mRNA_S-firma_F_contig10262.394.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10262.394.1
Unique NamemRNA_S-firma_F_contig10262.394.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: UPI0019BAB169 (PAS domain S-box protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019BAB169)

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-14
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            V+ DE +++ IL+NLLTNA KYSP GG   + +S A   +L+L V+DQG GIP++ +K +F+ F R     Q  G GLGL +  T+V+A GG I
Sbjct:  545 VMADEKLLNHILINLLTNAVKYSPRGGEIRLELSKAD-DDLILRVSDQGLGIPEEDQKHLFEPFHRASNTQQINGVGLGLVIALTSVEAWGGTI 637          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A399Z0J0_9CHLR (Sensor histidine kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z0J0_9CHLR)

HSP 1 Score: 76.6 bits (187), Expect = 2.790e-14
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            D  +  ++L+NLLTNA KYSP+G   S  + + + H + L V+DQG GIP+D++  VF+AF R D  +   G+GLGLA+V  +V  LGG +
Sbjct:  552 DRRLFEQVLINLLTNAVKYSPAGTTVSAEICVDTDH-MTLRVSDQGIGIPEDERHRVFEAFHRADNASGIEGTGLGLAIVKQSVTQLGGEV 641          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A1M5U705_9CLOT (Histidine kinase n=4 Tax=Clostridium TaxID=1485 RepID=A0A1M5U705_9CLOT)

HSP 1 Score: 76.3 bits (186), Expect = 3.810e-14
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVS---LASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRD--AQSPGSGLGLAMVATAVKALGGNI 285
            VL+DE  + RIL NLL+NA K++P G + SV +S   ++    LV+EV D+G GIP +K+K+VF+ F ++D    +Q+ G+GLGL +V   VK L GN+
Sbjct:  520 VLLDEEKLERILFNLLSNALKFTPEGKSISVNLSSDVISKEELLVIEVKDEGIGIPKEKQKVVFERFGQVDSSLSSQAEGTGLGLYLVCLLVKTLKGNL 618          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A6L3ETF7_9CHLR (Histidine kinase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3ETF7_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-14
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    4 VLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHE----LVLEVADQGAGIPDDKKKLVFKAFSRLDR-DAQSPGSGLGLAMVATAVKALGGNI 285
            + I+E ++ R+L+NL+TNA KYS S    S+ +S A++H+    ++L V+DQG GIP   +++VF+ F R+ R D+ S G GLGLA    AV+A  G I
Sbjct:   11 IFIEEDMIRRVLINLITNALKYSQSSK--SITISAAASHDNGESVLLSVSDQGQGIPQKYRQIVFEKFERIKRGDSDSKGLGLGLAFCRLAVEAHNGRI 107          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A173LQR3_9ACTN (Histidine kinase n=1 Tax=Dietzia timorensis TaxID=499555 RepID=A0A173LQR3_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.310e-13
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            D+    R L+NL  NA K+SPSGG  +V +S AS + L L+VADQG GIP+  ++LVF+ F R       PGSGLGLA+V   V   GG I
Sbjct:  436 DDSAWERALLNLCDNAAKWSPSGGTVTVRMS-ASDNLLTLDVADQGPGIPEADRELVFERFYRATESRTMPGSGLGLAIVRQVVVKHGGTI 525          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A7W7IQ69_9CAUL (Histidine kinase n=5 Tax=Brevundimonas TaxID=41275 RepID=A0A7W7IQ69_9CAUL)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-13
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            ++P +++ L N++ NA KY+PSGGA        S+ E+   V D G G+PD+ ++ V + F RLD     PGSGLGL++V    +A GG +
Sbjct:  352 NQPFLAQALANIIDNAIKYTPSGGAVKFRARRRSSGEIEFSVTDTGPGVPDEDRERVLQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 442          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A2S8W9N5_9CAUL (Histidine kinase n=2 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A2S8W9N5_9CAUL)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-13
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            ++P +++ L N++ NA KY+PSGGA        S+ E+   V D G G+PD+ ++ V + F RLD     PGSGLGL++V    +A GG +
Sbjct:  348 NQPFLAQALANIIDNAIKYTPSGGAVKFRARRRSSGEIEFSVTDTGPGVPDEDRERVLQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 438          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A2D8FMY7_9CAUL (Histidine kinase (Fragment) n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A2D8FMY7_9CAUL)

HSP 1 Score: 73.6 bits (179), Expect = 1.780e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            ++P +++ L NL+ NA KY+PSGGA  +     S+ E+   V D G G+P++ ++ V + F RLD     PGSGLGL++V    +A GG +
Sbjct:  184 NQPFLAQALANLIDNAIKYTPSGGAVKLRARRRSSGEIEYSVTDTGPGVPEEDRERVVQRFVRLDNSRTEPGSGLGLSLVTAVAEAHGGRV 274          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: A0A258NW39_9BURK (Histidine kinase n=1 Tax=Polaromonas sp. 35-63-35 TaxID=1970418 RepID=A0A258NW39_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 2.520e-13
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   13 DEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            DE ++  IL NLL+NA KYSP GG     V LA   +LVLEV+D G GIP D+   +F++F R       PG+GLGLA+V  AV   GG I
Sbjct:  823 DEKLLRHILGNLLSNAVKYSPLGGVVLCRVFLAD-RQLVLEVSDNGIGIPADEITHLFESFHRASNVGAIPGTGLGLAIVKNAVDLYGGTI 912          
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Match: UPI00034D4A0C (ATP-binding protein n=1 Tax=Geminocystis herdmanii TaxID=669359 RepID=UPI00034D4A0C)

HSP 1 Score: 73.6 bits (179), Expect = 2.630e-13
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 TVLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQGAGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI 285
            TV +D+ I++ IL NLL+NA KYSP GG  ++ + L   H+ VLE+ D+G GIP+D +  +F  F R        G+GLGL++V  AV+  GG I
Sbjct:  253 TVYLDQKILNHILNNLLSNAIKYSPEGGKVTLNL-LCEKHQFVLEIEDEGIGIPEDYQAKLFTLFERGSNVGSIKGNGLGLSIVKKAVELHGGKI 346          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10262.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019BAB1691.100e-1446.81PAS domain S-box protein n=1 Tax=Chitinophagaceae ... [more]
A0A399Z0J0_9CHLR2.790e-1445.05Sensor histidine kinase n=1 Tax=Chloroflexi bacter... [more]
A0A1M5U705_9CLOT3.810e-1445.45Histidine kinase n=4 Tax=Clostridium TaxID=1485 Re... [more]
A0A6L3ETF7_9CHLR3.900e-1443.43Histidine kinase domain-containing protein n=1 Tax... [more]
A0A173LQR3_9ACTN1.310e-1349.45Histidine kinase n=1 Tax=Dietzia timorensis TaxID=... [more]
A0A7W7IQ69_9CAUL1.730e-1339.56Histidine kinase n=5 Tax=Brevundimonas TaxID=41275... [more]
A0A2S8W9N5_9CAUL1.730e-1339.56Histidine kinase n=2 Tax=unclassified Brevundimona... [more]
A0A2D8FMY7_9CAUL1.780e-1339.56Histidine kinase (Fragment) n=1 Tax=Brevundimonas ... [more]
A0A258NW39_9BURK2.520e-1349.45Histidine kinase n=1 Tax=Polaromonas sp. 35-63-35 ... [more]
UPI00034D4A0C2.630e-1344.21ATP-binding protein n=1 Tax=Geminocystis herdmanii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10262contigS-firma_F_contig10262:191..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog272134.KB731324_gene3119
PFAMsCBS,GAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg
Max annot lvl2|Bacteria
KEGG koko:K07636
KEGG Pathwayko02020,map02020
KEGG ModuleM00434
Evalue2.36e-14
EggNOG OGsCOG5002@1|root,COG5002@2|Bacteria
EC2.7.13.3
Descriptionprotein histidine kinase activity
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.4503615-CDS-S-firma_F_contig10262:190..4751622815556.4503615-CDS-S-firma_F_contig10262:190..475Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 191..475 +
1696949413.360129-CDS-S-firma_F_contig10262:190..4751696949413.360129-CDS-S-firma_F_contig10262:190..475Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10262 191..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10262.394.1prot_S-firma_F_contig10262.394.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10262 191..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10262.394.1

>prot_S-firma_F_contig10262.394.1 ID=prot_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=95bp
TVLIDEPIVSRILMNLLTNARKYSPSGGAASVAVSLASAHELVLEVADQG
AGIPDDKKKLVFKAFSRLDRDAQSPGSGLGLAMVATAVKALGGNI
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mRNA from alignment at S-firma_F_contig10262:191..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10262.394.1 ID=mRNA_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=285bp|location=Sequence derived from alignment at S-firma_F_contig10262:191..475+ (Sphaerotrichia firma ET2_F female)
ACCGTGCTCATCGACGAGCCTATCGTGTCGCGAATCCTCATGAACCTTTT GACCAACGCGCGGAAGTACAGCCCCTCTGGGGGAGCCGCTTCCGTTGCTG TTTCCCTGGCGTCGGCGCACGAGTTGGTGCTTGAGGTCGCGGACCAGGGC GCTGGCATCCCTGACGATAAAAAGAAGCTGGTGTTCAAAGCATTTTCGCG ACTGGACCGCGACGCGCAGTCGCCTGGGAGCGGGCTTGGCCTTGCCATGG TGGCCACCGCCGTCAAAGCCCTGGGGGGCAACATC
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Coding sequence (CDS) from alignment at S-firma_F_contig10262:191..475+

>mRNA_S-firma_F_contig10262.394.1 ID=mRNA_S-firma_F_contig10262.394.1|Name=mRNA_S-firma_F_contig10262.394.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=570bp|location=Sequence derived from alignment at S-firma_F_contig10262:191..475+ (Sphaerotrichia firma ET2_F female)
ACCGTGCTCATCGACGAGCCTATCGTGTCGCGAATCCTCATGAACCTTTT
GACCAACGCGCGGAAGTACAGCCCCTCTGGGGGAGCCGCTTCCGTTGCTG
TTTCCCTGGCGTCGGCGCACGAGTTGGTGCTTGAGGTCGCGGACCAGGGC
GCTGGCATCCCTGACGATAAAAAGAAGCTGGTGTTCAAAGCATTTTCGCG
ACTGGACCGCGACGCGCAGTCGCCTGGGAGCGGGCTTGGCCTTGCCATGG
TGGCCACCGCCGTCAAAGCCCTGGGGGGCAACATCACCGTGCTCATCGAC
GAGCCTATCGTGTCGCGAATCCTCATGAACCTTTTGACCAACGCGCGGAA
GTACAGCCCCTCTGGGGGAGCCGCTTCCGTTGCTGTTTCCCTGGCGTCGG
CGCACGAGTTGGTGCTTGAGGTCGCGGACCAGGGCGCTGGCATCCCTGAC
GATAAAAAGAAGCTGGTGTTCAAAGCATTTTCGCGACTGGACCGCGACGC
GCAGTCGCCTGGGAGCGGGCTTGGCCTTGCCATGGTGGCCACCGCCGTCA
AAGCCCTGGGGGGCAACATC
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