mRNA_S-firma_F_contig1030.447.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1030.447.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE) HSP 1 Score: 632 bits (1630), Expect = 4.660e-209 Identity = 467/909 (51.38%), Postives = 549/909 (60.40%), Query Frame = 2
Query: 266 GEQPSREALVASLSNDLEGPRRGQALHGLCDML--GDQGSRAAVAQALDSVSWELFGLVMGCLEQSVASCRISS----TGDGDKLSAAADT---PQQAEEIAALAEKLALELAEIFSPKELHIMALEHLHAYSEKRTVRTVLAVLRRSTQRMPPTRRAKFLEAALQPALKATKRV----AEGDTGSSRQGQDPDSSYDDDXXXXXXXXDGGGHPRGVSSXXXXXVAAEHEIASRAAYDAAASAAETAMEFAGPLVEQACAEREKLMRGPMEAAETGRRGECRSLGATSPAGVKKNGGAVESPVGWAGEDVSASDLSLAAYLGFALSALEIAAETSACAAXXXXXXXXXXXXXXIGAPSTLSVEEKSAAVEALAKAEERLVGLIVGGPVTAPFDLQFVLLHGCRLSYADHGKRRRE--EEGGEEGDXXXXXXXXXXXXXXAGLSAGCGGGLIGLAEAAVGGALPWALGGVSTVAYLVACRPKLREKWLPLVWSRRTERRLFLPHSEVLMRSKSKRIACKGLELACFVAERLGPFPDHAGAFAFEWESEDDEVDAWGGXXXXXXXXXXXXXXXXXXXXXXXR-------------------------------------------------------------RKPWDPHRFDLPAFLQVLVDVMVSCPLPALRARGHAALSALLGAAGETCRFRVLERLIDRCPWPNATGLLLDSFRREIDRALRQHRPRSDKVEEXXXXXXAGRLQGGGQEGRLRDDLPQRRSLPCEAPLAAAAAVPERVS---PFASALAGDFVSAQLRRACRKGPPASLMMDMDTRTGALTLARYAHALDFDGLGVG---------VWEGGRLKLHEPEKLRENRRL--GLLDELRGAAVTADSAGPEHFRLFILEDAAQQCLEELQ 2722
G+Q SRE LV+SL DL+GPR L GL DML G+Q V + LD+VSWE FGLV+GCLE+ S ++ TG +K S A+T + A++ AAL+E+LAL +AEIFSPKELH+MALEHLHAY++ RT+R VL +LRRSTQ+M RR KFLEA+L+PAL+ATKRV A GD + S D D XXXXXXX XXXX A+ ++ SRAAYDAAASAAETA +F GPL+EQA AE+ L + A G ++ ATS G + G+ E E VSASDLSLAAY+GFALSALE+A ETS C XXXXXXXXXX E+ A E+LA+A+ERLVG++V P+ DL+FVLLHG R+S+A KRRR+ E GGE+G+ L A GG +GL EAA+ GALPW L GVST+AYLVAC P+LR+KWLPLVWSRRTERRLFLPH+E LMR +SKR+A KGLELACFVAERLG FPD GAFAF+WE D+E+D G XXXXXXX R R+ +DPH DL FLQVLVDVMVSCPLP LR RGHAAL ALLGAA E RFRVL RL++ CPWPNA GLLLD+FRREIDRALRQ +EEXXXXXX +S PFASALAGD V QLRRACR+GP ASLM DMD+RTG L LARYAH LD G G W GRL+L EP+KL +N+ L GLLDELRGA +TAD+AGPEHFRLFILEDAAQQCL+EL+
Sbjct: 27 GQQCSREQLVSSLERDLQGPRVRATLQGLHDMLVDGEQNHSTPVGEVLDTVSWEAFGLVVGCLERFATSASSNNSDSITGTFEKSSDEAETLTTSRDADDCAALSERLALAMAEIFSPKELHLMALEHLHAYTKARTLRVVLTILRRSTQQMVTARRWKFLEASLRPALEATKRVGLVAAAGDAPAEPGLPQKSSGSDADEXXXXXXX-----XXXXXXXXXXLPTADEDMPSRAAYDAAASAAETAADFIGPLMEQASAEQALLAVSRVPTAGRGEGRPAAAVVATSAGGSGRAVGSGEK------EGVSASDLSLAAYIGFALSALELAGETSVCCTXXXXXXXXXXGS-----------EDNPPARESLARAQERLVGIVVDSPL----DLRFVLLHGYRVSFASGVKRRRKRSEGGGEKGESH--------------LPAAKLGGAVGLGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEALMRDRSKRVANKGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGDDXXXXXXXNGGGREEAHTPYGHTRTSAHNYEFYGCPDLLSHRYFTIFRPPPTPFHPFRRDVAAWQQRDADAGSSTISENTNPSSRRRLFDPHHLDLAGFLQVLVDVMVSCPLPGLRTRGHAALMALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQC-----GIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSSPFASALAGDVVCEQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAW--GRLELREPKKLLQNKLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELE 888
BLAST of mRNA_S-firma_F_contig1030.447.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI) HSP 1 Score: 566 bits (1459), Expect = 7.440e-186 Identity = 420/844 (49.76%), Postives = 489/844 (57.94%), Query Frame = 2
Query: 266 GEQPSREALVASLSNDLEGPRRGQALHGLCDML--GDQGSRAAVAQALDSVSWELFGLVMGCLEQSVASCRISS----TGDGDKLSAAADT---PQQAEEIAALAEKLALELAEIFSPKELHIMALEHLHAYSEKRTVRTVLAVLRRSTQRMPPTRRAKFLEAALQPALKATKRV----AEGDTGSSRQGQDPDSSYDDDXXXXXXXXDGGGHPRGVSSXXXXXVAAEHEIASRAAYDAAASAAETAMEFAGPLVEQACAEREKLMRGPMEAAETGRRGECRSLGATSPAGVKKNGGAVESPVGWAGEDVSASDLSLAAYLGFALSALEIAAETSACAAXXXXXXXXXXXXXXIGAPSTLSVEEKSAAVEALAKAEERLVGLIVGGPVTAPFDLQFVLLHGCRLSYADHGKRRRE--EEGGEEGDXXXXXXXXXXXXXXAGLSAGCGGGLIGLAEAAVGGALPWALGGVSTVAYLVACRPKLREKWLPLVWSRRTERRLFLPHSEVLMRSKSKRIACKGLELACFVAERLGPFPDHAGAFAFEWESEDDEVDAWGGXXXXXXXXXXXXXXXXXXXXXXXRRKPWDPHRFDLPAFLQVLVDVMVSCPLPALRARGHAALSALLGAAGETCRFRVLERLIDRCPWPNATGLLLDSFRREIDRALRQHRPRSDKVEEXXXXXXAGRLQGGGQEGRLRDDLPQRRSLPCEAPLAAAAAVPERVSPFASALAGDFVSAQLRRACRKGPPASLMMDMDTRTGALTLARYAHALDFDGLGVGVWEG--------GRLKLHEPEKLRENRRL--GLLDELRGAAVTADSAGPEHFRLFILEDAAQQCLEELQ 2722
G Q SREALV+SL DL+GPR L GL DML G+ RAAV + LD+VSWE FGLV+GCLE+ S +S TG +K S A+T + A++ AAL+E LAL +AEIFSPKELH+M LEHLHAY++ RTVR VL +LRRST+RM RR+KFLEA+L+PALKA KRV A GD + G SS D XXXXXXXX XXX A+ ++ S AAYDAAASAAETA +F GPL+EQA AER L + T RGE R A +G AV S E VSASDLSLAAY+GFALSALE+A ETS C XXXXX E+ AA E+LA+AEERL+G++V P+ DL+F LLHGCR+SYA KRRR E GGEEG L A GG +GLAEAAV GALPW L GVST+AYLVAC P+LR+KWLPLVWSRRTERRLFLPH+EVLMR +S+R+A KGLELACFVAERLG FPD +GA+AF+WE D+E+D G XXXXXX +VLVDVMVSCPLP LR RGHAAL A+L A E RFR+L RL++ CPWPN L RACR+GP ASLM DMD+RTG L LARYAH LD G G G GRL L EP+KL +NR L GLLDELRGA +TA++AGPEHFRLFILEDAAQQCL+EL+
Sbjct: 27 GLQCSREALVSSLERDLQGPRVRVTLQGLYDMLVDGEHSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFEKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTVRVVLTILRRSTERMATARRSKFLEASLRPALKAAKRVGLVAAAGDA-PAEPGLRQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXLLPTADGDMPSSAAYDAAASAAETAADFIGPLMEQASAERALLA---VSGLPTAGRGEGRPAAAAVAXXXGGSGHAVGSGEK---EGVSASDLSLAAYIGFALSALELAGETSVC-----------XXXXXXXXXXXTGSEDNPAAGESLARAEERLIGIVVDSPL----DLRFALLHGCRVSYASGVKRRRRKSEGGGEEGKSQ--------------LPAARLGGAVGLAEAAVNGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSRRVANKGLELACFVAERLGGFPDRSGAYAFDWEPGDEEIDGAGDDXXXXXXWNGGGRQ-------------------------EVLVDVMVSCPLPGLRTRGHAALVAILSGADEASRFRLLRRLVELCPWPN-----------------------------------------------------------------------------------------LLRACRRGPLASLMADMDSRTGGLALARYAHKLDAVG-GARADSGRAEAGAAWGRLGLREPKKLLQNRLLVQGLLDELRGAVITANNAGPEHFRLFILEDAAQQCLQELE 719 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1030.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1030.447.1 >prot_S-firma_F_contig1030.447.1 ID=prot_S-firma_F_contig1030.447.1|Name=mRNA_S-firma_F_contig1030.447.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=837bp MALPALRTAVESLGGGGEQPSREALVASLSNDLEGPRRGQALHGLCDMLGback to top mRNA from alignment at S-firma_F_contig1030:8121..13442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1030.447.1 ID=mRNA_S-firma_F_contig1030.447.1|Name=mRNA_S-firma_F_contig1030.447.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5322bp|location=Sequence derived from alignment at S-firma_F_contig1030:8121..13442+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1030:8121..13442+ >mRNA_S-firma_F_contig1030.447.1 ID=mRNA_S-firma_F_contig1030.447.1|Name=mRNA_S-firma_F_contig1030.447.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=5022bp|location=Sequence derived from alignment at S-firma_F_contig1030:8121..13442+ (Sphaerotrichia firma ET2_F female)back to top |