mRNA_S-firma_F_contig10292.429.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10292.429.1
Unique NamemRNA_S-firma_F_contig10292.429.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10292.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10292contigS-firma_F_contig10292:1979..2972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10292.429.1prot_S-firma_F_contig10292.429.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10292 2191..2691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.7167952-UTR-S-firma_F_contig10292:1978..21901622815559.7167952-UTR-S-firma_F_contig10292:1978..2190Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10292 1979..2190 +
1696949415.6002843-UTR-S-firma_F_contig10292:1978..21901696949415.6002843-UTR-S-firma_F_contig10292:1978..2190Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10292 1979..2190 +
1622815559.7410367-UTR-S-firma_F_contig10292:2691..29721622815559.7410367-UTR-S-firma_F_contig10292:2691..2972Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10292 2692..2972 +
1696949415.6239297-UTR-S-firma_F_contig10292:2691..29721696949415.6239297-UTR-S-firma_F_contig10292:2691..2972Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10292 2692..2972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.730989-CDS-S-firma_F_contig10292:2190..26911622815559.730989-CDS-S-firma_F_contig10292:2190..2691Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10292 2191..2691 +
1696949415.6130006-CDS-S-firma_F_contig10292:2190..26911696949415.6130006-CDS-S-firma_F_contig10292:2190..2691Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10292 2191..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10292.429.1

>prot_S-firma_F_contig10292.429.1 ID=prot_S-firma_F_contig10292.429.1|Name=mRNA_S-firma_F_contig10292.429.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
MLLLRTAVGGGGGGGGGAAGGGRLSGGSAAAASAPVHAAPPLESRFDTTG
LRRLSGEHRAEHDPHDGIFFVFFRLALSSPPGGVPDDRAAGLHPDTGLTR
GTGGGLLRVGALLRWLRQAARAPQALERPLQGLGGDEAVGLGVVVAGVWS
AAGLGGDSPVAVEEPQ*
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mRNA from alignment at S-firma_F_contig10292:1979..2972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10292.429.1 ID=mRNA_S-firma_F_contig10292.429.1|Name=mRNA_S-firma_F_contig10292.429.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=994bp|location=Sequence derived from alignment at S-firma_F_contig10292:1979..2972+ (Sphaerotrichia firma ET2_F female)
CCGCCTACGTCGACCTTTCTTCCCCGCCGGGAGCAGCGGGTTTGCCGGCG
CTCTCTTCGCCGTTCCTCGCCGTGCATGCTGAAAGCCAACGCGCTCCCGA
GGCATGAAGGGGAAAGCAAGGCAGGCACCGCTAGCAGGTCGTCAATCAGC
GCGTTGAACGCGTCGACGGTCCCCGTGCTGAGAACGGCGAGAAACTCTGT
CGTGTCGGAAAGATGCTTCTTCTTCGCACCGCTGTCGGTGGCGGTGGCGG
TGGCGGCGGCGGCGCTGCCGGTGGTGGTCGACTTTCCGGCGGCTCTGCCG
CCGCTGCTTCGGCGCCCGTCCACGCTGCCCCCCCCCTCGAGAGCAGGTTC
GACACCACGGGGCTCCGGCGCTTGAGCGGGGAGCATCGCGCTGAACACGA
CCCCCACGATGGAATCTTCTTCGTCTTCTTCCGCCTCGCGCTCTCGTCGC
CCCCGGGCGGCGTCCCCGACGACCGCGCGGCAGGCCTTCACCCTGACACG
GGGCTGACACGGGGTACCGGCGGCGGCCTTTTGCGCGTCGGGGCGCTTCT
CCGTTGGCTGCGGCAAGCGGCACGCGCACCCCAGGCTCTCGAGCGCCCTC
TGCAGGGTCTGGGCGGGGATGAGGCTGTCGGCCTCGGCGTCGTCGTCGCC
GGGGTCTGGTCCGCTGCCGGTCTCGGTGGCGACAGTCCCGTCGCTGTTGA
GGAGCCGCAGTGACAGCACAAGGCGCGTTGCCCCCAGCCGCCGAGCGACC
GAAATCGTCCCCGGCGTAGCCTTCGGCGCGCGAACCGGGCGAGAGGAGCA
GGGAGCGGCCGCGGAGGCGACGGGCCCGCTGGTGATGCTGCCGAAGCTGC
CGCCAGCGGCGGGCACGGGGACACTGCTTCCGGCGCCGAACTCATCCGCG
TAGCTTGACCCCGTCCGCCGCCCCACCGCGTCTCCTTCTCCCGTCTCCTC
CTCTCCCTCGCTCGGCGACGGACAGTCGTGGAAGGGGATGTCTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10292:1979..2972+

>mRNA_S-firma_F_contig10292.429.1 ID=mRNA_S-firma_F_contig10292.429.1|Name=mRNA_S-firma_F_contig10292.429.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig10292:1979..2972+ (Sphaerotrichia firma ET2_F female)
ATGCTTCTTCTTCGCACCGCTGTCGGTGGCGGTGGCGGTGGCGGCGGCGG
CGCTGCCGGTGGTGGTCGACTTTCCGGCGGCTCTGCCGCCGCTGCTTCGG
CGCCCGTCCACGCTGCCCCCCCCCTCGAGAGCAGGTTCGACACCACGGGG
CTCCGGCGCTTGAGCGGGGAGCATCGCGCTGAACACGACCCCCACGATGG
AATCTTCTTCGTCTTCTTCCGCCTCGCGCTCTCGTCGCCCCCGGGCGGCG
TCCCCGACGACCGCGCGGCAGGCCTTCACCCTGACACGGGGCTGACACGG
GGTACCGGCGGCGGCCTTTTGCGCGTCGGGGCGCTTCTCCGTTGGCTGCG
GCAAGCGGCACGCGCACCCCAGGCTCTCGAGCGCCCTCTGCAGGGTCTGG
GCGGGGATGAGGCTGTCGGCCTCGGCGTCGTCGTCGCCGGGGTCTGGTCC
GCTGCCGGTCTCGGTGGCGACAGTCCCGTCGCTGTTGAGGAGCCGCAGTG
AATGCTTCTTCTTCGCACCGCTGTCGGTGGCGGTGGCGGTGGCGGCGGCG
GCGCTGCCGGTGGTGGTCGACTTTCCGGCGGCTCTGCCGCCGCTGCTTCG
GCGCCCGTCCACGCTGCCCCCCCCCTCGAGAGCAGGTTCGACACCACGGG
GCTCCGGCGCTTGAGCGGGGAGCATCGCGCTGAACACGACCCCCACGATG
GAATCTTCTTCGTCTTCTTCCGCCTCGCGCTCTCGTCGCCCCCGGGCGGC
GTCCCCGACGACCGCGCGGCAGGCCTTCACCCTGACACGGGGCTGACACG
GGGTACCGGCGGCGGCCTTTTGCGCGTCGGGGCGCTTCTCCGTTGGCTGC
GGCAAGCGGCACGCGCACCCCAGGCTCTCGAGCGCCCTCTGCAGGGTCTG
GGCGGGGATGAGGCTGTCGGCCTCGGCGTCGTCGTCGCCGGGGTCTGGTC
CGCTGCCGGTCTCGGTGGCGACAGTCCCGTCGCTGTTGAGGAGCCGCAGT
GA
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