mRNA_S-firma_F_contig10250.385.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE) HSP 1 Score: 423 bits (1088), Expect = 1.910e-145 Identity = 220/245 (89.80%), Postives = 223/245 (91.02%), Query Frame = 2
Query: 65 LVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQ--VAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVA-GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISDPEPAPDS 790
+VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQT QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP APP A VPGAPSAAR+FYGQ GGLGG APPGAPPVA GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVG NCFRVYQIQRAWSDAHASL RALDDESQLR+SPYRLLRCIISDPEPAPDS
Sbjct: 1 MVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP---APPTQVAAAVPGAPSAARMFYGQ--------GGLGGVAPPGAPPVAAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHASLARALDDESQLRASPYRLLRCIISDPEPAPDS 234
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.090e-72 Identity = 135/221 (61.09%), Postives = 158/221 (71.49%), Query Frame = 2
Query: 53 LPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPS-AARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD 712
P V VDVSFEGQ HNGQA+N+LV L++ +PALRPLA++LKQF+ E+GLC SYTGGLSSYAL L+VARYLQEQ+ +D+GSLL GFLDF+GN FDPR TGISV R YFSR A P PP APV +P ++FY PS G GA G G +PYRFDPLFIEDP+ L NNVGRNCFR+YQI+RAWSDAHA+LTRA+D
Sbjct: 126 FPPVHVDVSFEGQWHNGQASNRLVLGLIEEYPALRPLAIVLKQFLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTPTT-WPPLAAPVQPSPGMGGQVFYPPPPPLPSHPGPHMGAGAAAGGFTGGREG------VPYRFDPLFIEDPLALGNNVGRNCFRIYQIKRAWSDAHAALTRAMD 339
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 237 bits (605), Expect = 5.260e-65 Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 2
Query: 77 SFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQ 475
+FEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQT QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP P P A VPGAPSAAR+FYGQ
Sbjct: 1792 TFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP-APPPQVAAAVPGAPSAARMFYGQ 1923
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA) HSP 1 Score: 184 bits (468), Expect = 5.400e-47 Identity = 109/221 (49.32%), Postives = 135/221 (61.09%), Query Frame = 2
Query: 62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPP---SFQGGLGGAAPPGAP------PVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASL 697
V +DVS EG HNG AN+++ L+ ALRPL L+LKQFM E+GL SY+GGLSSY L LMVARYLQEQ+ MD+G+LLLGFLDFY NHFDPR GIS + YFSRS+ Q + + + PP + + LGGA P P G + PY+FDPL+IEDP+ SNN+GRNCFR++QIQRAW+DA L
Sbjct: 1145 VHLDVSIEGGQHNGLLANRVIAKLLGENFALRPLVLVLKQFMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSS---------QQSHL----XXXXXXXXXQNMPPLGSNRRVSLGGAGDVHLPYYYVHQQQQVRPAGGSFLENPYKFDPLYIEDPIRPSNNIGRNCFRIFQIQRAWNDAWRDL 1352
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO) HSP 1 Score: 175 bits (444), Expect = 7.840e-44 Identity = 112/265 (42.26%), Postives = 148/265 (55.85%), Query Frame = 2
Query: 68 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAP-------------VPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAP--PVAGIPGWG-----------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRAL--DDESQLR---SSPYRLLRCIISD 769
+D++F+ GH+G A Q+V ++D P +RPL L+LKQF+ +GL +YTGGLS+Y L LMVARYLQEQ D GSLL+GFLDFYGN+FDPR GISV +YFSR + + A PQ P VP R + +G + +G A PVA + D MPY DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L +L D S + S Y LL+C++ +
Sbjct: 1233 LDITFDSPGHHGIEAIQMVTQIMDELPVIRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSRLSAA--MGAAPQSVPTNETAWRPIGPNHVPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATSIPVATNNNYFRKPLTQHNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKCLLQN 1495
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S3JPY7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY7_9STRA) HSP 1 Score: 174 bits (441), Expect = 1.840e-43 Identity = 101/222 (45.50%), Postives = 127/222 (57.21%), Query Frame = 2
Query: 62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQ-MDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQ 724
V +DVSFE H G AN+LV ++D PA RPL L+LKQ + +GLC SYTGGLSSYALTL+VARYL EQ + D G+LLLGFLDFY + FDPR TGISVGR +F+R+ +A R RG + FDPL++EDP++ NNVGRNCFR+ QIQRAWS+A +LT A+ +S+
Sbjct: 1090 VKLDVSFEAPWHRGLDANRLVLKMLDDTPAARPLLLVLKQHTVNRGLCASYTGGLSSYALTLLVARYLHEQPSRPTDPGALLLGFLDFYAHRFDPRKTGISVGRRCFFARAE----------------LGTAPRHAVNHRGS--------------------------------FHFDPLYVEDPLSPGNNVGRNCFRIAQIQRAWSEAFFALTEAIRRQSR 1263
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO) HSP 1 Score: 174 bits (440), Expect = 2.620e-43 Identity = 104/239 (43.51%), Postives = 135/239 (56.49%), Query Frame = 2
Query: 68 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR-SAPLPPVPAPPQVAPVPGAPSAA----------RLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWG-------------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD 712
+D++F+ GH+G A Q+V ++D P +RPL L+LKQF+ +GL +YTGGLS+Y L LMVARYLQEQ D GSLL+GFLDFYGN+FDPR TGISV +YFSR SA + P P P A R + +G + +G A P+ D MPY DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L +L+
Sbjct: 1232 LDITFDSPGHHGIEAIQMVTQIMDELPVMRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSRLSAVMGPAPQSVPTNETAWRPIGANHLPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATPIPVTAKNNHHRKPPTQPNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLE 1470
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S1U3N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N8_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.100e-41 Identity = 107/254 (42.13%), Postives = 131/254 (51.57%), Query Frame = 2
Query: 62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYR--------LLRCIISDPEPAPDS 790
V +DVSFE Q H G AN + L+ P LRPL L+LKQF EKGL SYTGG+SSYALTL+VARYLQE G D GSLLLGFLDFYG+ FDPR TG+SV R YFSR + A PQ S + L +DP+ IEDP++ +NNVGRNCFR++Q+ +AW +L LD D L +R +L CI+ +P P S
Sbjct: 207 VRLDVSFESQQHYGVRANGFILHLLAALPPLRPLTLILKQFCKEKGLSASYTGGISSYALTLLVARYLQETLGHSGGDLGSLLLGFLDFYGSKFDPRTTGVSVRRGVYFSR------LHANPQ--------SVSHLNV---------------------------------------YDPIIIEDPLSEANNVGRNCFRIHQVLKAWRAGAKALNARLDQDADDLGGGDHRVGPLENMSILSCIVKG-DPFPQS 406
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S2Q1J0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1J0_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.400e-41 Identity = 104/250 (41.60%), Postives = 142/250 (56.80%), Query Frame = 2
Query: 62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA--------PPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSS-----PYRLLRCIISD 769
V +D+SF+ + H+G A +++ L++ P +RPL L+LKQF++++GL +YTGGLSSY L LMVARY QEQ+ D GSLL+G LDFYGN F+PR TGISV RYFSR A PP+ P+ R SFQ A P P +FDP+++EDP+N NNVGRN FR++Q+QRA+SDAH +L AL+ + S Y LL+C++ +
Sbjct: 1271 VQLDLSFDAKEHHGLEALDMIRHLLEEIPMIRPLVLVLKQFLLDRGLLTAYTGGLSSYCLFLMVARYCQEQSPTWNDRGSLLMGLLDFYGNFFEPRTTGISVRTRRYFSRFGENQHQEARRNNAATKPPRFQPL--------------NRQSSFQ-------------TAQQPN----QLQPGKFDPIWVEDPLNPGNNVGRNAFRIFQVQRAFSDAHRALVAALEWDINSMSEFGEDGEYPLLKCLLQN 1489
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1E7FBX4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBX4_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.460e-41 Identity = 117/282 (41.49%), Postives = 155/282 (54.96%), Query Frame = 2
Query: 62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA---PPQV--------------APVPGAP---------SAARLFYGQRGRPPS-FQGGLGGAAPPGA------------PPVAGIPGWG------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYRLLRCIISD 769
+ +D+SF+G H+G ANQ+V +++ P +RPL L+LKQF++ +GL +YTGGLSS+ L LMVARYLQEQ D GSLL+GFLDFYGN FDPR GISV +YF+R+ V A PP + P+P S A G R R P F G G+ P V P D +R P+ FD LF+EDP++ SNNVGRN FR+ Q+QRA+SDAH +L +L+ ES + Y LL+CI+ +
Sbjct: 1337 IQLDISFDGPEHHGLEANQMVTLILEELPLIRPLMLVLKQFLLRRGLLTAYTGGLSSHCLFLMVARYLQEQPLSGDCGSLLMGFLDFYGNCFDPRAIGISVRGRQYFARTNNHTAVVAGYEPPAIWNGPHPHTQHAVTNIPIPTGDIDFRRRNSFSDAGSVDGSRRRHPRLFAKPTGSTVASGSSHRFVPRSAPTHPKVVDHPNNNNTNPSFDNVR-PFTFDLLFVEDPLSSSNNVGRNAFRINQVQRAFSDAHRALVASLEWGESAEGAGKYPLLKCILGE 1617 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10250.385.1 >prot_S-firma_F_contig10250.385.1 ID=prot_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=249bp MGLPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKback to top mRNA from alignment at S-firma_F_contig10250:1664..5078+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10250.385.1 ID=mRNA_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3415bp|location=Sequence derived from alignment at S-firma_F_contig10250:1664..5078+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10250:1664..5078+ >mRNA_S-firma_F_contig10250.385.1 ID=mRNA_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1494bp|location=Sequence derived from alignment at S-firma_F_contig10250:1664..5078+ (Sphaerotrichia firma ET2_F female)back to top |