mRNA_S-firma_F_contig10262.395.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10262.395.1
Unique NamemRNA_S-firma_F_contig10262.395.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10262.395.1 vs. uniprot
Match: D3BKI5_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BKI5_POLPP)

HSP 1 Score: 63.2 bits (152), Expect = 1.470e-8
Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 1 
Query:   37 AHIEAEVERVQSEDRDYLYIDELVDVSSPEELPLAFDHVATLFTLDAGLTGTWPKEDILRHVH-ECSQRRRLMHRHEFASRVVGDSVKAMVVAI-RERGAGHVVHWFVQALAVRYPPLELPTTEGGTYRLLHLDAVFVLHRVLCLGLVGALSYRDMVDMLQQASEAHGLLNVDDESLDDHVAEAVVRSF 597
            ++I  E +RV    +DYL +DEL+++  P E  +   H+ TLF +D   TG + + DIL       SQ  +   + +F S+        M   I +  G    V WF +   +  P              L  DA+  ++++L +       +R   D++Q+ +E  G++ +D++ LDD V   ++++F
Sbjct:    6 SNISDEFKRVNKNGKDYLVLDELLEMQPPRECTIDTSHLGTLFAIDRRQTGRFYESDILEFSRLYASQLLQNGGKDDFQSKFQAYCTLKMWNEISKPEGTDLFVEWFSKLFTLN-PNYVQTFKHHQDITFLTSDAINKMYQILSIKNYYGGDFRSFFDLMQRTAEEQGIMKLDEDELDDVVPLVILKNF 193
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BLAST of mRNA_S-firma_F_contig10262.395.1 vs. uniprot
Match: A0A7J6LVM9_PEROL (Uncharacterized protein n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LVM9_PEROL)

HSP 1 Score: 58.2 bits (139), Expect = 1.050e-6
Identity = 47/186 (25.27%), Postives = 87/186 (46.77%), Query Frame = 1 
Query:   76 DRDYLYIDELVDVSSPEELPLAFDHVATLFTLDAGLTGTWPKEDILRHVHECSQRRRLMHRHEFASRVVGDSVKAMVVAIRERGAGHVVH-WFVQALAVRYPPLELPTTEGGTYRLLHLDAVFVLHRVLCLGLVGALSYRDM---VDMLQQASEAHGLLNVDDESLDDHVAEAVVRSFLTALLQSY 621
            DR  LY++E+ ++ +P+++ +  +H+A L+ +DA   G     +++     C+   +    ++F   +    V  M   +       +   W  + +A        P+  G  +  +  DAV+ LH  L    +    +RD    +D+LQ+ SE   L+ +DDE LDD+V  A V+ FL    +SY
Sbjct:   54 DRQVLYLNEIRNLRTPQDVSIDLNHMAILWKMDAARDGVVDSTELMGFAEYCNGLFKTYGSYDFKEYLQAHCVVDMYNDVFASSDYSLFSDWICRLVAQGERTTTFPSYPGVKF--MTRDAVYHLHTFLQQYHIA--DFRDQQGFLDLLQEVSEGMELMTLDDEHLDDYVPVATVQLFLVNFARSY 235
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BLAST of mRNA_S-firma_F_contig10262.395.1 vs. uniprot
Match: A0A7S1T0U7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T0U7_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 2.200e-6
Identity = 48/198 (24.24%), Postives = 90/198 (45.45%), Query Frame = 1 
Query:   28 SLRAHIEAEVERVQSEDRDYLYIDELVDVSSPE-ELPLAFDHVATLFTLDAGLTGTWPKEDILRHVHECSQRRRLMHRHEFASRVVGDSVKAMVVAIRERGAGH--VVHWFVQALAVRYPPLELPTTEGGTYRLLHLDAVFVLHRVLCLGLVGALSYRDMVDMLQQASEAHGLLNVDDESLDDHVAEAVVRSFLTALL 612
            S +  I  E +R++ E R+YL +DEL+ +  P  +  +   + + +F LD    G +  E++        +R RL   +E+ S + G     M  A+   G GH     W    +       E     G  Y  +  D++  L+ V+ +     L ++   D+LQ+++E  GL+++ +E  DD +   VV  F  +++
Sbjct:   15 SFKRCIAEEYQRLKKEGREYLTVDELIQLKLPRSQWTVNLKNFSVMFVLDRNKDGRFTLEELQSFYELACERARLYQTYEYMSMMHGYCTLLMWRAV-SGGGGHSEFSDWVCNLMRQCNDTEEFEHHPGVQY--VSRDSIETLYHVMGVQESQGLDFQSFFDLLQRSAEEKGLMDLQNEEQDDFLPLQVVAEFAQSMI 209
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10262.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D3BKI5_POLPP1.470e-825.40Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A7J6LVM9_PEROL1.050e-625.27Uncharacterized protein n=4 Tax=Perkinsus olseni T... [more]
A0A7S1T0U7_9CHLO2.200e-624.24Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10262contigS-firma_F_contig10262:1203..2035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog55529.EKX38081
Max annot lvl2759|Eukaryota
Evalue4.57e-19
EggNOG OGs2DKED@1|root,2S62M@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size642
Cds size642
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.4879293-CDS-S-firma_F_contig10262:1202..17541622815556.4879293-CDS-S-firma_F_contig10262:1202..1754Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 1203..1754 -
1696949413.3714352-CDS-S-firma_F_contig10262:1202..17541696949413.3714352-CDS-S-firma_F_contig10262:1202..1754Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 1203..1754 -
1622815556.501966-CDS-S-firma_F_contig10262:1945..20351622815556.501966-CDS-S-firma_F_contig10262:1945..2035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 1946..2035 -
1696949413.381502-CDS-S-firma_F_contig10262:1945..20351696949413.381502-CDS-S-firma_F_contig10262:1945..2035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 1946..2035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10262.395.1prot_S-firma_F_contig10262.395.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10262 1203..2035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10262.395.1

>prot_S-firma_F_contig10262.395.1 ID=prot_S-firma_F_contig10262.395.1|Name=mRNA_S-firma_F_contig10262.395.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=214bp
MGAAASVQPSLRAHIEAEVERVQSEDRDYLYIDELVDVSSPEELPLAFDH
VATLFTLDAGLTGTWPKEDILRHVHECSQRRRLMHRHEFASRVVGDSVKA
MVVAIRERGAGHVVHWFVQALAVRYPPLELPTTEGGTYRLLHLDAVFVLH
RVLCLGLVGALSYRDMVDMLQQASEAHGLLNVDDESLDDHVAEAVVRSFL
TALLQSYAASLPTI
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mRNA from alignment at S-firma_F_contig10262:1203..2035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10262.395.1 ID=mRNA_S-firma_F_contig10262.395.1|Name=mRNA_S-firma_F_contig10262.395.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=833bp|location=Sequence derived from alignment at S-firma_F_contig10262:1203..2035- (Sphaerotrichia firma ET2_F female)
ATGGGCGCCGCTGCGTCGGTGCAGCCCTCCCTGCGGGCCCACATTGAGGC
AGAGGTTGAAAGGGTGCAGAGTGAGGACAGAGACTACCTGGTATGGCGCG
TGTGTGTTTTGCAACTGACTGCACCCAGCTTGCCCCGTGCTTGTGTATGG
CAGTGTGATTTAGGAGTATGTGTGTATGTGTGTGGCAGTGTGGCAGTGTG
GCAGTGTGTGTGCATAAGGTTTTCTTTGCGTGTTCTCTTTTTGGTGTTGC
ATGTGTTCTTCGAGTTTAAATGCCCCCACAGTACATTGACGAGCTTGTGG
ACGTGTCGTCCCCCGAAGAGCTTCCGCTGGCCTTTGACCACGTCGCCACG
CTGTTCACGCTGGACGCTGGCCTCACGGGGACGTGGCCCAAGGAGGACAT
CCTTCGGCACGTCCACGAGTGCAGCCAGCGGCGGCGCCTCATGCACCGCC
ACGAGTTTGCGTCGCGGGTGGTTGGTGACAGCGTCAAGGCCATGGTGGTC
GCCATTCGGGAGCGGGGCGCAGGCCACGTCGTGCACTGGTTTGTGCAGGC
GCTGGCGGTGAGGTACCCGCCGTTGGAGCTGCCCACCACGGAGGGCGGCA
CATACCGCCTCCTCCACCTGGACGCCGTGTTTGTGCTGCACCGCGTGCTG
TGCTTGGGGCTTGTGGGCGCCTTGTCCTACCGGGACATGGTGGACATGCT
GCAGCAGGCCTCTGAGGCGCACGGCCTCCTCAATGTCGACGACGAGTCCC
TGGACGACCACGTTGCGGAGGCTGTCGTGCGGTCGTTTTTGACTGCCCTC
CTGCAGTCGTACGCGGCCAGTCTGCCCACCATT
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Coding sequence (CDS) from alignment at S-firma_F_contig10262:1203..2035-

>mRNA_S-firma_F_contig10262.395.1 ID=mRNA_S-firma_F_contig10262.395.1|Name=mRNA_S-firma_F_contig10262.395.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1284bp|location=Sequence derived from alignment at S-firma_F_contig10262:1203..2035- (Sphaerotrichia firma ET2_F female)
ATGGGCGCCGCTGCGTCGGTGCAGCCCTCCCTGCGGGCCCACATTGAGGC
AGAGGTTGAAAGGGTGCAGAGTGAGGACAGAGACTACCTGATGGGCGCCG
CTGCGTCGGTGCAGCCCTCCCTGCGGGCCCACATTGAGGCAGAGGTTGAA
AGGGTGCAGAGTGAGGACAGAGACTACCTGTACATTGACGAGCTTGTGGA
CGTGTCGTCCCCCGAAGAGCTTCCGCTGGCCTTTGACCACGTCGCCACGC
TGTTCACGCTGGACGCTGGCCTCACGGGGACGTGGCCCAAGGAGGACATC
CTTCGGCACGTCCACGAGTGCAGCCAGCGGCGGCGCCTCATGCACCGCCA
CGAGTTTGCGTCGCGGGTGGTTGGTGACAGCGTCAAGGCCATGGTGGTCG
CCATTCGGGAGCGGGGCGCAGGCCACGTCGTGCACTGGTTTGTGCAGGCG
CTGGCGGTGAGGTACCCGCCGTTGGAGCTGCCCACCACGGAGGGCGGCAC
ATACCGCCTCCTCCACCTGGACGCCGTGTTTGTGCTGCACCGCGTGCTGT
GCTTGGGGCTTGTGGGCGCCTTGTCCTACCGGGACATGGTGGACATGCTG
CAGCAGGCCTCTGAGGCGCACGGCCTCCTCAATGTCGACGACGAGTCCCT
GGACGACCACGTTGCGGAGGCTGTCGTGCGGTCGTTTTTGACTGCCCTCC
TGCAGTCGTACGCGGCCAGTCTGCCCACCATTTACATTGACGAGCTTGTG
GACGTGTCGTCCCCCGAAGAGCTTCCGCTGGCCTTTGACCACGTCGCCAC
GCTGTTCACGCTGGACGCTGGCCTCACGGGGACGTGGCCCAAGGAGGACA
TCCTTCGGCACGTCCACGAGTGCAGCCAGCGGCGGCGCCTCATGCACCGC
CACGAGTTTGCGTCGCGGGTGGTTGGTGACAGCGTCAAGGCCATGGTGGT
CGCCATTCGGGAGCGGGGCGCAGGCCACGTCGTGCACTGGTTTGTGCAGG
CGCTGGCGGTGAGGTACCCGCCGTTGGAGCTGCCCACCACGGAGGGCGGC
ACATACCGCCTCCTCCACCTGGACGCCGTGTTTGTGCTGCACCGCGTGCT
GTGCTTGGGGCTTGTGGGCGCCTTGTCCTACCGGGACATGGTGGACATGC
TGCAGCAGGCCTCTGAGGCGCACGGCCTCCTCAATGTCGACGACGAGTCC
CTGGACGACCACGTTGCGGAGGCTGTCGTGCGGTCGTTTTTGACTGCCCT
CCTGCAGTCGTACGCGGCCAGTCTGCCCACCATT
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