mRNA_S-firma_F_contig1027.405.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1027.405.1
Unique NamemRNA_S-firma_F_contig1027.405.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI)

HSP 1 Score: 494 bits (1271), Expect = 1.030e-167
Identity = 255/317 (80.44%), Postives = 273/317 (86.12%), Query Frame = 1 
Query:  280 TTALL--CLPGATSFT----ACGSQR-----PAAIGV------ERRSTRTDSS-----TCMAAKRGAGEEEVGVEQQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSLS 1164
            TTALL  CL G  SFT    A G        P++  V      E R+ RT SS     TC+ AK G GEEE G EQQDVIEK FSM FGNK+D PGGDL+RITVKKFPDQYPAEK+LQAEPV+GDSKD+AVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPG+VV KTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDT++RAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVG+QKGSER+GRSKLGSYYERLPAAYGG+SIFAPGDNGG+AE+VDLKAYVGVY +GEKIPFDDAIPFSLS
Sbjct:    6 TTALLWSCLQGVNSFTVPPQALGKTHRSLSAPSSATVVTRVEHEDRTCRTSSSRGSRSTCVRAKGGTGEEEAGEEQQDVIEKFFSMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 322
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK)

HSP 1 Score: 325 bits (832), Expect = 4.180e-102
Identity = 164/247 (66.40%), Postives = 194/247 (78.54%), Query Frame = 1 
Query:  430 GVEQQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTS--RRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSLS 1164
            G E QD +EKLFS  FG K + P G L+R   + FPDQ+PA K   A+PV GDSKD+AV RPLLKQTELE RKLKLVYDA +NGW P AFHKGVD  GPG++VAKTKGGAV+GGYNPKGWVGYGEYRPGLSAFLFTW DG+T    +A+KLRKIGGAGLAV DKPE GP+FG+DG  + +    +R+ +  LGSYYER+P   G  S+FA G++    E+VDLKAYVG+YAKGE+IPF+DAIPFSL+
Sbjct:   63 GQEDQDPVEKLFSFFFGQKEEEPLG-LKRFNKETFPDQFPATKTEFADPVPGDSKDMAVFRPLLKQTELESRKLKLVYDANKNGWNPTAFHKGVDKLGPGVIVAKTKGGAVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKIGGAGLAVIDKPEEGPVFGADGLCIRMAPKKQRIAQCSLGSYYERMPG--GKKSLFAQGESLANTELVDLKAYVGIYAKGEEIPFNDAIPFSLT 306
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA)

HSP 1 Score: 303 bits (777), Expect = 9.460e-95
Identity = 154/251 (61.35%), Postives = 193/251 (76.89%), Query Frame = 1 
Query:  436 EQQDVIEKLFSMVFGNK---NDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGS-----ERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSLS 1164
            +QQD++E+ F  VFG K   ++ P G ++R+T++ FPDQYPA K   A+PV GD+KD+A+ RP L QT LE RKLK VYDA R+GW+PAAFH+GVD KGPG+V+A+T GGAVVGGYNPKGWVG  EYRPGLSAFLFTW DGDTS+R +KLRK+GGAGLA +D+   GP FGS+G  V L  GS     ER+ R KLG+YYER+P   GG+S+FAPG+ G  A++ +LKA+VGVYAK E+IPFDD I  S +
Sbjct:    5 QQQDIVERFFGFVFGQKALDDEAPMG-MKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPD--GGNSMFAPGEKG-AAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 251
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A7S4EVG5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVG5_CHRCT)

HSP 1 Score: 261 bits (667), Expect = 7.030e-77
Identity = 130/241 (53.94%), Postives = 168/241 (69.71%), Query Frame = 1 
Query:  439 QQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            + D IEKLF + FG   +G    L R      PD YPA K   A+PV+GD ++  ++RPLLK T LE+  L+L YDA R+GW+ A FH+ VD  GP IVV +T+GGAV GGY PKG+ GYGEYR  ++AFL+TW DGDT R  +KL+K+GGAGLA  D+PE GP FG++G  + +  GSER+ RSKLG YYER+P   GG SIFA  DN    E+ +L+ YVGV+ +GE+IPFD AIPF++
Sbjct:  134 EPDFIEKLFGVFFGAPQEGEVAGLARTA--SAPDTYPATKTEFADPVEGDIEEATILRPLLKNTNLEYLPLRLAYDANRDGWRAADFHEKVDKTGPCIVVCETEGGAVCGGYAPKGFAGYGEYRGSIAAFLYTWPDGDTDRAPIKLQKMGGAGLATIDEPETGPRFGAEGLSIPMDPGSERIARSKLGPYYERMPD--GGGSIFAANDNSKRCELKELRVYVGVWPEGERIPFDGAIPFAI 370
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP)

HSP 1 Score: 243 bits (619), Expect = 9.470e-71
Identity = 132/264 (50.00%), Postives = 182/264 (68.94%), Query Frame = 1 
Query:  415 GEEEVGVEQQD------VIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKD--VAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGL-------QKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            G+  +G EQQD      VIE+    +   K   P G L R    KFP+ +PAE   QA+PV+GD KD  + +IRP++ +T L+ R ++ V+DA+ +GWK A+FH+ VD +GP +V+A+TKGGAVVGGY+PKGWVGYGE R  ++AFLFTW DGDTS+R++KLRKIG A +A  D+PE GP FG++G  + L         G+ER+ R KLG+YY++LP   G  S+FA G+ G + E+V L+A+VG+Y   E+IPF DA+PFSL
Sbjct:   46 GKTRLGAEQQDAEEDLDVIERAMKWLGFKKEKTPFG-LARFDRDKFPELWPAELEEQADPVEGDEKDPDLQLIRPMMARTSLQTRPMECVFDAEVHGWKAASFHRCVDKRGPAVVLARTKGGAVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKIGMASMASMDQPESGPRFGAEGLTIPLLDARATEYDGTERVARCKLGTYYDKLPD--GSKSLFAHGE-GLLTELVSLRAFVGIYGSDEEIPFLDALPFSL 305
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A7S1TFM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFM7_9RHOD)

HSP 1 Score: 240 bits (612), Expect = 8.440e-70
Identity = 137/289 (47.40%), Postives = 183/289 (63.32%), Query Frame = 1 
Query:  337 RPAAIGVERRST-----RTDSSTCMAAKRGAGEEEVGVEQQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQK-------GSERLGRSKLGSYYERLPAAYGGSSIFAPGDNG--GMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            R   +G+ RRS      R  ++ C    +  GE     E  D++EKLF + FG K + P G L+R    +FP+Q+PA     AE VQGDSKDVA+ RPLL +T+L  R L+LV+D   +GW   AFH+ VD +G G+V+ +T  G V GGYNPKGWVGYGE R  +++FLFTW DG+T++ AMK+RK+G A L+V D PE GP FG+D   + LQ        GSE+  RSKLGSYYERLP   G + +F    +   G   +  +K +VGVY +GE+IPF+DA+PFSL
Sbjct:   17 RMGGVGLVRRSNARVIRRDRAAECRLESKQDGEG--SGEDSDLLEKLFGVFFGKKEENPLG-LKRFDRDRFPEQFPAPLDEFAEAVQGDSKDVALFRPLLARTQLCRRSLRLVFDTDSDGWTAEAFHRAVDRQGAGVVLLRTVDGVVCGGYNPKGWVGYGESRGSVASFLFTWPDGNTNKPAMKMRKVGQAYLSVLDNPETGPQFGADSLVIPLQDTRLRGPDGSEKQARSKLGSYYERLPD--GRNCLFPDSSHPRKGYCYVDSVKVFVGVYEEGEQIPFNDALPFSL 300
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP)

HSP 1 Score: 245 bits (625), Expect = 4.190e-69
Identity = 131/251 (52.19%), Postives = 164/251 (65.34%), Query Frame = 1 
Query:  433 VEQQDVIEKLFSMVFGNKNDGPGG-DLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQK-------GSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            V + +  EK F+ +FG     P    L+R    KFP+ YPA     A PV  D       RPLL +T LE R+LKLV+DA R+GW P AFH  VD  GPG+V+A+T+ GAVVGGYNPKGWVGYGEYR  ++AFLF+W DGDTS+ A+KLRK+GGAGLA  D PE GP FG+DG  + L+        G ERL R KLG YYE+ P   G ++IF   +    A + DLK YVGVY +GE+IP++DA+PF L
Sbjct:  265 VAEPEGFEKFFASLFGKIGASPEQVGLKRFDQSKFPELYPATLTEFAAPVASDDATAQQFRPLLAKTSLEKRELKLVFDANRDGWTPGAFHGAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKVGGAGLACIDDPESGPRFGADGLHIPLEAPRSEAEAGRERLARCKLGPYYEKRPD--GSNTIFTKAEKA-TATLTDLKVYVGVYEEGEEIPYNDALPFQL 512
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A448ZH24_9STRA (TLDc domain-containing protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH24_9STRA)

HSP 1 Score: 236 bits (603), Expect = 2.470e-68
Identity = 127/239 (53.14%), Postives = 159/239 (66.53%), Query Frame = 1 
Query:  445 DVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            D ++K+FS+ FG K   P G ++R   ++FP+QYPA     AEPV  D KD+AV+RP+LK T LE R LKL Y A R+GW P +FH+ VD  G G+VV  T+ G V GGYNPKGWVGYGE R  ++AFL+ +  G TS    KLRK+GG  LA  D PE GP FG+D   + L+K S R+ RSKLGSYYER P   GG+++F  G  G    + DLK Y GVYA+GE IPF DA PF+L
Sbjct:   80 DPVDKIFSVFFGKKEATPMG-MKRFGRERFPEQYPAVLDEWAEPVASDDKDMAVLRPMLKNTNLETRGLKLTYSANRDGWDPVSFHRKVDKLGGGLVVCTTEDGLVCGGYNPKGWVGYGEARGSIAAFLYVFTKG-TSELPTKLRKVGGPSLAQQDLPETGPSFGADSLVIPLEKSSPRVARSKLGSYYERFPG--GGNTLF--GKRGSSVRLKDLKVYHGVYAEGEYIPFTDAEPFAL 312
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: A0A0M0JKV5_9EUKA (TLDc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKV5_9EUKA)

HSP 1 Score: 231 bits (588), Expect = 2.450e-67
Identity = 121/231 (52.38%), Postives = 154/231 (66.67%), Query Frame = 1 
Query:  469 MVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            M FG+   G    L R      PD YPA K   A PV+GD  ++A+IRPLLK T LE   L+LVYDA ++GW  A+FH GVD +GP +V+ KTKGG V GGY PKG+ G+GEYR  ++AFLFTW DGD  + A+KL+K GG  LA  D+PE GP FG+DG  V ++ G ERL  SKLG YYE +P   G  S+F PGD G   E+  ++AY G + +GE+IPF+ AIPF+L
Sbjct:    1 MFFGDPQQGDVAGLRRTA--GAPDTYPATKTEFALPVEGDDTEMALIRPLLKNTNLELLPLRLVYDANKDGWNAASFHGGVDAQGPCVVLCKTKGGCVCGGYAPKGFAGFGEYRGSIAAFLFTWPDGDVRQPAVKLQKQGGGSLATIDEPETGPRFGADGLTVFMRPGRERLATSKLGPYYEVMPD--GRRSVFGPGD-GMTCELTSVRAYAGCWPEGERIPFNGAIPFAL 226
[Close]
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Match: R7QPM3_CHOCR (TLDc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPM3_CHOCR)

HSP 1 Score: 233 bits (595), Expect = 3.060e-67
Identity = 123/249 (49.40%), Postives = 171/249 (68.67%), Query Frame = 1 
Query:  439 QQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKVLQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSRRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGL--------QKGSERLGRSKLGSYYERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL 1161
            + D++E++++ +FG K   P G L+R    +FP+ YPA     A+PV  D+ ++A+ RPLL +T+L+ R+++L+YDA R+GW    FH+ ++ KG  +V+A T G AV GGYNPKG+VGYGE R   +AFLFTW DGDTS+ A+KLRK+GGA LAV D+PE GP FG+D   V L        +   +R+  SKLGSYYER P   GG+++FA G+N     + +LK + GVYA GE+IPFDDA+PFSL
Sbjct:   63 EMDIVERVYTAIFGAKQAEPFG-LKRFDRDRFPELYPATLDEFADPVPADTPEMALFRPLLARTQLQTREIQLLYDANRDGWSADTFHEALNRKGASVVMASTAG-AVFGGYNPKGFVGYGESRGSKAAFLFTWPDGDTSKPAVKLRKVGGAALAVVDEPETGPKFGADSLVVPLRPPRANWGESQKDRIAYSKLGSYYERRPD--GGNTLFANGENPKGEVLQELKVFAGVYADGEEIPFDDALPFSL 307
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1027.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ9_ECTSI1.030e-16780.44TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6V1NAM7_HETAK4.180e-10266.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YK91_9STRA9.460e-9561.35TLDc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4EVG5_CHRCT7.030e-7753.94Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A5J4YZD4_PORPP9.470e-7150.00TLDc domain-containing protein n=1 Tax=Porphyridiu... [more]
A0A7S1TFM7_9RHOD8.440e-7047.40Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0DY99_9CRYP4.190e-6952.19Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A448ZH24_9STRA2.470e-6853.14TLDc domain-containing protein n=2 Tax=Pseudo-nitz... [more]
A0A0M0JKV5_9EUKA2.450e-6752.38TLDc domain-containing protein n=1 Tax=Chrysochrom... [more]
R7QPM3_CHOCR3.060e-6749.40TLDc domain-containing protein n=1 Tax=Chondrus cr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1027contigS-firma_F_contig1027:20453..26044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBZ9
PFAMsTLD
Max annot lvl2759|Eukaryota
Evalue4.59e-175
EggNOG OGs2BGQI@1|root,2S19X@2759|Eukaryota
DescriptionTLD
COG categoryS
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003910.1
Exons7
Model size2210
Cds size906
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.32808-UTR-S-firma_F_contig1027:20452..207131622815557.32808-UTR-S-firma_F_contig1027:20452..20713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1027 20453..20713 +
1696949413.8786294-UTR-S-firma_F_contig1027:20452..207131696949413.8786294-UTR-S-firma_F_contig1027:20452..20713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1027 20453..20713 +
1622815557.4224463-UTR-S-firma_F_contig1027:25001..260441622815557.4224463-UTR-S-firma_F_contig1027:25001..26044Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1027 25002..26044 +
1696949413.9688654-UTR-S-firma_F_contig1027:25001..260441696949413.9688654-UTR-S-firma_F_contig1027:25001..26044Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1027 25002..26044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.3387415-CDS-S-firma_F_contig1027:20713..207901622815557.3387415-CDS-S-firma_F_contig1027:20713..20790Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 20714..20790 +
1696949413.8933866-CDS-S-firma_F_contig1027:20713..207901696949413.8933866-CDS-S-firma_F_contig1027:20713..20790Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 20714..20790 +
1622815557.3479145-CDS-S-firma_F_contig1027:21031..211601622815557.3479145-CDS-S-firma_F_contig1027:21031..21160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 21032..21160 +
1696949413.9036684-CDS-S-firma_F_contig1027:21031..211601696949413.9036684-CDS-S-firma_F_contig1027:21031..21160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 21032..21160 +
1622815557.3610609-CDS-S-firma_F_contig1027:21905..220751622815557.3610609-CDS-S-firma_F_contig1027:21905..22075Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 21906..22075 +
1696949413.9123616-CDS-S-firma_F_contig1027:21905..220751696949413.9123616-CDS-S-firma_F_contig1027:21905..22075Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 21906..22075 +
1622815557.3741734-CDS-S-firma_F_contig1027:22864..229971622815557.3741734-CDS-S-firma_F_contig1027:22864..22997Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 22865..22997 +
1696949413.9319656-CDS-S-firma_F_contig1027:22864..229971696949413.9319656-CDS-S-firma_F_contig1027:22864..22997Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 22865..22997 +
1622815557.3872664-CDS-S-firma_F_contig1027:23323..234351622815557.3872664-CDS-S-firma_F_contig1027:23323..23435Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 23324..23435 +
1696949413.94127-CDS-S-firma_F_contig1027:23323..234351696949413.94127-CDS-S-firma_F_contig1027:23323..23435Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 23324..23435 +
1622815557.399829-CDS-S-firma_F_contig1027:23988..241101622815557.399829-CDS-S-firma_F_contig1027:23988..24110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 23989..24110 +
1696949413.9495058-CDS-S-firma_F_contig1027:23988..241101696949413.9495058-CDS-S-firma_F_contig1027:23988..24110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 23989..24110 +
1622815557.4116673-CDS-S-firma_F_contig1027:24838..250011622815557.4116673-CDS-S-firma_F_contig1027:24838..25001Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 24839..25001 +
1696949413.9596639-CDS-S-firma_F_contig1027:24838..250011696949413.9596639-CDS-S-firma_F_contig1027:24838..25001Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1027 24839..25001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1027.405.1prot_S-firma_F_contig1027.405.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1027 20714..25001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1027.405.1

>prot_S-firma_F_contig1027.405.1 ID=prot_S-firma_F_contig1027.405.1|Name=mRNA_S-firma_F_contig1027.405.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=302bp
MKTAIVTTALLCLPGATSFTACGSQRPAAIGVERRSTRTDSSTCMAAKRG
AGEEEVGVEQQDVIEKLFSMVFGNKNDGPGGDLERITVKKFPDQYPAEKV
LQAEPVQGDSKDVAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGV
DFKGPGIVVAKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTSR
RAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGLQKGSERLGRSKLGSYY
ERLPAAYGGSSIFAPGDNGGMAEIVDLKAYVGVYAKGEKIPFDDAIPFSL
S*
back to top

mRNA from alignment at S-firma_F_contig1027:20453..26044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1027.405.1 ID=mRNA_S-firma_F_contig1027.405.1|Name=mRNA_S-firma_F_contig1027.405.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5592bp|location=Sequence derived from alignment at S-firma_F_contig1027:20453..26044+ (Sphaerotrichia firma ET2_F female)
CTACCCACTGTCTGTGGTGCTCGGGGGGCCAAGCGTTACCACCCCATACG
CAATCCCACACAAATTTGTCTTTTGGGGGTTGGGGGGATAGGGTATACGC
CCCGAAAAAATGAAAAATGGAAGAGGGCGTTCCTCGGAAACTGATCAGCT
GTGACGGCAGACGGCAGTCTCGTGTTGCTGCTGGTCTTGTTGGAAGCCAA
GAAAAGCCCGCCTCGTCCTCCTCGTCCTCCTCCTCCTCCTCAACGTGCAC
TTGGGGCCGACATGAAAACTGCTATTGTGACTACAGCTCTGCTGTGTCTC
CCGGGCGCGACATCGTTTACGGCATGTGGCAGCCAAAGGTGCGAAAGCTG
CAATGATGTGTCGACTTTCATTCCACGTGAGCCTGCTGCCAAAACCTTCT
TCACGAAACATGCAGCACCCCCTTCCCCTCTCTCGACCGATCCGCCCAAT
CTCACCACCGGTGTTTTCGCACCCCTCAACGATGGAGGAGCCTCGTGAGC
GAGCGCGTGTGCGTGAATGTGTGTGCGCTGAAAAATGCACCGCCCAACCC
CCAAAAAAACTGCTGTCATCACTCAGCAGGCCAGCTGCCATCGGAGTTGA
ACGCAGATCTACGAGGACGGATTCCAGCACGTGCATGGCGGCGAAGAGAG
GTGCAGGGGAGGAGGAGGTGGGGGTGGAGCAGCAAGATGTCATCGAGAAG
TTGTTCAGGTGAGGGGGAGTAGGCACAATGGCGTTGTTCGCCCTGGTTTT
GCTTGTTCGGTCCATGCGGAGGGAAAACAATCAAATATGCTGCTGCTGAC
AAGTACCTGGTAGATCTTAGCGCGGCAGTGTCGCAGCAGTAGCCTGCTTG
CTGGCAGTCTGGACTTCCGGTACGAACTTGCGTGCGATGGTAGGACAATT
GTACATGGTGAGGGGGATGCGCGCTGGTTGGTGGATATAGTTTAGGGTCT
GGAGAGAGGCATTTTTGCTTCGAAACCCCTCTTTCACGGGTTCGACGTCA
GGAAACCATTACTACATTTCCACCGTTCTTCTACACACCCTGCATGCAAG
CGTCTTGCGTGCTTCCCGACGAACCGTGTGGTTCTCGAAAACCAGGTGTT
TCTCGAGACACGGCTGCGGATTTTCAAATTCCCAGTTTACCAATCGCTCT
GTTGGATCACAGGTATTCATGCCTCGTCATCGCTCCACGGACGAATGTAG
ACTAGAGGTGTAGATCTACACTCGTTCACCTGGTGTATGCACGCTACGCT
GATTCATCGTCACGGGCAGAATCGTTGTTTCGCACGCCGCACGCATCGCT
GCTCTTGTTGTCCATGATGGCTCCTCGACTGACGACTGCTGTGACAGCCA
CGCCTCCTTTGACAGAAACCACTCCTCCTGCCGCCTCCCTCGTCACGTTT
TTCTTCTCAAAAAACAATACTCTTTAAACTCATTCCCCGTTGTTTGAGAA
TAGCATGGTCTTCGGGAACAAGAACGACGGCCCGGGCGGAGACCTCGAGC
GCATCACGGTCAAGAAGTTCCCGGACCAGTACCCTGCAGAGAAGGTTCTG
CAGGCGGAGCCGGTGCAGGGGGACTCCAAGGACGTCGCGGTGATTCGACC
GCTGCTCAAGCAGACAGAGCTAGGTGAGGAGAAGTCAAGTTTGGATTTCG
TGTCTTACTCTTTGTGGTCATGTATACTACATACATACGCCCTATCATGT
AGCCGGATCGTGCACACGCCCTACCGGTACATGGTGGTTTGTGTTCGTGC
AAAAGCGACGCGGTGGCGATTTCTTCGCTCAAACTGGACCGCGCTTGCAT
CTGTGTAGTTACGTCGCTGGTACGTTTGCCTTGGTCAACCGTTTCGGTGA
TGCGTTAACTCAGCGTGAATTTGTCGGGACGGCCGCCGTGCAAAAGGCAG
GCCGGACTTTCGCACTTTGCACGTGAGTGCGGATTGCGGAGTCGCGCCCG
TTGCTTGGTCACGATTGAAGACGTGAAATACCGCAATGACTCTAGCATGC
GGTCGACCACACATCCGGACGTTTCGTTCAAAAGCGTTCTGTGGAGGCGA
TACCCTTAGAAGGGTACCTACCTCCCGACACCTGTCGAGGTACAACCACC
TTTTCCACAATGGCGTCGATGAAGAGATATGTGAAGTTAAGCGGCGTCGG
GCCAGGCGATTACTACGGTGGGGGACTCGTAGCCCAGCCGCCTGAAACGT
TCGTAGGACGCACAGCTTCTCAGAACTATGGAAAAACTATCGTTGACTCG
CCGCCAGCCGGTCGGGTTCCGGTTACCCTTGGAAAGCTTCTGGCCTAGCA
AACAAGAAGCCTCAATAGAGGGGGCGGTGATGAATTTCCACAGTTCTGAT
GGTCTGTCTGAAGCGCTTGTATTCCGCGTGCTCCCTCCCACCTGTCTTTT
CTTCTCTGCCAGAGTTCCGAAAGCTCAAGCTGGTGTATGACGCAAAGCGT
AACGGCTGGAAGCCCGCGGCGTTTCACAAGGGGGTGGACTTTAAGGGGCC
CGGGATCGTGGTTGCCAAAACCAAGGGAGGAGCGGTGGTTGGAGGGTGAG
ACTGCGATACAAAAGTGGCACGGCGGGGCAGGTGGAGCGCGCTTTTTTCC
CGCATCTTGTTTTCGGAAGTTGTCCGTTGCATACCTTCTACATATGTAGA
AGAAGGAAGAAGTGTAGATAGTGCACGCTCTCGTTCTGGGACGTACGGCT
TCTCTCTTGTCCTGCCTGTGTGCCTGTGCTTTGTTTTTCAGACAAGCTAT
CAATAATGGGTCTTAGATCTGAAACGCCCATCTAGGTCCGCAACGACATG
GATGTTGACATTAGAGTGTTGGCGCTGTTTTGCTCTGTTTGCGTCTTGCC
AATGGTGCAACCCGGGTGCAGGTACAACCCGAAAGGCTGGGTGGGATACG
GTGAATACCGTCCGGGTTTGTCGGCTTTCCTCTTCACGTGGCGGGACGGG
GATACTAGCAGGAGAGCGATGAAGCTCAGAAAGGTATGTACCTTGTAGTC
GACTACGGGCGTGCATGACCGGCGCCTGGGCGGCGAGCATTAAGAGTGCT
TTGTAATACAGTAGCTCATGTTTGTGCCTAGCGCTACCCTTGGTCGTTGC
ACCGTTTAGCGGGCGTGTGCGACGACGCAGTAGGCCCGCTCGCTCGATGT
TCGATTCCACTATGTTCGTCCGAAAACTACAGCAGTGCTGTAGCTTTTTT
TGGCCCCGTTTCTGCTGCGGCCGTGTATTTTTGCGTTTTCGGTCTGCCCT
GCTCTCACCGGTACCCGCACATTCCACATGGTCCCGCTTCGTTCCAACAA
AAAAACTGTTGTTTTCGTTTCAACTCACTGACGAGTGTGAGTGTCGCCCA
TCTCCCAAACCGCTGCGTTTTTTCTTGCGCTTTGGCGGGTCCTAGATGAC
GCACTGTTGTAGGTCGTCCGGAACAACTGAATCCTATATTCGTCCCCACT
TGAAGGTACCTGCTCCTCCGTTTTTCTGGTCGTTTTCTCTTGTTGCCGTC
GGCTTCTGACAATGCGGGTGTGTTTTGGGGCAACAGATTGGCGGCGCCGG
CCTAGCTGTGTGGGATAAGCCGGAGTGTGGGCCGTTGTTTGGATCTGACG
GCTTCGGTGTCGGGCTGCAGAAAGGGTCGGAGCGATTAGGGAGGAGTAAG
CTGGGCAGGTGAGAAGAGAGGGAGGCCTTCCTCTTCTTTCTGAAGGGCTA
CAGAGTATTTTTCTTTCAAACTCTCAACGTGTTTCCTCTCTCTCTCTGTG
TGTGTGTGTGTGTGTGTGTTTTTATTTGGAAAGGGCGTTGAGCTTTGAGT
GCTCAACATGTTGACAAACCAGCCCGTTGATAGGATTGTTGTATTGGATC
ATGTAGGTGAAAAAACATCGACAACTGCGAGGTCTATTTTCCGTAGTGAT
CGGCAGTAGTGATTTGGTTTCAACCTGAAGTTAAGGACGTCGGGAGGGTG
AATTAGCGATTCAGTAATGTGTCAGTTTGTTCGCTGTAGCCCGCAGTGGG
GAGAGGCGTAAGAAGTGGTGCTCAACGGGGTCAAAATCATCTTGGGCGTT
TGCCGCGTGTTATGCCCTACGCTGGCTTTGCGATCATTTCCCCCCATGTT
TATTCGCGGCTGTATCTGCGGCGGACAATTCCTGTCTCGGATCGGGGTCC
GGAGAGGAGAACATGTGTACGTTTATCATCGACACGCTGGAATATGGAAA
ATTTCGAGATATTCTCGCGTCGTGTCTAGTAGGTGTGTGATTTCCCAGGC
GCTTGGTGCATCAGGAAATATTCGAAACGGCGCTTGTGTAGCAAGCACGA
CGGCCAGGTTCGCAACAAGCCAACCTTCCCGTGCTCCCTCCACTTCGTCG
GCGCGCATGCTGTCGGGGTTTTTGTCATCCGAAAAGCTACTACGAGCGCC
TCCCTGCGGCGTATGGGGGCAGCAGCATCTTCGCGCCGGGAGACAACGGG
GGCATGGCGGAGATCGTGGACCTCAAGGCGTACGTGGGAGTGTACGCGAA
GGGAGAAAAGATACCTTTCGACGATGCCATTCCCTTCTCTCTCAGCTGAT
TCTTTGGTGGATCCCTTTTTTGTGTTGCAGTTTTTTTGGCGTTGCTGTCC
TCAAAACGAGAGGAGCTTGACGAGAAAGAAGAAAACCAGAGAGACGGCTG
GTGGCTTTTCGTGTCCTTTGTTTTAGTTTTGGCCTTGGTGAGTAAACTCC
TGTCCTCTGCGATTCCACACACTACACCGCCCATCCTTGTGACCGTTGCT
CACGGAGGATTCGAATCCTCCATGGGCGTCAGCGTCAGATTGAGAGTCAA
CCCTTTTCTAGAGTCTTCGGCCTGTGTCCCTAAGCTCTCAAAGCGATACA
GATTGCCTTTCCAGCTCAGCGACACAGGTCGTCGACGGTAGAAACGGGAG
AGACGGCGGGCTGGTTGATTTTGGTGTCCTTTTTTTGTTCAGTTTGTAAT
TTTGTCGGTTTTAGCGGACGGGCGTGTGATGCACTGCTGCGGCTGTCGCC
TCTTTGCTTCCGTCGTTGAGGTGCGAAGAGATGAGATGCGCGTCACGAGC
GAGGAAACGACTCTTGCACTTTACGGGTGTGAAGTATACAGCTGTGCCAC
CGAAAGGAGGGCGGTTTCGAGTTCTCGTGCTGAGTTATCTGTGAGCGGTG
ATGGAGCCAGAACATTCGCCCGTGGGTCAACGCATAGGCCAAGTCTTCCG
AACCTCTCGGTGTTGCGGAAACCCACGTCCACAGGGACTACTGCCTGCCT
ACCCTCTGGGTTGATTTTCTTCCTCTCGAGAACGCCGAAAGCTTCAGGGT
GCGCTGCCTCTTCGCCTCGGGAATACCAATGCACAGCAGATTCGTGCAGG
GCGTCGGGTGCGTATGCTCGAACAACAGCAAAGCGAAGCAGCCGCGGTTT
GACCTGTTTCCAAGTTTTTCGGTTTTGACTTTTTTTGTATAATCGAACTA
GCTGAGAACACCTGCTGGGATTACCGAGGCCCCCCAACCTCATTGGAAAA
AAGAAGAAAAGCAAGATAAAAACAGTACCTTACTAATGTACATGGATACA
CAAGCCTCTTTCGCCAACGACGCACCCTCCCGCCCGGGCGTT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1027:20453..26044+

>mRNA_S-firma_F_contig1027.405.1 ID=mRNA_S-firma_F_contig1027.405.1|Name=mRNA_S-firma_F_contig1027.405.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1812bp|location=Sequence derived from alignment at S-firma_F_contig1027:20453..26044+ (Sphaerotrichia firma ET2_F female)
ATGAAAACTGCTATTGTGACTACAGCTCTGCTGTGTCTCCCGGGCGCGAC
ATCGTTTACGGCATGTGGCAGCCAAAGATGAAAACTGCTATTGTGACTAC
AGCTCTGCTGTGTCTCCCGGGCGCGACATCGTTTACGGCATGTGGCAGCC
AAAGGCCAGCTGCCATCGGAGTTGAACGCAGATCTACGAGGACGGATTCC
AGCACGTGCATGGCGGCGAAGAGAGGTGCAGGGGAGGAGGAGGTGGGGGT
GGAGCAGCAAGATGTCATCGAGAAGTTGTTCAGGCCAGCTGCCATCGGAG
TTGAACGCAGATCTACGAGGACGGATTCCAGCACGTGCATGGCGGCGAAG
AGAGGTGCAGGGGAGGAGGAGGTGGGGGTGGAGCAGCAAGATGTCATCGA
GAAGTTGTTCAGCATGGTCTTCGGGAACAAGAACGACGGCCCGGGCGGAG
ACCTCGAGCGCATCACGGTCAAGAAGTTCCCGGACCAGTACCCTGCAGAG
AAGGTTCTGCAGGCGGAGCCGGTGCAGGGGGACTCCAAGGACGTCGCGGT
GATTCGACCGCTGCTCAAGCAGACAGAGCTAGCATGGTCTTCGGGAACAA
GAACGACGGCCCGGGCGGAGACCTCGAGCGCATCACGGTCAAGAAGTTCC
CGGACCAGTACCCTGCAGAGAAGGTTCTGCAGGCGGAGCCGGTGCAGGGG
GACTCCAAGGACGTCGCGGTGATTCGACCGCTGCTCAAGCAGACAGAGCT
AGAGTTCCGAAAGCTCAAGCTGGTGTATGACGCAAAGCGTAACGGCTGGA
AGCCCGCGGCGTTTCACAAGGGGGTGGACTTTAAGGGGCCCGGGATCGTG
GTTGCCAAAACCAAGGGAGGAGCGGTGGTTGGAGGAGTTCCGAAAGCTCA
AGCTGGTGTATGACGCAAAGCGTAACGGCTGGAAGCCCGCGGCGTTTCAC
AAGGGGGTGGACTTTAAGGGGCCCGGGATCGTGGTTGCCAAAACCAAGGG
AGGAGCGGTGGTTGGAGGGTACAACCCGAAAGGCTGGGTGGGATACGGTG
AATACCGTCCGGGTTTGTCGGCTTTCCTCTTCACGTGGCGGGACGGGGAT
ACTAGCAGGAGAGCGATGAAGCTCAGAAAGGTACAACCCGAAAGGCTGGG
TGGGATACGGTGAATACCGTCCGGGTTTGTCGGCTTTCCTCTTCACGTGG
CGGGACGGGGATACTAGCAGGAGAGCGATGAAGCTCAGAAAGATTGGCGG
CGCCGGCCTAGCTGTGTGGGATAAGCCGGAGTGTGGGCCGTTGTTTGGAT
CTGACGGCTTCGGTGTCGGGCTGCAGAAAGGGTCGGAGCGATTAGGGAGG
AGTAAGCTGGGCAGATTGGCGGCGCCGGCCTAGCTGTGTGGGATAAGCCG
GAGTGTGGGCCGTTGTTTGGATCTGACGGCTTCGGTGTCGGGCTGCAGAA
AGGGTCGGAGCGATTAGGGAGGAGTAAGCTGGGCAGCTACTACGAGCGCC
TCCCTGCGGCGTATGGGGGCAGCAGCATCTTCGCGCCGGGAGACAACGGG
GGCATGGCGGAGATCGTGGACCTCAAGGCGTACGTGGGAGTGTACGCGAA
GGGAGAAAAGATACCTTTCGACGATGCCATTCCCTTCTCTCTCAGCTGAC
TACTACGAGCGCCTCCCTGCGGCGTATGGGGGCAGCAGCATCTTCGCGCC
GGGAGACAACGGGGGCATGGCGGAGATCGTGGACCTCAAGGCGTACGTGG
GAGTGTACGCGAAGGGAGAAAAGATACCTTTCGACGATGCCATTCCCTTC
TCTCTCAGCTGA
back to top