mRNA_S-firma_F_contig10269.399.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10269.399.1
Unique NamemRNA_S-firma_F_contig10269.399.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10269.399.1 vs. uniprot
Match: D7FI33_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI33_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.670e-28
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 REGLLGCLKLLATHQADLKALDANGNTALHSAAGSGAAAAAEFLLGRGLSVADKNKDGHTPM 186
            REGLLGCL+LLA H+A+LKALDANGNTALHSAAGSGAAAAA+FLLG GLSVADKNKDGHTPM
Sbjct:   13 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGCGLSVADKNKDGHTPM 74
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BLAST of mRNA_S-firma_F_contig10269.399.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.800e-27
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 REGLLGCLKLLATHQADLKALDANGNTALHSAAGSGAAAAAEFLLGRGLSVADKNKDGHTPM 186
            REGLLGCL+LLA H+A+LKALDANGNTALHSAAGSGAAAAA+FLLGRGLSVAD+NKDGHTPM
Sbjct:   61 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPM 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10269.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI33_ECTSI2.670e-2890.32Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
A0A6H5JGS5_9PHAE8.800e-2790.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10269contigS-firma_F_contig10269:90..275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008617991.1
Preferred nameZDHHC13
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,DHHC
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
GOsGO:0000003,GO:0000139,GO:0001505,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0006464,GO:0006497,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007276,GO:0007283,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0015833,GO:0016020,GO:0016079,GO:0016192,GO:0016234,GO:0016235,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0017156,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0019953,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030133,GO:0030660,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034220,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042802,GO:0042886,GO:0042953,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0044872,GO:0045055,GO:0045184,GO:0045202,GO:0046873,GO:0046903,GO:0046907,GO:0048232,GO:0048489,GO:0048518,GO:0048522,GO:0048609,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0055085,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0072511,GO:0090087,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903830,GO:1904951
Evalue0.000166
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003330.1
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.831623-CDS-S-firma_F_contig10269:89..2751622815556.831623-CDS-S-firma_F_contig10269:89..275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 90..275 -
1696949413.529178-CDS-S-firma_F_contig10269:89..2751696949413.529178-CDS-S-firma_F_contig10269:89..275Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10269 90..275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10269.399.1prot_S-firma_F_contig10269.399.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10269 90..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10269.399.1

>prot_S-firma_F_contig10269.399.1 ID=prot_S-firma_F_contig10269.399.1|Name=mRNA_S-firma_F_contig10269.399.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=62bp
REGLLGCLKLLATHQADLKALDANGNTALHSAAGSGAAAAAEFLLGRGLS
VADKNKDGHTPM
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mRNA from alignment at S-firma_F_contig10269:90..275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10269.399.1 ID=mRNA_S-firma_F_contig10269.399.1|Name=mRNA_S-firma_F_contig10269.399.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=186bp|location=Sequence derived from alignment at S-firma_F_contig10269:90..275- (Sphaerotrichia firma ET2_F female)
CGGGAGGGCCTCCTGGGCTGCCTCAAGCTCCTGGCGACCCACCAGGCCGA
CCTCAAGGCCCTCGACGCGAACGGCAATACGGCGCTGCACTCGGCCGCGG
GGTCGGGGGCGGCGGCGGCGGCGGAGTTCCTGCTGGGGCGCGGGCTGTCG
GTGGCGGACAAGAACAAGGATGGGCACACGCCGATG
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Coding sequence (CDS) from alignment at S-firma_F_contig10269:90..275-

>mRNA_S-firma_F_contig10269.399.1 ID=mRNA_S-firma_F_contig10269.399.1|Name=mRNA_S-firma_F_contig10269.399.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=372bp|location=Sequence derived from alignment at S-firma_F_contig10269:90..275- (Sphaerotrichia firma ET2_F female)
CGGGAGGGCCTCCTGGGCTGCCTCAAGCTCCTGGCGACCCACCAGGCCGA
CCTCAAGGCCCTCGACGCGAACGGCAATACGGCGCTGCACTCGGCCGCGG
GGTCGGGGGCGGCGGCGGCGGCGGAGTTCCTGCTGGGGCGCGGGCTGTCG
GTGGCGGACAAGAACAAGGATGGGCACACGCCGATGCGGGAGGGCCTCCT
GGGCTGCCTCAAGCTCCTGGCGACCCACCAGGCCGACCTCAAGGCCCTCG
ACGCGAACGGCAATACGGCGCTGCACTCGGCCGCGGGGTCGGGGGCGGCG
GCGGCGGCGGAGTTCCTGCTGGGGCGCGGGCTGTCGGTGGCGGACAAGAA
CAAGGATGGGCACACGCCGATG
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