mRNA_S-firma_F_contig10271.407.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10271.407.1
Unique NamemRNA_S-firma_F_contig10271.407.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10271.407.1 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-13
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   19 EFAATLTEAVVTNDTLELANGAFFLGDTMLGSKLISVLVTRNYPRLSWTVLAVALCGTCGDRHTRGTPGIGKSVGGLYLLYLLRCQGRTAPGILPF**RSGRVC*VQDGGV 351
            +F A LT+AVV ++TLELA+G FFLG+  L SKL    +   Y  LS  +L     GT       GTPGIGKS  G YL+YLLR QG T   +L    R G      DGGV
Sbjct:   23 DFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLF---IRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTV--VLE---RKGCWFRFSDGGV 125
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BLAST of mRNA_S-firma_F_contig10271.407.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-12
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   10 NVTEFAATLTEAVVTNDTLELANGAFFLGDTMLGSKLISVLVTRNYPRLSWTVLAVALCGTCGDRHTRGTPGIGKSVGGLYLLYL 264
            NV++FAA LT AVVT DTLELANG FFLG++ LGSKL    +   Y  ++  +L+    G   D    GTPGIGKS  G YLLYL
Sbjct:  142 NVSDFAAALTGAVVTEDTLELANGTFFLGNSDLGSKLF---IRHCYKEMADLILS----GKVQDVVVTGTPGIGKSTFGYYLLYL 219
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BLAST of mRNA_S-firma_F_contig10271.407.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.190e-11
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:   19 EFAATLTEAVVTNDTLELANGAFFLGDTMLGSKLISVLVTRNYPRLSWTVLAVALCGTCGDRHTRGTPGIGKSVGGLYLLYLLRCQGRT 285
            +F A LT+AVV ++TLELA+G FFLG+  L SKL    +   Y  LS  +L     GT       GTPGIGKS  G YL+YLLR QG T
Sbjct:   42 DFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLF---IRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNT 127
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BLAST of mRNA_S-firma_F_contig10271.407.1 vs. uniprot
Match: A0A6H5K1J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.140e-6
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   19 EFAATLTEAVVTNDTLELANGAFFLGDTMLGSKLISVLVTRNYPRLSWTVLAVALCGTCGDRHTRGTPGIGKSVGGLYLLYLLRCQGRT 285
            +F A LT A +T +TL LANG FFLG +   SK+          +L     A    GT       GT GIGKSV G +LLY LR +GRT
Sbjct:   61 DFGAALTGAALTENTLTLANGTFFLGKSACRSKIFVRHCYNETFQLIRKSAAQRNDGTTPKIVIVGTSGIGKSVFGFFLLYQLRLEGRT 149
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10271.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCR9_9PHAE1.220e-1346.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G8Q1_ECTSI1.050e-1254.12Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KFB9_9PHAE2.190e-1150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1J0_9PHAE2.140e-643.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10271contigS-firma_F_contig10271:3270..4204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size935
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10271.407.1prot_S-firma_F_contig10271.407.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10271 3372..3578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.5929353-UTR-S-firma_F_contig10271:3269..33711622815557.5929353-UTR-S-firma_F_contig10271:3269..3371Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10271 3270..3371 +
1696949414.088317-UTR-S-firma_F_contig10271:3269..33711696949414.088317-UTR-S-firma_F_contig10271:3269..3371Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10271 3270..3371 +
1622815557.6220596-UTR-S-firma_F_contig10271:3578..42041622815557.6220596-UTR-S-firma_F_contig10271:3578..4204Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10271 3579..4204 +
1696949414.117822-UTR-S-firma_F_contig10271:3578..42041696949414.117822-UTR-S-firma_F_contig10271:3578..4204Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10271 3579..4204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.6089892-CDS-S-firma_F_contig10271:3371..35781622815557.6089892-CDS-S-firma_F_contig10271:3371..3578Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10271 3372..3578 +
1696949414.0970438-CDS-S-firma_F_contig10271:3371..35781696949414.0970438-CDS-S-firma_F_contig10271:3371..3578Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10271 3372..3578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10271.407.1

>prot_S-firma_F_contig10271.407.1 ID=prot_S-firma_F_contig10271.407.1|Name=mRNA_S-firma_F_contig10271.407.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
MLGSKLISVLVTRNYPRLSWTVLAVALCGTCGDRHTRGTPGIGKSVGGLY
LLYLLRCQGRTAPGILPF*
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mRNA from alignment at S-firma_F_contig10271:3270..4204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10271.407.1 ID=mRNA_S-firma_F_contig10271.407.1|Name=mRNA_S-firma_F_contig10271.407.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=935bp|location=Sequence derived from alignment at S-firma_F_contig10271:3270..4204+ (Sphaerotrichia firma ET2_F female)
TCAGCCGACAACGTCACGGAATTTGCGGCCACACTCACCGAAGCCGTGGT
AACCAACGATACCCTGGAACTCGCAAATGGCGCGTTCTTCCTGGGTGATA
CGATGCTCGGATCCAAGCTTATATCCGTCCTTGTTACACGGAATTATCCG
AGATTATCTTGGACGGTGCTAGCAGTGGCGCTTTGCGGAACATGTGGTGA
CAGGCACACCCGAGGCACACCCGGAATCGGGAAATCGGTGGGTGGCTTGT
ATCTCCTGTACCTGCTTCGGTGCCAAGGGAGAACGGCTCCTGGTATACTC
CCGTTTTAGTGAAGGAGTGGGAGAGTTTGCTAGGTTCAAGACGGCGGGGT
ATTTGACAGAAGACCCAACGGCTTGGGATTTGAAAGGCCCGGAGGAGCGG
CCTAAGGAGATGTTCAGGGGTAAAAATGTTGTGTTGGTGTCGCCCAAGGC
GATCAGGGTCAACGAGTTCATGAAAGAGGTCAAGCCCATTCAGTTGTTCA
TGGGAGCGTTGAGCCTGGGCGAGCTGTTGGAATGTCAGCGGGCTAGTTTT
CCTCGTGCGCGATGTTGCGACGTGCAGAATGTTTTTTTTTCGTGATGTGG
GACGTGTGGCTAGAGCAGTCTTTGAGAAGAGCTGGGTCGAAAAGCTTCTG
AAAGGGAAAATGGTGACAGCGGCAGTAAACTTAAAACTTTGGGTGGGCCA
CGAGCAACACGCCCCTGAATAGCCGCCGTCTTGGAAGGCGTTCTTCATAG
GCGCACAACAAAATAGACACCATCATCAACGGTATACACAACCAACCAGA
TCGATCGAAGCCGTGTCTTGGCTGATGATTTAGACGACAGTCGCATGATG
TGTTTTGGCGCTGGGTGCTGATGCGTGTGCCGTGGTACTGCTGTTGAATG
GCGATGGTGCGTGAGATGTGTGGATGAAGAAGAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10271:3270..4204+

>mRNA_S-firma_F_contig10271.407.1 ID=mRNA_S-firma_F_contig10271.407.1|Name=mRNA_S-firma_F_contig10271.407.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig10271:3270..4204+ (Sphaerotrichia firma ET2_F female)
ATGCTCGGATCCAAGCTTATATCCGTCCTTGTTACACGGAATTATCCGAG
ATTATCTTGGACGGTGCTAGCAGTGGCGCTTTGCGGAACATGTGGTGACA
GGCACACCCGAGGCACACCCGGAATCGGGAAATCGGTGGGTGGCTTGTAT
CTCCTGTACCTGCTTCGGTGCCAAGGGAGAACGGCTCCTGGTATACTCCC
GTTTTAGATGCTCGGATCCAAGCTTATATCCGTCCTTGTTACACGGAATT
ATCCGAGATTATCTTGGACGGTGCTAGCAGTGGCGCTTTGCGGAACATGT
GGTGACAGGCACACCCGAGGCACACCCGGAATCGGGAAATCGGTGGGTGG
CTTGTATCTCCTGTACCTGCTTCGGTGCCAAGGGAGAACGGCTCCTGGTA
TACTCCCGTTTTAG
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