPNMGGKSTLLRQ+ +A+++AQ+G +VPA    LT  D++FTR GA+D +++ +STF VEL+ETS IL  AT RSLVILDELGRGTST+DG A+A +V  +L   +GC  LFSTHY  +T E+ +D  + L HM C +D   + VTFLYK+ +G    S+G++VA +AG+P  +  RAE V++ F
Sbjct:  332 IDGQTLKNLEIFENNFDGGDEGTLFRLLNKCVTPFGKRMFKRWVCHPLRCSKAINARLDAVDEL-NSDMSLQGSTQKAMTRLPDLERMVSRVHAGTCRLKDLFRLLDAFTALSKLAAELKETCENKSMPRIAALCAR---FPDLQEPLEHFSTAFDR-----------TIAEREGSV-----------IPFPGVEKDYDDIEERARDIQERFQSYLEEQRRE-----LKSSKIIYRDIGKEVYQLEVPKNIK--VPTNFMRLSQTKVVNRYWSPTLRSLVREFEETKEIRNYILWCGGMRVYAKFDEYYDLWVRAVYVFAELDCLLGLAVCATTIGE--PCCRPEFVEEGPS--LLELEELRHPCVI-PGIAAD--FIPNDTMLGNDQARMILLTGPNMGGKSTLLRQTCIAIIMAQLGCYVPARRCRLTAVDRIFTRIGANDNIMAGQSTFMVELSETSKILHEATPRSLVILDELGRGTSTFDGYAIAYSVLHYLATYVGCLGLFSTHYGLLTEEMEADRNIRLMHMSCYVDEDRKEVTFLYKLTDGACPKSYGMHVANMAGVPTEIVLRAEEVAKEF 871          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10318.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137PD44_CONC23.710e-8935.77DNA mismatch repair protein n=1 Tax=Conidiobolus c... [more]
A0A5J4YF32_9CHLO1.230e-8837.31DNA mismatch repair protein n=1 Tax=Trebouxia sp. ... [more]
A0A023GP27_AMBTT2.710e-8436.00Putative mismatch repair atpase msh6 muts family (... [more]
A0A4P9ZY40_9FUNG6.440e-8336.88Muts domain V-domain-containing protein n=1 Tax=Di... [more]
A0A2P6V9D4_9CHLO3.990e-8237.14DNA mismatch repair MSH6 n=1 Tax=Micractinium cond... [more]
A0A197KAA0_9FUNG1.950e-8135.81DNA mismatch repair protein Msh6 n=1 Tax=Linnemann... [more]
A0A2P6TCE1_CHLSO3.270e-8136.73DNA mismatch repair MSH6 isoform B n=2 Tax=Chlorel... [more]
A0A835W7W8_9CHLO4.460e-8134.97DNA mismatch repair protein n=1 Tax=Chlamydomonas ... [more]
UPI000B798C607.070e-8133.66DNA mismatch repair protein MSH6 n=1 Tax=Hevea bra... [more]
A0A4P9XRE1_9FUNG7.200e-8135.86Muts domain V-domain-containing protein (Fragment)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10318contigS-firma_F_contig10318:940..2915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog78898.MVEG_07291T0
Preferred nameMSH6
PFAMsMutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
Max annot lvl4751|Fungi
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
Evalue3.43e-87
EggNOG OGsCOG0249@1|root,KOG0217@2759|Eukaryota,38DKA@33154|Opisthokonta,3NU39@4751|Fungi,1GSCD@112252|Fungi incertae sedis
DescriptionDNA mismatch repair
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size1686
Cds size1686
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10318.465.1prot_S-firma_F_contig10318.465.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10318 940..2915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.2942371-CDS-S-firma_F_contig10318:939..11111622815563.2942371-CDS-S-firma_F_contig10318:939..1111Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 940..1111 -
1696949418.2274275-CDS-S-firma_F_contig10318:939..11111696949418.2274275-CDS-S-firma_F_contig10318:939..1111Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 940..1111 -
1622815563.310217-CDS-S-firma_F_contig10318:1162..22121622815563.310217-CDS-S-firma_F_contig10318:1162..2212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 1163..2212 -
1696949418.2396445-CDS-S-firma_F_contig10318:1162..22121696949418.2396445-CDS-S-firma_F_contig10318:1162..2212Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 1163..2212 -
1622815563.3279614-CDS-S-firma_F_contig10318:2451..29151622815563.3279614-CDS-S-firma_F_contig10318:2451..2915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 2452..2915 -
1696949418.2492974-CDS-S-firma_F_contig10318:2451..29151696949418.2492974-CDS-S-firma_F_contig10318:2451..2915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10318 2452..2915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10318.465.1

>prot_S-firma_F_contig10318.465.1 ID=prot_S-firma_F_contig10318.465.1|Name=mRNA_S-firma_F_contig10318.465.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=562bp
MGLDDSAVANLELLVNNEGGIKGTLWARLNHCLTIPGRRLLQTWMLQPLT
SVAGIRDRQLAVSDLCNADVAADVDALVDTMRRSGGKDLVALLATLARLT
VSTKYPYDPLMESGAGAGVAPGDGTPSLRPDQAFKAAKNLVDAVDAARAL
STLVSKKGTSKAARAGAALFKLPPGVDPALDEATAWVERAQDELEAWVVQ
CRARAFPGAVAAAKVKLSTVGFSGHVLEVPKALSSAVPGDFVVHGQNQSV
VRYKVPALAALSTRYQEATMHLQDVQAAAIVRIVQRFTDYAEKWRRMGHC
VAVVDCLLALRRFAGVEGARGPMCVPEFVSESGSGPLVSLTACWHVCVDN
EGAAAPQAFVPNDVRLGGDTPRTLMLTGPNMGGKSTLLRQSALALVLAQM
GAHVPATCAHLTLCDKVFTRAGASDRLLSAESTFFVELNETSTILKHATR
RSLVILDELGRGTSTWDGAALALAVARHLTHGIGCRTLFSTHYTTVTSEL
VSDPMVALAHMGCIIDPATQAVTFLYKMLEGVATSSFGINVARLAGLPLC
DRAEAVSRMFAA
back to top

mRNA from alignment at S-firma_F_contig10318:940..2915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10318.465.1 ID=mRNA_S-firma_F_contig10318.465.1|Name=mRNA_S-firma_F_contig10318.465.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1976bp|location=Sequence derived from alignment at S-firma_F_contig10318:940..2915- (Sphaerotrichia firma ET2_F female)
ATGGGCTTGGACGACTCCGCGGTGGCCAACCTTGAGCTCCTCGTCAATAA CGAGGGCGGCATCAAGGGCACGTTATGGGCGAGGCTGAATCACTGCCTCA CCATCCCCGGCCGCCGCCTGCTGCAGACCTGGATGCTGCAGCCCCTGACG TCCGTGGCTGGCATTCGTGACCGCCAGCTTGCAGTAAGCGACTTGTGCAA CGCTGACGTTGCAGCAGACGTGGACGCGTTGGTGGACACCATGCGGCGCT CCGGTGGCAAAGACTTGGTGGCCCTGCTGGCGACCCTGGCCCGCCTCACA GTGAGCACCAAGTACCCTTACGACCCCCTCATGGAGTCGGGCGCGGGGGC AGGCGTCGCGCCTGGGGACGGCACGCCCTCCCTCCGCCCTGACCAAGCCT TCAAGGCCGCCAAGAACCTTGTGGACGCTGTGGATGCCGCCCGGGCGCTG TCTACCCTGGTGTCGTCACCGTTCACCCAACGCATAGTGGCCAGGGCCAA GTCCCCCCTGCTGCGCAGCATGCTGAGCTACGGTGACGGACTGTCGTCAG CAGGGTGCTTTCCAGACGCAACCGCCGAATTGGACACTCTTGAAAGCGTG AGTTTGAAGTGTGCCCCCCGCCCCCCCTCCCCCCCTTGCTTCACTGTTAT TATTCCCAGATAACCTCCTCGACGTCCGTCAAGGAAGCCGCCAAGGCAGC CAGCAAGAAGGGCACCTCCAAAGCCGCACGGGCGGGGGCGGCGCTGTTCA AGCTGCCTCCCGGCGTGGACCCTGCCCTGGACGAGGCGACGGCGTGGGTG GAGCGTGCCCAGGACGAGCTGGAGGCCTGGGTGGTGCAGTGCCGGGCAAG GGCGTTCCCAGGGGCGGTGGCGGCGGCCAAGGTAAAGCTGTCCACCGTGG GCTTCTCTGGGCACGTGCTGGAAGTCCCCAAGGCGCTGTCGTCCGCGGTG CCCGGCGACTTTGTTGTCCACGGCCAGAACCAGTCCGTGGTGCGGTACAA GGTGCCAGCGTTGGCGGCGCTGTCCACCCGGTACCAGGAGGCGACAATGC ACCTCCAAGACGTGCAGGCGGCGGCCATTGTGCGCATCGTGCAGCGGTTC ACGGACTACGCGGAGAAGTGGCGCCGCATGGGGCATTGCGTAGCGGTTGT GGACTGCTTGCTGGCCCTACGGCGGTTTGCGGGGGTGGAGGGCGCCAGGG GCCCCATGTGCGTCCCGGAATTTGTGTCGGAGTCAGGCAGCGGGCCGCTT GTGTCGCTCACCGCCTGCTGGCACGTTTGCGTCGACAACGAAGGCGCCGC CGCCCCGCAGGCGTTTGTCCCCAACGACGTCCGCCTGGGGGGCGACACGC CACGCACCCTCATGCTCACGGGGCCCAACATGGGGGGCAAGTCCACCCTC CTGCGGCAGTCCGCCCTGGCGCTGGTGCTGGCCCAAATGGGCGCCCACGT GCCGGCCACGTGCGCCCACCTCACCCTGTGCGACAAGGTGTTCACCCGGG CTGGTGCCTCGGACCGCCTCCTGTCCGCCGAGTCCACGTTTTTTGTGGAG CTCAACGAGACGTCCACCATTTTGAAGCACGCCACGAGGAGGAGCCTTGT GATTTTGGACGAGCTGGGGCGGGGGACGTCCACGTGGGACGGCGCTGCCC TGGCGTTGGCCGTCGCCCGCCACCTCACGCACGGCATCGGGTGCCGCACC CTGTTCTCCACGCACTACACGACAGTGACGTCGGAGTTGGTGTCTGACCC AATGTGAGTTTTGTGGGGGGGGGGTGTTCGTGCATTGTTAATGATTTTTT TCAGGGTGGCCCTTGCCCACATGGGGTGCATCATTGACCCCGCCACCCAA GCCGTCACCTTCTTGTACAAAATGCTGGAAGGGGTAGCCACCAGCTCATT TGGCATCAACGTTGCGCGGCTGGCGGGGTTGCCTCTGTGCGACCGCGCGG AGGCCGTGTCCCGCATGTTTGCCGCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10318:940..2915-

>mRNA_S-firma_F_contig10318.465.1 ID=mRNA_S-firma_F_contig10318.465.1|Name=mRNA_S-firma_F_contig10318.465.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3372bp|location=Sequence derived from alignment at S-firma_F_contig10318:940..2915- (Sphaerotrichia firma ET2_F female)
ATGGGCTTGGACGACTCCGCGGTGGCCAACCTTGAGCTCCTCGTCAATAA
CGAGGGCGGCATCAAGGGCACGTTATGGGCGAGGCTGAATCACTGCCTCA
CCATCCCCGGCCGCCGCCTGCTGCAGACCTGGATGCTGCAGCCCCTGACG
TCCGTGGCTGGCATTCGTGACCGCCAGCTTGCAGTAAGCGACTTGTGCAA
CGCTGACGTTGCAGCAGACGTGGACGCGTTGGTGGACACCATGCGGCGCT
CCGGTGGCAAAGACTTGGTGGCCCTGCTGGCGACCCTGGCCCGCCTCACA
GTGAGCACCAAGTACCCTTACGACCCCCTCATGGAGTCGGGCGCGGGGGC
AGGCGTCGCGCCTGGGGACGGCACGCCCTCCCTCCGCCCTGACCAAGCCT
TCAAGGCCGCCAAGAACCTTGTGGACGCTGTGGATGCCGCCCGGGCGCTG
TCTACCCTGGTGTCATGGGCTTGGACGACTCCGCGGTGGCCAACCTTGAG
CTCCTCGTCAATAACGAGGGCGGCATCAAGGGCACGTTATGGGCGAGGCT
GAATCACTGCCTCACCATCCCCGGCCGCCGCCTGCTGCAGACCTGGATGC
TGCAGCCCCTGACGTCCGTGGCTGGCATTCGTGACCGCCAGCTTGCAGTA
AGCGACTTGTGCAACGCTGACGTTGCAGCAGACGTGGACGCGTTGGTGGA
CACCATGCGGCGCTCCGGTGGCAAAGACTTGGTGGCCCTGCTGGCGACCC
TGGCCCGCCTCACAGTGAGCACCAAGTACCCTTACGACCCCCTCATGGAG
TCGGGCGCGGGGGCAGGCGTCGCGCCTGGGGACGGCACGCCCTCCCTCCG
CCCTGACCAAGCCTTCAAGGCCGCCAAGAACCTTGTGGACGCTGTGGATG
CCGCCCGGGCGCTGTCTACCCTGGTGTCCAAGAAGGGCACCTCCAAAGCC
GCACGGGCGGGGGCGGCGCTGTTCAAGCTGCCTCCCGGCGTGGACCCTGC
CCTGGACGAGGCGACGGCGTGGGTGGAGCGTGCCCAGGACGAGCTGGAGG
CCTGGGTGGTGCAGTGCCGGGCAAGGGCGTTCCCAGGGGCGGTGGCGGCG
GCCAAGGTAAAGCTGTCCACCGTGGGCTTCTCTGGGCACGTGCTGGAAGT
CCCCAAGGCGCTGTCGTCCGCGGTGCCCGGCGACTTTGTTGTCCACGGCC
AGAACCAGTCCGTGGTGCGGTACAAGGTGCCAGCGTTGGCGGCGCTGTCC
ACCCGGTACCAGGAGGCGACAATGCACCTCCAAGACGTGCAGGCGGCGGC
CATTGTGCGCATCGTGCAGCGGTTCACGGACTACGCGGAGAAGTGGCGCC
GCATGGGGCATTGCGTAGCGGTTGTGGACTGCTTGCTGGCCCTACGGCGG
TTTGCGGGGGTGGAGGGCGCCAGGGGCCCCATGTGCGTCCCGGAATTTGT
GTCGGAGTCAGGCAGCGGGCCGCTTGTGTCGCTCACCGCCTGCTGGCACG
TTTGCGTCGACAACGAAGGCGCCGCCGCCCCGCAGGCGTTTGTCCCCAAC
GACGTCCGCCTGGGGGGCGACACGCCACGCACCCTCATGCTCACGGGGCC
CAACATGGGGGGCAAGTCCACCCTCCTGCGGCAGTCCGCCCTGGCGCTGG
TGCTGGCCCAAATGGGCGCCCACGTGCCGGCCACGTGCGCCCACCTCACC
CTGTGCGACAAGGTGTTCACCCGGGCTGGTGCCTCGGACCGCCTCCTGTC
CGCCGAGTCCACGTTTTTTGTGGAGCTCAACGAGACGTCCACCATTTTGA
AGCACGCCACGAGGAGGAGCCTTGTGATTTTGGACGAGCTGGGGCGGGGG
ACGTCCACGTGGGACGGCGCTGCCCTGGCGTTGGCCGTCGCCCGCCACCT
CACGCACGGCATCGGGTGCCGCACCCTGTTCTCCACGCACTACACGACAG
TGACGTCGGAGTTGGTGTCTGACCCAATCAAGAAGGGCACCTCCAAAGCC
GCACGGGCGGGGGCGGCGCTGTTCAAGCTGCCTCCCGGCGTGGACCCTGC
CCTGGACGAGGCGACGGCGTGGGTGGAGCGTGCCCAGGACGAGCTGGAGG
CCTGGGTGGTGCAGTGCCGGGCAAGGGCGTTCCCAGGGGCGGTGGCGGCG
GCCAAGGTAAAGCTGTCCACCGTGGGCTTCTCTGGGCACGTGCTGGAAGT
CCCCAAGGCGCTGTCGTCCGCGGTGCCCGGCGACTTTGTTGTCCACGGCC
AGAACCAGTCCGTGGTGCGGTACAAGGTGCCAGCGTTGGCGGCGCTGTCC
ACCCGGTACCAGGAGGCGACAATGCACCTCCAAGACGTGCAGGCGGCGGC
CATTGTGCGCATCGTGCAGCGGTTCACGGACTACGCGGAGAAGTGGCGCC
GCATGGGGCATTGCGTAGCGGTTGTGGACTGCTTGCTGGCCCTACGGCGG
TTTGCGGGGGTGGAGGGCGCCAGGGGCCCCATGTGCGTCCCGGAATTTGT
GTCGGAGTCAGGCAGCGGGCCGCTTGTGTCGCTCACCGCCTGCTGGCACG
TTTGCGTCGACAACGAAGGCGCCGCCGCCCCGCAGGCGTTTGTCCCCAAC
GACGTCCGCCTGGGGGGCGACACGCCACGCACCCTCATGCTCACGGGGCC
CAACATGGGGGGCAAGTCCACCCTCCTGCGGCAGTCCGCCCTGGCGCTGG
TGCTGGCCCAAATGGGCGCCCACGTGCCGGCCACGTGCGCCCACCTCACC
CTGTGCGACAAGGTGTTCACCCGGGCTGGTGCCTCGGACCGCCTCCTGTC
CGCCGAGTCCACGTTTTTTGTGGAGCTCAACGAGACGTCCACCATTTTGA
AGCACGCCACGAGGAGGAGCCTTGTGATTTTGGACGAGCTGGGGCGGGGG
ACGTCCACGTGGGACGGCGCTGCCCTGGCGTTGGCCGTCGCCCGCCACCT
CACGCACGGCATCGGGTGCCGCACCCTGTTCTCCACGCACTACACGACAG
TGACGTCGGAGTTGGTGTCTGACCCAATGGTGGCCCTTGCCCACATGGGG
TGCATCATTGACCCCGCCACCCAAGCCGTCACCTTCTTGTACAAAATGCT
GGAAGGGGTAGCCACCAGCTCATTTGGCATCAACGTTGCGCGGCTGGCGG
GGTTGCCTCTGTGCGACCGCGCGGAGGCCGTGTCCCGCATGTTTGCCGCC
GGTGGCCCTTGCCCACATGGGGTGCATCATTGACCCCGCCACCCAAGCCG
TCACCTTCTTGTACAAAATGCTGGAAGGGGTAGCCACCAGCTCATTTGGC
ATCAACGTTGCGCGGCTGGCGGGGTTGCCTCTGTGCGACCGCGCGGAGGC
CGTGTCCCGCATGTTTGCCGCC
back to top