mRNA_S-firma_F_contig10255.389.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10255.389.1
Unique NamemRNA_S-firma_F_contig10255.389.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10255.389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10255contigS-firma_F_contig10255:2585..4617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2033
Cds size1896
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.618975-UTR-S-firma_F_contig10255:2584..27211622815555.618975-UTR-S-firma_F_contig10255:2584..2721Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10255 2585..2721 +
1696949412.6952326-UTR-S-firma_F_contig10255:2584..27211696949412.6952326-UTR-S-firma_F_contig10255:2584..2721Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10255 2585..2721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.6315863-CDS-S-firma_F_contig10255:2721..46171622815555.6315863-CDS-S-firma_F_contig10255:2721..4617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10255 2722..4617 +
1696949412.7071142-CDS-S-firma_F_contig10255:2721..46171696949412.7071142-CDS-S-firma_F_contig10255:2721..4617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10255 2722..4617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10255.389.1prot_S-firma_F_contig10255.389.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10255 2722..4617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10255.389.1

>prot_S-firma_F_contig10255.389.1 ID=prot_S-firma_F_contig10255.389.1|Name=mRNA_S-firma_F_contig10255.389.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=632bp
MPRSPPTIHNVYSCLRCPHVKNTNAIKPARDDGMVSRGHTDHVDTRRACK
KVQKVPQRALCCGPALPTSRRLRRIDATVSAKTSTPARGHLHTGAATPVL
LDTARCCSLNLALESSSPLTSSTRTQLQPFCVQHQAVAAVALESFSPRTS
STRTQLQPFCAPSSTAVVKKITASISYVLPDRNTKGASLNKVTKSRLNEA
PSSAGLSLVPASNGVFKHKVASVSCLAFRRETMWLTARRIPLLPLAPPPQ
RSASHPRLRVLGAELALRAPPLPERRAVRAARVAAPLAGVARDHTLLSVH
AAVLAPAASRLAERCSRATALELAPLDDDIDHAGLGVLGAEQGSLGAFHP
VRRLLAALVAGALPRVGYAEVHHAVLCVLPAELALLRGRGAVRLKRGAPR
VKALLVPDVEHALQGVHATRHGPLPREGESSVLAAAGVGTLLDYDVHHPV
LDVLGAKPGSLGAVHAKRGLSGAVFVLAELGVEVDHPLGRVPLAEVSFAA
ARQPVRGVCAAARLVEAPLGEDVHHSLRSVLGAELSSPAAAHAERGLLVA
AFLLAPLDVEADRPFLAVDVAEGRPLVAASDAVGRPLVAAFLGAPHHHVV
LPLLPFPFLPSLLRVTSERARGDRPLQVTGDV
back to top

mRNA from alignment at S-firma_F_contig10255:2585..4617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10255.389.1 ID=mRNA_S-firma_F_contig10255.389.1|Name=mRNA_S-firma_F_contig10255.389.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2033bp|location=Sequence derived from alignment at S-firma_F_contig10255:2585..4617+ (Sphaerotrichia firma ET2_F female)
CGCCAATTCGGACCAGAGTCCAGCGTTTGTTGACCAGTTCAAGTTTCTCA
ATAACCCCCTCAACACTGGACACCCTTCACTGGTATGGCCTTCACACAAG
GAGTGCAAAATAGGCGAGTTCTATACAGAACCTTAGCATGCCGCGATCAC
CACCAACAATCCACAACGTGTATTCATGTTTGCGCTGCCCACACGTGAAA
AACACAAACGCTATCAAACCGGCACGCGACGACGGCATGGTTTCAAGGGG
CCATACCGACCATGTAGACACCAGGAGAGCTTGCAAAAAAGTCCAAAAAG
TCCCACAGCGGGCGTTGTGCTGCGGGCCGGCACTACCGACCTCACGCCGC
CTGCGTAGAATAGACGCTACTGTATCAGCCAAGACAAGCACGCCGGCACG
GGGACATCTGCACACCGGTGCTGCTACACCGGTGCTGCTGGACACGGCAC
GCTGTTGCAGCCTTAACTTAGCCTTGGAAAGCTCCTCTCCTCTTACTTCC
TCCACACGGACTCAGCTCCAGCCTTTTTGTGTGCAGCACCAAGCTGTTGC
AGCCGTAGCCTTGGAAAGCTTCTCTCCTCGTACTTCCTCAACGCGGACTC
AGCTCCAGCCTTTTTGTGCGCCATCCTCAACAGCAGTTGTGAAAAAGATT
ACGGCATCAATATCGTACGTACTTCCAGACCGGAACACCAAAGGAGCCTC
GCTCAACAAAGTCACCAAAAGCCGCCTGAACGAAGCACCCTCCTCTGCAG
GTCTATCTCTGGTGCCAGCCAGCAATGGCGTCTTCAAACATAAGGTGGCA
AGCGTCTCTTGTCTTGCGTTCCGCAGGGAAACCATGTGGCTAACGGCGCG
CCGCATCCCACTCCTGCCGCTCGCCCCACCCCCGCAGAGAAGTGCGAGTC
ATCCCCGCCTTCGCGTGCTCGGCGCAGAACTCGCGCTTCGTGCTCCCCCA
CTGCCCGAACGTCGCGCCGTTCGGGCAGCCCGGGTGGCCGCACCGCTTGC
GGGCGTAGCTCGGGACCATACCCTCCTTAGCGTGCACGCGGCAGTACTCG
CGCCTGCTGCTTCCCGGTTGGCCGAACGATGCAGCCGTGCCACAGCCCTC
GAACTGGCACCTCTTGATGACGACATTGACCATGCCGGCCTCGGCGTGCT
TGGCGCAGAACAGGGCAGTCTTGGTGCCTTTCACCCCGTACGACGGCTGC
TTGCTGCACTCGTTGCGGGTGCACTGCCTCGGGTGGGATATGCGGAGGTT
CACCATGCCGTCCTTTGCGTGCTTCCTGCAGAACTCGCGCTTCTTCGAGG
CCGGGGTGCCGTACGTTTGAAGCGAGGGGCACCCCGGGTGAAGGCACTTC
TTGTTCCGGACGTCGAACATGCCCTCCAGGGCGTGCACGCCACACGCCAT
GGGCCGCTGCCCCGGGAAGGCGAAAGCTCGGTTCTTGCTGCAGCCGGAGT
GGGTACACTTCTTGACTACGACGTTCACCATCCCGTGCTCGACGTGCTTG
GAGCAAAACCGGGCTCTCTTGGTGCCGTCCACGCCAAACGAGGGCTTTCG
GGGGCAGTTTTCGTGCTCGCAGAGCTTGGGGTTGAGGTGGACCATCCCCT
CGGGCGCGTGCCGCTTGCAGAAGTCTCGTTTGCCGCTGCCCGGCAGCCCG
TACGAGGGGTGTGTGCTGCAGCCCGGCTGGTGGAGGCACCTCTTGGTGAG
GACGTCCACCATTCCCTCCGGAGCGTGCTGGGCGCAGAACTGAGCTCTCC
TGCTGCCGCCCACGCCGAACGTGGGCTTCTTGTCGCAGCCTTCTTGCTCG
CACCGCTTGACGTAGAGGCGGATCGTCCCTTCCTTGCGGTGGATGTTGCA
GAAGGAAGGCCCCTTGTAGCCGCCTCCGACGCCGTAGGACGACCTCTTGT
CGCAGCCTTCCTGGGAGCACCTCATCACCATGTTGTCCTTCCTCTTCTCC
CCTTTCCGTTCCTTCCCTCCCTGCTTCGAGTAACTAGCGAGCGCGCGAGA
GGCGATAGGCCACTGCAAGTGACAGGCGATGTG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10255:2585..4617+

>mRNA_S-firma_F_contig10255.389.1 ID=mRNA_S-firma_F_contig10255.389.1|Name=mRNA_S-firma_F_contig10255.389.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3792bp|location=Sequence derived from alignment at S-firma_F_contig10255:2585..4617+ (Sphaerotrichia firma ET2_F female)
ATGCCGCGATCACCACCAACAATCCACAACGTGTATTCATGTTTGCGCTG
CCCACACGTGAAAAACACAAACGCTATCAAACCGGCACGCGACGACGGCA
TGGTTTCAAGGGGCCATACCGACCATGTAGACACCAGGAGAGCTTGCAAA
AAAGTCCAAAAAGTCCCACAGCGGGCGTTGTGCTGCGGGCCGGCACTACC
GACCTCACGCCGCCTGCGTAGAATAGACGCTACTGTATCAGCCAAGACAA
GCACGCCGGCACGGGGACATCTGCACACCGGTGCTGCTACACCGGTGCTG
CTGGACACGGCACGCTGTTGCAGCCTTAACTTAGCCTTGGAAAGCTCCTC
TCCTCTTACTTCCTCCACACGGACTCAGCTCCAGCCTTTTTGTGTGCAGC
ACCAAGCTGTTGCAGCCGTAGCCTTGGAAAGCTTCTCTCCTCGTACTTCC
TCAACGCGGACTCAGCTCCAGCCTTTTTGTGCGCCATCCTCAACAGCAGT
TGTGAAAAAGATTACGGCATCAATATCGTACGTACTTCCAGACCGGAACA
CCAAAGGAGCCTCGCTCAACAAAGTCACCAAAAGCCGCCTGAACGAAGCA
CCCTCCTCTGCAGGTCTATCTCTGGTGCCAGCCAGCAATGGCGTCTTCAA
ACATAAGGTGGCAAGCGTCTCTTGTCTTGCGTTCCGCAGGGAAACCATGT
GGCTAACGGCGCGCCGCATCCCACTCCTGCCGCTCGCCCCACCCCCGCAG
AGAAGTGCGAGTCATCCCCGCCTTCGCGTGCTCGGCGCAGAACTCGCGCT
TCGTGCTCCCCCACTGCCCGAACGTCGCGCCGTTCGGGCAGCCCGGGTGG
CCGCACCGCTTGCGGGCGTAGCTCGGGACCATACCCTCCTTAGCGTGCAC
GCGGCAGTACTCGCGCCTGCTGCTTCCCGGTTGGCCGAACGATGCAGCCG
TGCCACAGCCCTCGAACTGGCACCTCTTGATGACGACATTGACCATGCCG
GCCTCGGCGTGCTTGGCGCAGAACAGGGCAGTCTTGGTGCCTTTCACCCC
GTACGACGGCTGCTTGCTGCACTCGTTGCGGGTGCACTGCCTCGGGTGGG
ATATGCGGAGGTTCACCATGCCGTCCTTTGCGTGCTTCCTGCAGAACTCG
CGCTTCTTCGAGGCCGGGGTGCCGTACGTTTGAAGCGAGGGGCACCCCGG
GTGAAGGCACTTCTTGTTCCGGACGTCGAACATGCCCTCCAGGGCGTGCA
CGCCACACGCCATGGGCCGCTGCCCCGGGAAGGCGAAAGCTCGGTTCTTG
CTGCAGCCGGAGTGGGTACACTTCTTGACTACGACGTTCACCATCCCGTG
CTCGACGTGCTTGGAGCAAAACCGGGCTCTCTTGGTGCCGTCCACGCCAA
ACGAGGGCTTTCGGGGGCAGTTTTCGTGCTCGCAGAGCTTGGGGTTGAGG
TGGACCATCCCCTCGGGCGCGTGCCGCTTGCAGAAGTCTCGTTTGCCGCT
GCCCGGCAGCCCGTACGAGGGGTGTGTGCTGCAGCCCGGCTGGTGGAGGC
ACCTCTTGGTGAGGACGTCCACCATTCCCTCCGGAGCGTGCTGGGCGCAG
AACTGAGCTCTCCTGCTGCCGCCCACGCCGAACGTGGGCTTCTTGTCGCA
GCCTTCTTGCTCGCACCGCTTGACGTAGAGGCGGATCGTCCCTTCCTTGC
GGTGGATGTTGCAGAAGGAAGGCCCCTTGTAGCCGCCTCCGACGCCGTAG
GACGACCTCTTGTCGCAGCCTTCCTGGGAGCACCTCATCACCATGTTGTC
CTTCCTCTTCTCCCCTTTCCGTTCCTTCCCTCCCTGCTTCGAGTAACTAG
CGAGCGCGCGAGAGGCGATAGGCCACTGCAAGTGACAGGCGATGTGATGC
CGCGATCACCACCAACAATCCACAACGTGTATTCATGTTTGCGCTGCCCA
CACGTGAAAAACACAAACGCTATCAAACCGGCACGCGACGACGGCATGGT
TTCAAGGGGCCATACCGACCATGTAGACACCAGGAGAGCTTGCAAAAAAG
TCCAAAAAGTCCCACAGCGGGCGTTGTGCTGCGGGCCGGCACTACCGACC
TCACGCCGCCTGCGTAGAATAGACGCTACTGTATCAGCCAAGACAAGCAC
GCCGGCACGGGGACATCTGCACACCGGTGCTGCTACACCGGTGCTGCTGG
ACACGGCACGCTGTTGCAGCCTTAACTTAGCCTTGGAAAGCTCCTCTCCT
CTTACTTCCTCCACACGGACTCAGCTCCAGCCTTTTTGTGTGCAGCACCA
AGCTGTTGCAGCCGTAGCCTTGGAAAGCTTCTCTCCTCGTACTTCCTCAA
CGCGGACTCAGCTCCAGCCTTTTTGTGCGCCATCCTCAACAGCAGTTGTG
AAAAAGATTACGGCATCAATATCGTACGTACTTCCAGACCGGAACACCAA
AGGAGCCTCGCTCAACAAAGTCACCAAAAGCCGCCTGAACGAAGCACCCT
CCTCTGCAGGTCTATCTCTGGTGCCAGCCAGCAATGGCGTCTTCAAACAT
AAGGTGGCAAGCGTCTCTTGTCTTGCGTTCCGCAGGGAAACCATGTGGCT
AACGGCGCGCCGCATCCCACTCCTGCCGCTCGCCCCACCCCCGCAGAGAA
GTGCGAGTCATCCCCGCCTTCGCGTGCTCGGCGCAGAACTCGCGCTTCGT
GCTCCCCCACTGCCCGAACGTCGCGCCGTTCGGGCAGCCCGGGTGGCCGC
ACCGCTTGCGGGCGTAGCTCGGGACCATACCCTCCTTAGCGTGCACGCGG
CAGTACTCGCGCCTGCTGCTTCCCGGTTGGCCGAACGATGCAGCCGTGCC
ACAGCCCTCGAACTGGCACCTCTTGATGACGACATTGACCATGCCGGCCT
CGGCGTGCTTGGCGCAGAACAGGGCAGTCTTGGTGCCTTTCACCCCGTAC
GACGGCTGCTTGCTGCACTCGTTGCGGGTGCACTGCCTCGGGTGGGATAT
GCGGAGGTTCACCATGCCGTCCTTTGCGTGCTTCCTGCAGAACTCGCGCT
TCTTCGAGGCCGGGGTGCCGTACGTTTGAAGCGAGGGGCACCCCGGGTGA
AGGCACTTCTTGTTCCGGACGTCGAACATGCCCTCCAGGGCGTGCACGCC
ACACGCCATGGGCCGCTGCCCCGGGAAGGCGAAAGCTCGGTTCTTGCTGC
AGCCGGAGTGGGTACACTTCTTGACTACGACGTTCACCATCCCGTGCTCG
ACGTGCTTGGAGCAAAACCGGGCTCTCTTGGTGCCGTCCACGCCAAACGA
GGGCTTTCGGGGGCAGTTTTCGTGCTCGCAGAGCTTGGGGTTGAGGTGGA
CCATCCCCTCGGGCGCGTGCCGCTTGCAGAAGTCTCGTTTGCCGCTGCCC
GGCAGCCCGTACGAGGGGTGTGTGCTGCAGCCCGGCTGGTGGAGGCACCT
CTTGGTGAGGACGTCCACCATTCCCTCCGGAGCGTGCTGGGCGCAGAACT
GAGCTCTCCTGCTGCCGCCCACGCCGAACGTGGGCTTCTTGTCGCAGCCT
TCTTGCTCGCACCGCTTGACGTAGAGGCGGATCGTCCCTTCCTTGCGGTG
GATGTTGCAGAAGGAAGGCCCCTTGTAGCCGCCTCCGACGCCGTAGGACG
ACCTCTTGTCGCAGCCTTCCTGGGAGCACCTCATCACCATGTTGTCCTTC
CTCTTCTCCCCTTTCCGTTCCTTCCCTCCCTGCTTCGAGTAACTAGCGAG
CGCGCGAGAGGCGATAGGCCACTGCAAGTGACAGGCGATGTG
back to top