mRNA_S-firma_F_contig10262.394.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: UPI0019BAB169 (PAS domain S-box protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019BAB169) HSP 1 Score: 77.8 bits (190), Expect = 1.100e-14 Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
V+ DE +++ IL+NLLTNA KYSP GG + +S A +L+L V+DQG GIP++ +K +F+ F R Q G GLGL + T+V+A GG I
Sbjct: 545 VMADEKLLNHILINLLTNAVKYSPRGGEIRLELSKAD-DDLILRVSDQGLGIPEEDQKHLFEPFHRASNTQQINGVGLGLVIALTSVEAWGGTI 637
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A399Z0J0_9CHLR (Sensor histidine kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z0J0_9CHLR) HSP 1 Score: 76.6 bits (187), Expect = 2.790e-14 Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
D + ++L+NLLTNA KYSP+G S + + + H + L V+DQG GIP+D++ VF+AF R D + G+GLGLA+V +V LGG +
Sbjct: 552 DRRLFEQVLINLLTNAVKYSPAGTTVSAEICVDTDH-MTLRVSDQGIGIPEDERHRVFEAFHRADNASGIEGTGLGLAIVKQSVTQLGGEV 641
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A1M5U705_9CLOT (Histidine kinase n=4 Tax=Clostridium TaxID=1485 RepID=A0A1M5U705_9CLOT) HSP 1 Score: 76.3 bits (186), Expect = 3.810e-14 Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVS---LASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRD--AQSPGSGLGLAMVATAVKALGGNI 285
VL+DE + RIL NLL+NA K++P G + SV +S ++ LV+EV D+G GIP +K+K+VF+ F ++D +Q+ G+GLGL +V VK L GN+
Sbjct: 520 VLLDEEKLERILFNLLSNALKFTPEGKSISVNLSSDVISKEELLVIEVKDEGIGIPKEKQKVVFERFGQVDSSLSSQAEGTGLGLYLVCLLVKTLKGNL 618
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A6L3ETF7_9CHLR (Histidine kinase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3ETF7_9CHLR) HSP 1 Score: 72.0 bits (175), Expect = 3.900e-14 Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHE----LVLEVADQGAGIPDDKKKLVFKAFSRLDR-DAQSPGSGLGLAMVATAVKALGGNI 285
+ I+E ++ R+L+NL+TNA KYS S S+ +S A++H+ ++L V+DQG GIP +++VF+ F R+ R D+ S G GLGLA AV+A G I
Sbjct: 11 IFIEEDMIRRVLINLITNALKYSQSSK--SITISAAASHDNGESVLLSVSDQGQGIPQKYRQIVFEKFERIKRGDSDSKGLGLGLAFCRLAVEAHNGRI 107
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A173LQR3_9ACTN (Histidine kinase n=1 Tax=Dietzia timorensis TaxID=499555 RepID=A0A173LQR3_9ACTN) HSP 1 Score: 74.7 bits (182), Expect = 1.310e-13 Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
D+ R L+NL NA K+SPSGG +V +S AS + L L+VADQG GIP+ ++LVF+ F R PGSGLGLA+V V GG I
Sbjct: 436 DDSAWERALLNLCDNAAKWSPSGGTVTVRMS-ASDNLLTLDVADQGPGIPEADRELVFERFYRATESRTMPGSGLGLAIVRQVVVKHGGTI 525
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A7W7IQ69_9CAUL (Histidine kinase n=5 Tax=Brevundimonas TaxID=41275 RepID=A0A7W7IQ69_9CAUL) HSP 1 Score: 74.3 bits (181), Expect = 1.730e-13 Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
++P +++ L N++ NA KY+PSGGA S+ E+ V D G G+PD+ ++ V + F RLD PGSGLGL++V +A GG +
Sbjct: 352 NQPFLAQALANIIDNAIKYTPSGGAVKFRARRRSSGEIEFSVTDTGPGVPDEDRERVLQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 442
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A2S8W9N5_9CAUL (Histidine kinase n=2 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A2S8W9N5_9CAUL) HSP 1 Score: 74.3 bits (181), Expect = 1.730e-13 Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
++P +++ L N++ NA KY+PSGGA S+ E+ V D G G+PD+ ++ V + F RLD PGSGLGL++V +A GG +
Sbjct: 348 NQPFLAQALANIIDNAIKYTPSGGAVKFRARRRSSGEIEFSVTDTGPGVPDEDRERVLQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 438
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A2D8FMY7_9CAUL (Histidine kinase (Fragment) n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A2D8FMY7_9CAUL) HSP 1 Score: 73.6 bits (179), Expect = 1.780e-13 Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
++P +++ L NL+ NA KY+PSGGA + S+ E+ V D G G+P++ ++ V + F RLD PGSGLGL++V +A GG +
Sbjct: 184 NQPFLAQALANLIDNAIKYTPSGGAVKLRARRRSSGEIEYSVTDTGPGVPEEDRERVVQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 274
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A258NW39_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. 35-63-35 TaxID=1970418 RepID=A0A258NW39_9BURK) HSP 1 Score: 73.9 bits (180), Expect = 2.520e-13 Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
DE ++ IL NLL+NA KYSP GG V LA +LVLEV+D G GIP D+ +F++F R PG+GLGLA+V AV GG I
Sbjct: 823 DEKLLRHILGNLLSNAVKYSPLGGVVLCRVFLAD-RQLVLEVSDNGIGIPADEITHLFESFHRASNVGAIPGTGLGLAIVKNAVDLYGGTI 912
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: UPI00034D4A0C (ATP-binding protein n=1 Tax=Geminocystis herdmanii TaxID=669359 RepID=UPI00034D4A0C) HSP 1 Score: 73.6 bits (179), Expect = 2.630e-13 Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 1 TVLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
TV +D+ I++ IL NLL+NA KYSP GG ++ + L H+ VLE+ D+G GIP+D + +F F R G+GLGL++V AV+ GG I
Sbjct: 253 TVYLDQKILNHILNNLLSNAIKYSPEGGKVTLNL-LCEKHQFVLEIEDEGIGIPEDYQAKLFTLFERGSNVGSIKGNGLGLSIVKKAVELHGGKI 346 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10262.394.1 >prot_S-firma_F_contig10262.394.1 ID=prot_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=95bp TVLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGback to top mRNA from alignment at S-firma_F_contig10262:191..475+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10262.394.1 ID=mRNA_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=285bp|location=Sequence derived from alignment at S-firma_F_contig10262:191..475+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10262:191..475+ >mRNA_S-firma_F_contig10262.394.1 ID=mRNA_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=570bp|location=Sequence derived from alignment at S-firma_F_contig10262:191..475+ (Sphaerotrichia firma ET2_F female)back to top |