mRNA_S-firma_F_contig10284.419.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A6H5KXD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD7_9PHAE) HSP 1 Score: 554 bits (1428), Expect = 2.460e-186 Identity = 385/616 (62.50%), Postives = 413/616 (67.05%), Query Frame = 1
Query: 157 AILAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGGGGD----AGPGGLSLYQQIALGVLAAFFRDESLVKKFLPVAPALVRALRAAHATTQTQGLCDALYCVQALGDVPGGMERLLRAGAAPAVVSRLSAESGDRAAAXXXXXXXXXXXXXADEGAPSGGVEESKAGGVEETKQAPAPAXXXXXXXXXXCPRSS----------------------------SPNGLGGVSSAGPAEDGGDGPAERAEALAFAFVGRALEASGGNCLGPRELTAVAEAFRDDPTTAKFGFMDLLLRWASLQEERGEAAVSVSADGVVAEWTRTGPFPAALREGLLQALHGAAADERRDSALALLALLLRAVGQEWAVEAD-EEGAEAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGASTGDXXXXXXXXXXXXXXQKARGAMGPAGADPSIGIAAEIAGANAXXXXXXXXXEEKGETRAEGGEGEDGERP--APRASLPAAELRAIKQQREARLLRMVPVGLGVAESTIAFLCG 1899
A+LAQCLKLL+G SDEHKFAGLVMVTKHVPALTA R ++ S S G G+ LRQIC+AVGPAF+HRLLRTPGD+SSGGG GD GGLS+YQQIALGVLAA F+DESLV KF+P APALVRALRAA A TQTQGLCDALYC QA+ VPGGM RLLRAGAAPAVVSRLSA SG+RAA A+E GG + XXXXXXXXXX P G G AG + AER+EALA AFVGRALEASGG CLG RELTA+AEAFRDDPT AKFGF+DLLLRWASL+EE A DG V W R GPFPAALREGLLQALHGAA D+RRDSALALLA LLRAVGQ WAVE D EE EGXXXXXXXXXXXXXXXXX RKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGA D QKARGAMGPAGADPSIGIAAEIA A A +GGE +G+RP APR LPA++L+AIK+QR ARLLRMVPVGLGVAESTIAFLCG
Sbjct: 45 AVLAQCLKLLKGQSDEHKFAGLVMVTKHVPALTAYESVRADSSGSPSASAGGGE-LRQICNAVGPAFLHRLLRTPGDKSSGGGSGDDCGGGAVGGLSVYQQIALGVLAALFQDESLVPKFVPTAPALVRALRAADAATQTQGLCDALYCTQAIAGVPGGMARLLRAGAAPAVVSRLSAASGERAA-------------RANEERDFGGDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPKGDGRGGPAGGDTPAAEAAAERSEALALAFVGRALEASGGGCLGSRELTAIAEAFRDDPTPAKFGFLDLLLRWASLREEES-APFPAGGDGGVGAWARDGPFPAALREGLLQALHGAAEDDRRDSALALLASLLRAVGQGWAVEEDGEEPGNGEGXXXXXXXXXXXXXXXXXKKKRVAK----------RKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGARASDGDEDAGPGTG----QKARGAMGPAGADPSIGIAAEIAAAKAA-------------ATGKGGEQGEGQRPSPAPRCPLPASQLKAIKEQRAARLLRMVPVGLGVAESTIAFLCG 618
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: D8LCF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF7_ECTSI) HSP 1 Score: 561 bits (1445), Expect = 1.810e-184 Identity = 409/645 (63.41%), Postives = 442/645 (68.53%), Query Frame = 1
Query: 52 MVRVEEKESNGSSHDPSAP--------------GXXXXXXXXXXXXXXXAILAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGG-GGDAGP---GGLSLYQQIALGVLAAFFRDESLVKKFLPVAPALVRALRAAHATTQTQGLCDALYCVQALGDVPGGMERLLRAGAAPAVVSRLSAESGDRAAAXXXXXXXXXXXXXADEGAPSGGVEESKAGGVEETKQAPAPAXXXXXXXXXXCPRSSSPNGLGGVSSAGPAEDGGDGPA---------ERAEALAFAFVGRALEASGGNCLGPRELTAVAEAFRDDPTTAKFGFMDLLLRWASLQEERGEAAVSVSADGVVAEWTRTGPFPAALREGLLQALHGAAADERRDSALALLALLLRAVGQEWAVEADEEGAEAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGASTGDXXXXXXXXXXXXXXQKARGAMGPAGADPSIGIAAEIAGANAXXXXXXXXXEEKGETRAEGGEGEDGER--PAPRASLPAAELRAIKQQREARLLRMVPVGLGVAESTIAFLCG 1899
MV+VEE +++ SSHD S P XXXXXXXXXX A+LAQCLKLL+G SDEHKFAGLVMVTKHVPALTAS RT ++ S S G G+ LRQIC+AVGPAF+HRLLRTPGD+SSGGG GGD G GGLS+YQQIALGVLAA F+DESLV KF+P+APALVRALRAA A TQTQGLCDALYC QA+ VP GMERLLRAGAAPAV SRLS SG+RAA X XXXXXXXXXX P +DG GPA ER+E LA AFVGRALEASGG CLG RELTAVAEAFRDDPT AKFGF+DLLLRWASL+E+ A DG V WTR GPFPAALREGLLQALHGAA D+RRDSALALLA LLRAVGQEWAVE D E A+ XXXXXXXXXXXXXXXXXXXXXXXX RKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGA D QKARGAMGPAGADPSIGIAAEI A A GG+ +G+R PAPR+ LPA++L+AIK+QR ARLLRMVPVGLGVAESTIAFLCG
Sbjct: 1 MVQVEENQTS-SSHDGSPPLHPXXXXXXXXXXXXXXXXXXXXXXKPSASAVLAQCLKLLKGQSDEHKFAGLVMVTKHVPALTASESVRTVSSGSPSASAGGGE-LRQICNAVGPAFLHRLLRTPGDKSSGGGSGGDRGGAAVGGLSVYQQIALGVLAALFQDESLVPKFVPIAPALVRALRAADAATQTQGLCDALYCTQAIAGVPVGMERLLRAGAAPAVASRLSVASGERAARPNEEKDPGGDQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKDDGRGGPADGDTPAAAAERSEGLALAFVGRALEASGGGCLGSRELTAVAEAFRDDPTPAKFGFLDLLLRWASLREDEESAPFPAGGDGGVGAWTRDGPFPAALREGLLQALHGAAEDDRRDSALALLASLLRAVGQEWAVEEDVEEADXX----XXXXXXXXXXXXXXXXXXXXXXXXKKNRVAKRKRGTFVAFAVRCAAGEVRILLDEALSLFVPAAARGGARASDGDEEAGPGTG----QKARGAMGPAGADPSIGIAAEITAAKAA-------------AAGAGGKQGEGQRLSPAPRSPLPASQLKAIKEQRAARLLRMVPVGLGVAESTIAFLCG 622
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A835ZIL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIL7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 8.030e-16 Identity = 106/327 (32.42%), Postives = 133/327 (40.67%), Query Frame = 1
Query: 946 EALAFAFVGRALEASGGNCLGPRELTAVAEAFRDDPTTAKF-GFMDLLLRWAS-LQEERGEAAVSVSADGVVAEWTRTG--PFPAALREGLLQALHGAAADERRDSALALLALLLRAVGQEWAVEADEEGAEAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGTFVAFAVRCAAGEVRILLDEALS-LFVPAAAR-GGASTGDXXXXXXXXXXXXXXQKARGAMGPAGADPSIGIAAEIAGANAXXXXXXXXXEEKGETRAEGGEGEDGERPAPRASLPAAELRAIKQQREARLLRMVPVGLGVAESTIAFLCGGEG 1908
EA A + ++A+GG CLG +L A+A F DP+ A+ LL WA+ L RG + S G + G F +R GLL+ALHG+AA+ RD+AL LLA LLRA+G+ WAVE + G KRGTFV FA R A EVRILLDEAL L +P G + G AR P +AA A XXXX G ++R AR RM+PV LG+ ES + FLCG EG
Sbjct: 140 EAAALRCLECCVDATGGACLGAADLAALALVFARDPSGARSRDAARALLHWATALAAARGGS--SHGGGGAQRDHALEGGSEFAGLVRSGLLRALHGSAAEAARDAALTLLAALLRALGERWAVEGEGAGV---------------------------------------KRGTFVRFAARAAGNEVRILLDEALGVLLLPDTTPIEGKAQGPWRGVPQSEEALLDANTAR---------PPDPLAAAAAXXXXXXXXTPA-----------------GPXXXXXXXXXXXXXXXXXEKRAARAERMLPVALGILESAVQFLCGDEG 399
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A7S1CCT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCT1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.800e-11 Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQ-ICSAVGPAFVHRLLRTPGDQSSGGGGGDAGPGGLSLYQQIALGVLAAFFRDESLVKKFLPVAPALVRALR 540
L +CLKLLRG++DE +FAGL+MV H+P AS + RT +G LR+ I A+G F+ RLL+ GGD+ G + +AL ++A F D ++ KF P +R R
Sbjct: 16 LQECLKLLRGSTDEERFAGLLMVATHIPPP-ASGDART-----------EGAALRRTIFDAIGATFLKRLLK----------GGDSEKGDAPAHVGLALNLIATFVDDHAIAAKFRGAVPVFLRVAR 120
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: W4H0I0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0I0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 4.610e-9 Identity = 57/156 (36.54%), Postives = 79/156 (50.64%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAV----GPAFVHRLLRTPGDQSSGGGGGDA---GPGGLSLYQQIALGVLAAFFRDESLVKKFLPVA--PALVRALRAAHATTQTQGLCDALYCVQAL 603
LAQCL +L G SDEHKFAGL+MVTKH+ D L++I AV G +F RLL T G GG G +A G G +S +Q +AL ++++F +D SL ++F A ++ L A +TT T L D + + L
Sbjct: 15 LAQCLAILAGKSDEHKFAGLLMVTKHLQTE-------------------DESALQRIRKAVMDTAGISFFVRLLHTQG----GGDGDNAAADGDGDISPFQALALNLISSFCQDISLAREFATTAVVSVVLDVLPTAVSTTNTVVLQDCVQIIHGL 147
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A6A5AV52_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AV52_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.690e-7 Identity = 52/154 (33.77%), Postives = 73/154 (47.40%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAV----GPAFVHRLLRTPGDQSSGGGGGDAGPGG-LSLYQQIALGVLAAFFRDESLVKKFLPVA--PALVRALRAAHATTQTQGLCDALYCVQAL 603
LAQCL +L G SDEHKFAGL+MVTKH+ D L++I AV G +F RLL T G S +S +Q +AL ++++F +D SL ++F A ++ L A +TT T L D + + L
Sbjct: 15 LAQCLAILAGKSDEHKFAGLLMVTKHLQTE-------------------DESALQRIRKAVMDTAGISFFVRLLHTQGGGSXXXXXXXXXXXXDISPFQALALNLISSFCQDISLAREFATTAVVSVVLDVLPTAVSTTNTVVLQDCVQIIHGL 149
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A2D4BG86_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG86_PYTIN) HSP 1 Score: 59.7 bits (143), Expect = 5.640e-7 Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGGGGDAGPGGLSLYQQIALGVLAAFFRDESLVKKF 504
+ QCL++L G SDEHKFAGL+M+TK +D SP +L Q+ A+G AF R L+T G +S GLS +Q + L ++A+F D +L +F
Sbjct: 19 IEQCLRMLGGKSDEHKFAGLLMITKL---------------SDVSPERMXRLRL-QVLEAIGTAFFLRXLQTRGAESD---------DGLSSFQSLGLNLIASFCDDPTLAPQF 107
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A1S4BVW8_TOBAC (neurochondrin-like isoform X1 n=11 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BVW8_TOBAC) HSP 1 Score: 63.9 bits (154), Expect = 6.830e-7 Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGGGGDAGPG-GLSLYQQIALGVLAAFFR------DESLVKKFLPVAPALVRALRAAHATTQTQGLCDALYCVQALGDVPGGMERLLRAGAAPAVVSRLS 675
L CLKLLRG DE + AGL++VTK N D D +R + AVGP F+HRLLRT G G G PG Y Q+++ VLAAF R E +V K P +V + A + + + L+ V A + G++ L +G V SR+S
Sbjct: 26 LDDCLKLLRGERDEQRLAGLLLVTKFC-------------NKD------DHAAIRMVYDAVGPQFLHRLLRT------GTGKGSDRPGDNRDAYLQLSITVLAAFCRVPEIAASEDMVTKI----PLIVEIMSAKAGSPIIEECYEFLFLVSAANEE--GVKTLYDSGGLHVVASRMS 172
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: A0A2D4CCR4_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCR4_PYTIN) HSP 1 Score: 62.8 bits (151), Expect = 2.060e-6 Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 163 LAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGGGGDAGPGGLSLYQQIALGVLAAFFRDESLVKKFLPVAPALVRALR------AAHATTQTQGLCDALYCVQALGDVPGGMERLLRAGAAPAVVSRL 672
+ QCL++L G SDEHKFAGL+M+TK +D SP +L Q+ A+G AF RLL+T G +S GLS +Q + L ++A+F D +L +F A R +R A + L D ++ ++ + D G++ G V+S L
Sbjct: 660 IEQCLRMLGGKSDEHKFAGLLMITKL---------------SDVSPERMQRLRL-QVLEAIGTAFFLRLLQTRGAESD---------DGLSSFQSLGLNLIASFCDDPTLAPQF-----AHERVIRFALDQLALFVEPPSPALHDCVHILRGIADSDKGVKLFFHEGTLGRVLSTL 805
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Match: T0S6M9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S6M9_SAPDV) HSP 1 Score: 61.6 bits (148), Expect = 3.490e-6 Identity = 52/176 (29.55%), Postives = 76/176 (43.18%), Query Frame = 1
Query: 157 AILAQCLKLLRGTSDEHKFAGLVMVTKHVPALTASNEGRTSNNTDSSPSGGDGDQLRQICSAVGPAFVHRLLRTPGDQSSGGGGGDAGPGGLSLYQQIALGVLAAFFRDESLVKKFLP--VAPALVRALRAAHATTQTQGLCDALYCVQALG-DVPGGMERLLRAGAAPAVVSRLS 675
A L QCL +L G +DEHKFAGL+MVTKH+ A+ ++ + G F RLL T G LS Y+ +AL ++++F D +L +F V + AL+ A + D + +Q L G E L+ G PAVV ++
Sbjct: 6 AKLDQCLAVLAGPTDEHKFAGLLMVTKHLADADATTLQAV---------------RARVLATTGVVFFLRLLHTKGSDDE----------ALSPYRALALNLISSFCGDATLANEFAKASVVADTLEALQLGVAAANVTVVTDCHHVLQGLYLHTSSGRELLIENGLVPAVVQAMA 156 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10284.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10284.419.1 >prot_S-firma_F_contig10284.419.1 ID=prot_S-firma_F_contig10284.419.1|Name=mRNA_S-firma_F_contig10284.419.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=645bp HVCCSVSAVCALREQRAMVRVEEKESNGSSHDPSAPGGGISPPPPPPSASback to top mRNA from alignment at S-firma_F_contig10284:2086..4415+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10284.419.1 ID=mRNA_S-firma_F_contig10284.419.1|Name=mRNA_S-firma_F_contig10284.419.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2330bp|location=Sequence derived from alignment at S-firma_F_contig10284:2086..4415+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10284:2086..4415+ >mRNA_S-firma_F_contig10284.419.1 ID=mRNA_S-firma_F_contig10284.419.1|Name=mRNA_S-firma_F_contig10284.419.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3870bp|location=Sequence derived from alignment at S-firma_F_contig10284:2086..4415+ (Sphaerotrichia firma ET2_F female)back to top |