mRNA_S-firma_F_contig10274.409.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10274.409.1
Unique NamemRNA_S-firma_F_contig10274.409.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A5A8D1G2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D1G2_CAFRO)

HSP 1 Score: 153 bits (386), Expect = 3.970e-40
Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 1
Query:   64 AEARTISDDDMKKYGRETCEDDKCYICFEDSSEKGNELVPSPCSCGKPVHRQCLSRWIATKGSRLCSICKSKLPIDFTVDAPFVVLQVVRHMRGLHWAGARPIVCR--------DTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGA--FFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
            +EAR  + +D  K   E  +D  C+IC   SS +   L+PSPCSC   VHR CL RW+ +KGSR CSICK+KLP   TVDAP++V QV+RHMRGL W G R  +              V VGS   C + LPDPS+S+ H+ + +   A  FF+ DL S AGTF+K+ +     + Q + +K  RT +++
Sbjct:  215 SEARCSTAEDAAK--SELGDDTSCFICMCGSSAE-MPLMPSPCSCRARVHRACLRRWVESKGSRSCSICKTKLPFSATVDAPYLVFQVIRHMRGLQWNGEREYILSFFERAATAGRARVVVGSHGSCGIRLPDPSMSKQHAEVSYDSEARTFFLSDLKSRAGTFIKVVEPVVAPVGQLARFKFARTTMSI 401          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A812ZKS9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZKS9_9DINO)

HSP 1 Score: 143 bits (361), Expect = 3.620e-39
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1
Query:  223 LSRWIATKGSRLCSICKSKLPIDFTVDAPFVVLQVVRHMRGLHWAGARP-IVCRD------------TNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
            +S+WIAT G+R+CSIC++KLPI F   AP++VLQVVRHMRGLHW+G R  IV  D              SV VGSG++C L LPDPSLSR H+ I +   +F +EDL+SSAGTF++L  +  L  +  S +K+GRT LTV
Sbjct:    1 MSKWIATMGTRVCSICRTKLPIAFAAQAPYIVLQVVRHMRGLHWSGEREYIVSFDGGGQAPGWMAGGAESVVVGSGSECHLSLPDPSLSRRHACISYDGRSFQLEDLSSSAGTFVRLETAVCLLPQSPSTFKIGRTTLTV 140          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A7S1C555_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C555_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.210e-8
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  385 TNSVT-VGS-GNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
            TN VT +G+ G D  + +PD +LS  H+ IE++DGAF++ DL SS GTFLKL      ++E   ++ +G   L V
Sbjct: 1332 TNDVTTIGNIGGDATIAIPDRTLSPAHACIEYQDGAFWLRDLFSSTGTFLKLAAGKDYTMEMGDVFTIGHVELMV 1406          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A2D8MXC3_9BACT (FHA domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MXC3_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-7
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  388 NSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGA-FFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
            +S+ +GSG+DC+LCL D ++S +H+R+  RDG    VEDL SS GTFL        +L    + ++GRT L+V
Sbjct:   25 DSIDIGSGSDCELCLRDAAVSPSHARLH-RDGDDVVVEDLGSSLGTFLNEKPVDRANLRTGDLLRIGRTRLSV 96          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A661WXG7_9BACT (FHA domain-containing protein (Fragment) n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A661WXG7_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-6
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  382 DTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLG 585
            +T   TVGS +D D+   +P++S  H +IEFRD  +F+ DL S +GTF+K       ++E+ +++K G
Sbjct:   21 ETIRATVGSADDNDIRFNEPTISPHHFKIEFRDDKWFITDLHSKSGTFIKKEKIDEETIERGTIFKAG 88          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A7V1U897_9ACTN (DUF2662 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1U897_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 4.310e-6
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 1
Query:  391 SVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTML 597
            + T+G   +CD+ L DP+ SR H+RI  RDGA+ +EDL S+ GTF+         LE      +G T+L
Sbjct:  181 ATTIGRLPECDVVLADPAASRRHARIVHRDGAWRIEDLGSTNGTFVNDEPVTERPLEDGDRITVGTTVL 249          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A4Q3MDJ9_9BURK (Adenylate/guanylate cyclase domain-containing protein n=2 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3MDJ9_9BURK)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  346 LHWAGARPIVCRDTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKL--NDSH-PLSLEQASMYKLGRTMLTV 603
            L W G       D   V +G      LCL DP +SR H+RI++R+GAF + DL SS GT++    +D+H  L  +   ++  GR  L V
Sbjct:  194 LSWLGVVHSFSSDDMPVQIGRATQAQLCLTDPRVSRLHARIDWRNGAFLLTDL-SSFGTWVNFEGSDNHVQLRRDSCLLHGSGRVALGV 281          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A6I5X799_9MICO (FHA domain-containing protein n=1 Tax=Tetrasphaera sp. HKS02 TaxID=1813880 RepID=A0A6I5X799_9MICO)

HSP 1 Score: 53.1 bits (126), Expect = 2.140e-5
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  379 RDTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLND-SHPLSLEQASMYKLGRTML 597
            R+  +V +G   +C L L D   S  H+RI  RDGA+FVEDL S+ GT+L     ++P  +E  S  ++G+T++
Sbjct:   91 REAGTV-IGRNPECALVLDDDFASGRHARIFHRDGAWFVEDLGSTNGTYLGAERLTNPTRVEAGSTLRIGKTVI 163          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A5B8C6G6_9MICO (FHA domain-containing protein n=1 Tax=Georgenia yuyongxinii TaxID=2589797 RepID=A0A5B8C6G6_9MICO)

HSP 1 Score: 53.9 bits (128), Expect = 3.070e-5
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  385 TNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFL 528
            +  V VGS    DLC  DP LS  H+ I +R G  F+EDL S+AGTF+
Sbjct:   29 SQDVVVGSAEPADLCFADPLLSPAHAAIRYRGGGVFLEDLGSTAGTFV 76          
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: L0DPI0_SINAD (Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Singulisphaera TaxID=466152 RepID=L0DPI0_SINAD)

HSP 1 Score: 53.9 bits (128), Expect = 3.450e-5
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  400 VGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLG 585
            +G  +DCD+ +PDPS+SR HSR+E   G + + DL S+ GTF+    ++   L      +LG
Sbjct:   54 LGRDDDCDITVPDPSISRRHSRLESTGGGYRITDLQSTNGTFVNDVPANRTPLTDGDYLRLG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A5A8D1G2_CAFRO3.970e-4043.16Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812ZKS9_9DINO3.620e-3952.86Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1C555_9STRA7.210e-842.67Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D8MXC3_9BACT1.520e-743.84FHA domain-containing protein n=2 Tax=Planctomycet... [more]
A0A661WXG7_9BACT1.360e-638.24FHA domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7V1U897_9ACTN4.310e-640.58DUF2662 domain-containing protein n=1 Tax=Actinomy... [more]
A0A4Q3MDJ9_9BURK1.390e-537.08Adenylate/guanylate cyclase domain-containing prot... [more]
A0A6I5X799_9MICO2.140e-539.19FHA domain-containing protein n=1 Tax=Tetrasphaera... [more]
A0A5B8C6G6_9MICO3.070e-550.00FHA domain-containing protein n=1 Tax=Georgenia yu... [more]
L0DPI0_SINAD3.450e-538.71Diguanylate cyclase (GGDEF) domain-containing prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10274contigS-firma_F_contig10274:658..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5888.CAK63028
PFAMsFHA,RINGv
Max annot lvl2759|Eukaryota
Evalue3.83e-13
EggNOG OGs2E49M@1|root,2SB7G@2759|Eukaryota,3ZFTA@5878|Ciliophora
DescriptionThe RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
COG categoryA
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.725405-CDS-S-firma_F_contig10274:657..10311622815557.725405-CDS-S-firma_F_contig10274:657..1031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 658..1031 +
1696949414.1582665-CDS-S-firma_F_contig10274:657..10311696949414.1582665-CDS-S-firma_F_contig10274:657..1031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 658..1031 +
1622815557.7367072-CDS-S-firma_F_contig10274:1097..13261622815557.7367072-CDS-S-firma_F_contig10274:1097..1326Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 1098..1326 +
1696949414.1708715-CDS-S-firma_F_contig10274:1097..13261696949414.1708715-CDS-S-firma_F_contig10274:1097..1326Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10274 1098..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10274.409.1prot_S-firma_F_contig10274.409.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10274 658..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10274.409.1

>prot_S-firma_F_contig10274.409.1 ID=prot_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=201bp
MLERDQVVKMGACSLQIMDTCAEARTISDDDMKKYGRETCEDDKCYICFE
DSSEKGNELVPSPCSCGKPVHRQCLSRWIATKGSRLCSICKSKLPIDFTV
DAPFVVLQVVRHMRGLHWAGARPIVCRDTNSVTVGSGNDCDLCLPDPSLS
RTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLT
V
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mRNA from alignment at S-firma_F_contig10274:658..1326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10274.409.1 ID=mRNA_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=669bp|location=Sequence derived from alignment at S-firma_F_contig10274:658..1326+ (Sphaerotrichia firma ET2_F female)
ATGCTGGAGCGGGACCAGGTAGTCAAGATGGGGGCCTGCTCCCTGCAAAT CATGGACACGTGCGCGGAGGCGCGCACCATTTCGGACGACGACATGAAGA AGTACGGCCGGGAGACGTGCGAGGACGACAAGTGCTACATTTGCTTTGAG GACTCGAGCGAGAAGGGGAACGAGCTGGTGCCGTCGCCGTGCTCCTGCGG CAAGCCCGTCCACCGCCAGTGCCTGTCCCGGTGGATTGCAACCAAGGGGT CCCGGCTGTGCAGCATTTGCAAGTCCAAGCTCCCCATTGACTTCACCGTC GACGCCCCGTTTGTCGTGTTGCAAGTCGTGCGGCACATGCGTGGCCTGCA CTGGGCAGGTGCGCGCCCCATCGTGTTTGTCCTGCCCCCTGTGCTTACAT AACAACCCCCAGGCGAGCGCGAGTACGTCCTGTCCTTCAGCTGCCGGGAC ACCAACTCGGTGACCGTCGGCAGCGGCAACGACTGCGACCTCTGCCTCCC GGACCCGTCCCTGTCCCGCACCCACTCCCGGATTGAGTTCCGGGACGGCG CGTTCTTCGTGGAGGACCTCACGTCCTCTGCGGGCACCTTCCTGAAGCTC AACGACTCCCACCCCCTGTCCCTGGAGCAGGCCAGCATGTACAAATTGGG CCGCACCATGTTGACGGTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10274:658..1326+

>mRNA_S-firma_F_contig10274.409.1 ID=mRNA_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1206bp|location=Sequence derived from alignment at S-firma_F_contig10274:658..1326+ (Sphaerotrichia firma ET2_F female)
ATGCTGGAGCGGGACCAGGTAGTCAAGATGGGGGCCTGCTCCCTGCAAAT
CATGGACACGTGCGCGGAGGCGCGCACCATTTCGGACGACGACATGAAGA
AGTACGGCCGGGAGACGTGCGAGGACGACAAGTGCTACATTTGCTTTGAG
GACTCGAGCGAGAAGGGGAACGAGCTGGTGCCGTCGCCGTGCTCCTGCGG
CAAGCCCGTCCACCGCCAGTGCCTGTCCCGGTGGATTGCAACCAAGGGGT
CCCGGCTGTGCAGCATTTGCAAGTCCAAGCTCCCCATTGACTTCACCGTC
GACGCCCCGTTTGTCGTGTTGCAAGTCGTGCGGCACATGCGTGGCCTGCA
CTGGGCAGGTGCGCGCCCCATCGTATGCTGGAGCGGGACCAGGTAGTCAA
GATGGGGGCCTGCTCCCTGCAAATCATGGACACGTGCGCGGAGGCGCGCA
CCATTTCGGACGACGACATGAAGAAGTACGGCCGGGAGACGTGCGAGGAC
GACAAGTGCTACATTTGCTTTGAGGACTCGAGCGAGAAGGGGAACGAGCT
GGTGCCGTCGCCGTGCTCCTGCGGCAAGCCCGTCCACCGCCAGTGCCTGT
CCCGGTGGATTGCAACCAAGGGGTCCCGGCTGTGCAGCATTTGCAAGTCC
AAGCTCCCCATTGACTTCACCGTCGACGCCCCGTTTGTCGTGTTGCAAGT
CGTGCGGCACATGCGTGGCCTGCACTGGGCAGGTGCGCGCCCCATCGTCT
GCCGGGACACCAACTCGGTGACCGTCGGCAGCGGCAACGACTGCGACCTC
TGCCTCCCGGACCCGTCCCTGTCCCGCACCCACTCCCGGATTGAGTTCCG
GGACGGCGCGTTCTTCGTGGAGGACCTCACGTCCTCTGCGGGCACCTTCC
TGAAGCTCAACGACTCCCACCCCCTGTCCCTGGAGCAGGCCAGCATGTAC
AAATTGGGCCGCACCATGTTGACGGTCCTGCCGGGACACCAACTCGGTGA
CCGTCGGCAGCGGCAACGACTGCGACCTCTGCCTCCCGGACCCGTCCCTG
TCCCGCACCCACTCCCGGATTGAGTTCCGGGACGGCGCGTTCTTCGTGGA
GGACCTCACGTCCTCTGCGGGCACCTTCCTGAAGCTCAACGACTCCCACC
CCCTGTCCCTGGAGCAGGCCAGCATGTACAAATTGGGCCGCACCATGTTG
ACGGTC
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