mRNA_S-firma_F_contig10274.409.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A5A8D1G2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D1G2_CAFRO) HSP 1 Score: 153 bits (386), Expect = 3.970e-40 Identity = 82/190 (43.16%), Postives = 112/190 (58.95%), Query Frame = 1
Query: 64 AEARTISDDDMKKYGRETCEDDKCYICFEDSSEKGNELVPSPCSCGKPVHRQCLSRWIATKGSRLCSICKSKLPIDFTVDAPFVVLQVVRHMRGLHWAGARPIVCR--------DTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGA--FFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
+EAR + +D K E +D C+IC SS + L+PSPCSC VHR CL RW+ +KGSR CSICK+KLP TVDAP++V QV+RHMRGL W G R + V VGS C + LPDPS+S+ H+ + + A FF+ DL S AGTF+K+ + + Q + +K RT +++
Sbjct: 215 SEARCSTAEDAAK--SELGDDTSCFICMCGSSAE-MPLMPSPCSCRARVHRACLRRWVESKGSRSCSICKTKLPFSATVDAPYLVFQVIRHMRGLQWNGEREYILSFFERAATAGRARVVVGSHGSCGIRLPDPSMSKQHAEVSYDSEARTFFLSDLKSRAGTFIKVVEPVVAPVGQLARFKFARTTMSI 401
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A812ZKS9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZKS9_9DINO) HSP 1 Score: 143 bits (361), Expect = 3.620e-39 Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 223 LSRWIATKGSRLCSICKSKLPIDFTVDAPFVVLQVVRHMRGLHWAGARP-IVCRD------------TNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
+S+WIAT G+R+CSIC++KLPI F AP++VLQVVRHMRGLHW+G R IV D SV VGSG++C L LPDPSLSR H+ I + +F +EDL+SSAGTF++L + L + S +K+GRT LTV
Sbjct: 1 MSKWIATMGTRVCSICRTKLPIAFAAQAPYIVLQVVRHMRGLHWSGEREYIVSFDGGGQAPGWMAGGAESVVVGSGSECHLSLPDPSLSRRHACISYDGRSFQLEDLSSSAGTFVRLETAVCLLPQSPSTFKIGRTTLTV 140
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A7S1C555_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C555_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 7.210e-8 Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 385 TNSVT-VGS-GNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
TN VT +G+ G D + +PD +LS H+ IE++DGAF++ DL SS GTFLKL ++E ++ +G L V
Sbjct: 1332 TNDVTTIGNIGGDATIAIPDRTLSPAHACIEYQDGAFWLRDLFSSTGTFLKLAAGKDYTMEMGDVFTIGHVELMV 1406
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A2D8MXC3_9BACT (FHA domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MXC3_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 1.520e-7 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 388 NSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGA-FFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTMLTV 603
+S+ +GSG+DC+LCL D ++S +H+R+ RDG VEDL SS GTFL +L + ++GRT L+V
Sbjct: 25 DSIDIGSGSDCELCLRDAAVSPSHARLH-RDGDDVVVEDLGSSLGTFLNEKPVDRANLRTGDLLRIGRTRLSV 96
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A661WXG7_9BACT (FHA domain-containing protein (Fragment) n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A661WXG7_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.360e-6 Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 382 DTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLG 585
+T TVGS +D D+ +P++S H +IEFRD +F+ DL S +GTF+K ++E+ +++K G
Sbjct: 21 ETIRATVGSADDNDIRFNEPTISPHHFKIEFRDDKWFITDLHSKSGTFIKKEKIDEETIERGTIFKAG 88
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A7V1U897_9ACTN (DUF2662 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1U897_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 4.310e-6 Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 391 SVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLGRTML 597
+ T+G +CD+ L DP+ SR H+RI RDGA+ +EDL S+ GTF+ LE +G T+L
Sbjct: 181 ATTIGRLPECDVVLADPAASRRHARIVHRDGAWRIEDLGSTNGTFVNDEPVTERPLEDGDRITVGTTVL 249
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A4Q3MDJ9_9BURK (Adenylate/guanylate cyclase domain-containing protein n=2 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3MDJ9_9BURK) HSP 1 Score: 55.1 bits (131), Expect = 1.390e-5 Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1
Query: 346 LHWAGARPIVCRDTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKL--NDSH-PLSLEQASMYKLGRTMLTV 603
L W G D V +G LCL DP +SR H+RI++R+GAF + DL SS GT++ +D+H L + ++ GR L V
Sbjct: 194 LSWLGVVHSFSSDDMPVQIGRATQAQLCLTDPRVSRLHARIDWRNGAFLLTDL-SSFGTWVNFEGSDNHVQLRRDSCLLHGSGRVALGV 281
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A6I5X799_9MICO (FHA domain-containing protein n=1 Tax=Tetrasphaera sp. HKS02 TaxID=1813880 RepID=A0A6I5X799_9MICO) HSP 1 Score: 53.1 bits (126), Expect = 2.140e-5 Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 379 RDTNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLND-SHPLSLEQASMYKLGRTML 597
R+ +V +G +C L L D S H+RI RDGA+FVEDL S+ GT+L ++P +E S ++G+T++
Sbjct: 91 REAGTV-IGRNPECALVLDDDFASGRHARIFHRDGAWFVEDLGSTNGTYLGAERLTNPTRVEAGSTLRIGKTVI 163
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: A0A5B8C6G6_9MICO (FHA domain-containing protein n=1 Tax=Georgenia yuyongxinii TaxID=2589797 RepID=A0A5B8C6G6_9MICO) HSP 1 Score: 53.9 bits (128), Expect = 3.070e-5 Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
Query: 385 TNSVTVGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFL 528
+ V VGS DLC DP LS H+ I +R G F+EDL S+AGTF+
Sbjct: 29 SQDVVVGSAEPADLCFADPLLSPAHAAIRYRGGGVFLEDLGSTAGTFV 76
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Match: L0DPI0_SINAD (Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Singulisphaera TaxID=466152 RepID=L0DPI0_SINAD) HSP 1 Score: 53.9 bits (128), Expect = 3.450e-5 Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 400 VGSGNDCDLCLPDPSLSRTHSRIEFRDGAFFVEDLTSSAGTFLKLNDSHPLSLEQASMYKLG 585
+G +DCD+ +PDPS+SR HSR+E G + + DL S+ GTF+ ++ L +LG
Sbjct: 54 LGRDDDCDITVPDPSISRRHSRLESTGGGYRITDLQSTNGTFVNDVPANRTPLTDGDYLRLG 115 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10274.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10274.409.1 >prot_S-firma_F_contig10274.409.1 ID=prot_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=201bp MLERDQVVKMGACSLQIMDTCAEARTISDDDMKKYGRETCEDDKCYICFEback to top mRNA from alignment at S-firma_F_contig10274:658..1326+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10274.409.1 ID=mRNA_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=669bp|location=Sequence derived from alignment at S-firma_F_contig10274:658..1326+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10274:658..1326+ >mRNA_S-firma_F_contig10274.409.1 ID=mRNA_S-firma_F_contig10274.409.1|Name=mRNA_S-firma_F_contig10274.409.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1206bp|location=Sequence derived from alignment at S-firma_F_contig10274:658..1326+ (Sphaerotrichia firma ET2_F female)back to top |