mRNA_S-firma_F_contig10250.385.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10250.385.1
Unique NamemRNA_S-firma_F_contig10250.385.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 1.910e-145
Identity = 220/245 (89.80%), Postives = 223/245 (91.02%), Query Frame = 2
Query:   65 LVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQ--VAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVA-GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISDPEPAPDS 790
            +VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQT QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP   APP    A VPGAPSAAR+FYGQ        GGLGG APPGAPPVA GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVG NCFRVYQIQRAWSDAHASL RALDDESQLR+SPYRLLRCIISDPEPAPDS
Sbjct:    1 MVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP---APPTQVAAAVPGAPSAARMFYGQ--------GGLGGVAPPGAPPVAAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHASLARALDDESQLRASPYRLLRCIISDPEPAPDS 234          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.090e-72
Identity = 135/221 (61.09%), Postives = 158/221 (71.49%), Query Frame = 2
Query:   53 LPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPS-AARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD 712
             P V VDVSFEGQ HNGQA+N+LV  L++ +PALRPLA++LKQF+ E+GLC SYTGGLSSYAL L+VARYLQEQ+  +D+GSLL GFLDF+GN FDPR TGISV R  YFSR A  P    PP  APV  +P    ++FY      PS  G   GA         G  G      +PYRFDPLFIEDP+ L NNVGRNCFR+YQI+RAWSDAHA+LTRA+D
Sbjct:  126 FPPVHVDVSFEGQWHNGQASNRLVLGLIEEYPALRPLAIVLKQFLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTPTT-WPPLAAPVQPSPGMGGQVFYPPPPPLPSHPGPHMGAGAAAGGFTGGREG------VPYRFDPLFIEDPLALGNNVGRNCFRIYQIKRAWSDAHAALTRAMD 339          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 5.260e-65
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 2
Query:   77 SFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQ 475
            +FEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQT QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP  P P   A VPGAPSAAR+FYGQ
Sbjct: 1792 TFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP-APPPQVAAAVPGAPSAARMFYGQ 1923          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.400e-47
Identity = 109/221 (49.32%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPP---SFQGGLGGAAPPGAP------PVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASL 697
            V +DVS EG  HNG  AN+++  L+    ALRPL L+LKQFM E+GL  SY+GGLSSY L LMVARYLQEQ+  MD+G+LLLGFLDFY NHFDPR  GIS  +  YFSRS+         Q + +             +  PP   + +  LGGA     P           P  G  +  PY+FDPL+IEDP+  SNN+GRNCFR++QIQRAW+DA   L
Sbjct: 1145 VHLDVSIEGGQHNGLLANRVIAKLLGENFALRPLVLVLKQFMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSS---------QQSHL----XXXXXXXXXQNMPPLGSNRRVSLGGAGDVHLPYYYVHQQQQVRPAGGSFLENPYKFDPLYIEDPIRPSNNIGRNCFRIFQIQRAWNDAWRDL 1352          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO)

HSP 1 Score: 175 bits (444), Expect = 7.840e-44
Identity = 112/265 (42.26%), Postives = 148/265 (55.85%), Query Frame = 2
Query:   68 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAP-------------VPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAP--PVAGIPGWG-----------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRAL--DDESQLR---SSPYRLLRCIISD 769
            +D++F+  GH+G  A Q+V  ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ    D GSLL+GFLDFYGN+FDPR  GISV   +YFSR +    + A PQ  P             VP      R  +  +G   + +G         A   PVA    +            D   MPY  DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L  +L  D  S +     S Y LL+C++ +
Sbjct: 1233 LDITFDSPGHHGIEAIQMVTQIMDELPVIRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSRLSAA--MGAAPQSVPTNETAWRPIGPNHVPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATSIPVATNNNYFRKPLTQHNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKCLLQN 1495          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S3JPY7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.840e-43
Identity = 101/222 (45.50%), Postives = 127/222 (57.21%), Query Frame = 2
Query:   62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQ-MDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQ 724
            V +DVSFE   H G  AN+LV  ++D  PA RPL L+LKQ  + +GLC SYTGGLSSYALTL+VARYL EQ  +  D G+LLLGFLDFY + FDPR TGISVGR  +F+R+                   +A R     RG                                 + FDPL++EDP++  NNVGRNCFR+ QIQRAWS+A  +LT A+  +S+
Sbjct: 1090 VKLDVSFEAPWHRGLDANRLVLKMLDDTPAARPLLLVLKQHTVNRGLCASYTGGLSSYALTLLVARYLHEQPSRPTDPGALLLGFLDFYAHRFDPRKTGISVGRRCFFARAE----------------LGTAPRHAVNHRGS--------------------------------FHFDPLYVEDPLSPGNNVGRNCFRIAQIQRAWSEAFFALTEAIRRQSR 1263          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO)

HSP 1 Score: 174 bits (440), Expect = 2.620e-43
Identity = 104/239 (43.51%), Postives = 135/239 (56.49%), Query Frame = 2
Query:   68 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR-SAPLPPVPAPPQVAPVPGAPSAA----------RLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWG-------------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD 712
            +D++F+  GH+G  A Q+V  ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ    D GSLL+GFLDFYGN+FDPR TGISV   +YFSR SA + P P           P  A          R  +  +G   + +G         A P+                    D   MPY  DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L  +L+
Sbjct: 1232 LDITFDSPGHHGIEAIQMVTQIMDELPVMRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSRLSAVMGPAPQSVPTNETAWRPIGANHLPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATPIPVTAKNNHHRKPPTQPNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLE 1470          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S1U3N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.100e-41
Identity = 107/254 (42.13%), Postives = 131/254 (51.57%), Query Frame = 2
Query:   62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYR--------LLRCIISDPEPAPDS 790
            V +DVSFE Q H G  AN  +  L+   P LRPL L+LKQF  EKGL  SYTGG+SSYALTL+VARYLQE  G    D GSLLLGFLDFYG+ FDPR TG+SV R  YFSR      + A PQ        S + L                                         +DP+ IEDP++ +NNVGRNCFR++Q+ +AW     +L   LD D   L    +R        +L CI+   +P P S
Sbjct:  207 VRLDVSFESQQHYGVRANGFILHLLAALPPLRPLTLILKQFCKEKGLSASYTGGISSYALTLLVARYLQETLGHSGGDLGSLLLGFLDFYGSKFDPRTTGVSVRRGVYFSR------LHANPQ--------SVSHLNV---------------------------------------YDPIIIEDPLSEANNVGRNCFRIHQVLKAWRAGAKALNARLDQDADDLGGGDHRVGPLENMSILSCIVKG-DPFPQS 406          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A7S2Q1J0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1J0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.400e-41
Identity = 104/250 (41.60%), Postives = 142/250 (56.80%), Query Frame = 2
Query:   62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA--------PPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSS-----PYRLLRCIISD 769
            V +D+SF+ + H+G  A  +++ L++  P +RPL L+LKQF++++GL  +YTGGLSSY L LMVARY QEQ+    D GSLL+G LDFYGN F+PR TGISV   RYFSR        A        PP+  P+               R  SFQ              A  P        P +FDP+++EDP+N  NNVGRN FR++Q+QRA+SDAH +L  AL+ +    S       Y LL+C++ +
Sbjct: 1271 VQLDLSFDAKEHHGLEALDMIRHLLEEIPMIRPLVLVLKQFLLDRGLLTAYTGGLSSYCLFLMVARYCQEQSPTWNDRGSLLMGLLDFYGNFFEPRTTGISVRTRRYFSRFGENQHQEARRNNAATKPPRFQPL--------------NRQSSFQ-------------TAQQPN----QLQPGKFDPIWVEDPLNPGNNVGRNAFRIFQVQRAFSDAHRALVAALEWDINSMSEFGEDGEYPLLKCLLQN 1489          
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Match: A0A1E7FBX4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBX4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.460e-41
Identity = 117/282 (41.49%), Postives = 155/282 (54.96%), Query Frame = 2
Query:   62 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA---PPQV--------------APVPGAP---------SAARLFYGQRGRPPS-FQGGLGGAAPPGA------------PPVAGIPGWG------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYRLLRCIISD 769
            + +D+SF+G  H+G  ANQ+V  +++  P +RPL L+LKQF++ +GL  +YTGGLSS+ L LMVARYLQEQ    D GSLL+GFLDFYGN FDPR  GISV   +YF+R+     V A   PP +               P+P            S A    G R R P  F    G     G+            P V   P         D +R P+ FD LF+EDP++ SNNVGRN FR+ Q+QRA+SDAH +L  +L+  ES   +  Y LL+CI+ +
Sbjct: 1337 IQLDISFDGPEHHGLEANQMVTLILEELPLIRPLMLVLKQFLLRRGLLTAYTGGLSSHCLFLMVARYLQEQPLSGDCGSLLMGFLDFYGNCFDPRAIGISVRGRQYFARTNNHTAVVAGYEPPAIWNGPHPHTQHAVTNIPIPTGDIDFRRRNSFSDAGSVDGSRRRHPRLFAKPTGSTVASGSSHRFVPRSAPTHPKVVDHPNNNNTNPSFDNVR-PFTFDLLFVEDPLSSSNNVGRNAFRINQVQRAFSDAHRALVASLEWGESAEGAGKYPLLKCILGE 1617          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10250.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE1.910e-14589.80PAP-associated domain-containing protein n=1 Tax=E... [more]
A0A835ZHQ3_9STRA1.090e-7261.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHG7_ECTSI5.260e-6591.73LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7U5Q9_9STRA5.400e-4749.32Nucleotidyl transferase domain protein n=4 Tax=Mon... [more]
A0A1Z5KCZ8_FISSO7.840e-4442.26Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3JPY7_9STRA1.840e-4345.50Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A1Z5KF72_FISSO2.620e-4343.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1U3N8_9STRA1.100e-4142.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Q1J0_9STRA2.400e-4141.60Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FBX4_9STRA2.460e-4141.49Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10250contigS-firma_F_contig10250:1664..5078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FHG7
PFAMsNTP_transf_2,PAP_assoc
Max annot lvl2759|Eukaryota
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue9.15e-69
EggNOG OGsCOG5260@1|root,KOG1906@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size1372
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10250.385.1prot_S-firma_F_contig10250.385.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10250 1710..4281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.2914286-UTR-S-firma_F_contig10250:1663..17091622815555.2914286-UTR-S-firma_F_contig10250:1663..1709Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 1664..1709 +
1696949412.4435103-UTR-S-firma_F_contig10250:1663..17091696949412.4435103-UTR-S-firma_F_contig10250:1663..1709Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 1664..1709 +
1622815555.3608155-UTR-S-firma_F_contig10250:4281..44681622815555.3608155-UTR-S-firma_F_contig10250:4281..4468Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 4282..4468 +
1696949412.5379577-UTR-S-firma_F_contig10250:4281..44681696949412.5379577-UTR-S-firma_F_contig10250:4281..4468Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 4282..4468 +
1622815555.3752408-UTR-S-firma_F_contig10250:4686..50781622815555.3752408-UTR-S-firma_F_contig10250:4686..5078Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 4687..5078 +
1696949412.5474114-UTR-S-firma_F_contig10250:4686..50781696949412.5474114-UTR-S-firma_F_contig10250:4686..5078Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10250 4687..5078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.3068244-CDS-S-firma_F_contig10250:1709..18441622815555.3068244-CDS-S-firma_F_contig10250:1709..1844Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 1710..1844 +
1696949412.4573226-CDS-S-firma_F_contig10250:1709..18441696949412.4573226-CDS-S-firma_F_contig10250:1709..1844Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 1710..1844 +
1622815555.319412-CDS-S-firma_F_contig10250:2158..22351622815555.319412-CDS-S-firma_F_contig10250:2158..2235Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 2159..2235 +
1696949412.466366-CDS-S-firma_F_contig10250:2158..22351696949412.466366-CDS-S-firma_F_contig10250:2158..2235Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 2159..2235 +
1622815555.329708-CDS-S-firma_F_contig10250:2531..27481622815555.329708-CDS-S-firma_F_contig10250:2531..2748Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 2532..2748 +
1696949412.5044937-CDS-S-firma_F_contig10250:2531..27481696949412.5044937-CDS-S-firma_F_contig10250:2531..2748Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 2532..2748 +
1622815555.3396313-CDS-S-firma_F_contig10250:3223..33331622815555.3396313-CDS-S-firma_F_contig10250:3223..3333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 3224..3333 +
1696949412.516897-CDS-S-firma_F_contig10250:3223..33331696949412.516897-CDS-S-firma_F_contig10250:3223..3333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 3224..3333 +
1622815555.34932-CDS-S-firma_F_contig10250:4073..42811622815555.34932-CDS-S-firma_F_contig10250:4073..4281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 4074..4281 +
1696949412.5261822-CDS-S-firma_F_contig10250:4073..42811696949412.5261822-CDS-S-firma_F_contig10250:4073..4281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10250 4074..4281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10250.385.1

>prot_S-firma_F_contig10250.385.1 ID=prot_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=249bp
MGLPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEK
GLCVSYTGGLSSYALTLMVARYLQEQTGQMDSGSLLLGFLDFYGNHFDPR
LTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSF
QGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNC
FRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISDPEPAPDS*
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mRNA from alignment at S-firma_F_contig10250:1664..5078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10250.385.1 ID=mRNA_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3415bp|location=Sequence derived from alignment at S-firma_F_contig10250:1664..5078+ (Sphaerotrichia firma ET2_F female)
TGGTGGTGGTGGTGGTGGGGCGGGGGGGGGGGGCGGGGCTGATCCGATGG GACTGCCGCGTGTGCTAGTGGACGTGAGCTTCGAGGGGCAGGGCCACAAC GGGCAGGCGGCGAACCAGCTGGTGAAGGACTTGGTGGATGGGTTTCCGGC TCTGAGGCCGCTGGCGCTGTTGCTGAAGCAGGTGTGTGGGTGTGCTTTGT TTCGTGACGTGACGGGCTGCGCTAGTGGAATGTGTTACCGGACAAACTTT TCTGTGTGATTACCACGTGTTTGGTGCGCACGCTGAAAACTCCTTTTCAG TCGGCGCCTCGCGCAATGAGCTATGCGAAACGTCGAAGATACGAAGATAC CAAACGTGTGAGTTGCTGGGCGATTGGCTTCGGCGTTGCGTTTTCCTCGT TGGCTGATTGATCTCTTCCTGTGTTGGCCAATCCCTCTCTGTTGTTTTTG CCGCCCTTCTTGCCCGCTCGTGTCGAATCGCTCTCGTTTTGGAAGTTCAT GATGGAGAAAGGTCTGTGCGTCAGCTACACCGGAGGGCTGTCGTCGTACG CTCTCACGCTCATGGTGGCTAGGTGCGTGCGAGCGTGGTCGGAAAATTAA CATCGGGTTGCCCACCAAAGCTGAATCGTAGCGCCACGGTTCAACCGCAT GATGTTTTGCGCCTGGCCTTGGCCTCTGTCTTGATGCTCTGTGTCGGAAT GTTCGGCTCTTTGTCGCGCTTTCAGCTGGATACCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCATGTTGTGGCCTGGGGGAAACGTGCATAAG CATGCAGGGCCTAACCCTTTCCCCTCTTCTCTGTGCGCTTCAAACTTCCC AAACACCCAACAAAACAGGTACCTCCAGGAACAAACCGGCCAGATGGACT CGGGGTCGCTGCTGCTGGGCTTCCTCGACTTCTACGGCAACCACTTCGAC CCCCGCCTCACCGGCATCAGCGTCGGACGCAGCCGCTACTTCTCCCGGAG CGCGCCTTTGCCTCCCGTGCCCGCACCGCCCCAGGTGGCGCCGGTTCCGG GGGCACCGAGTGCGGCGCGATTGTTCTACGGCCAGGTGCGCATTTACGCT TCTTCCTTGGGTACCACAGGTGTCTCTTCGTTTCTTGAGGTCTGTGCGAC ATGTGACCGAACATAGAGAAGTCGACTGTGGCTTCTTTTCAAGAGGTGTT CGCAAGGCTTTCCGAGTGTGGCACGGCGGTTGTTGAATCGATTCCGTAGG TGCGCGAATTGTGTGAAATTCCTTTCATGTTTATTTTAAAGACGGAATGA ATGGGCAAGGAGAGCGTGCTTCTAACTTTTGTGGCCTCTCCCAATCCGAA CGAGCGGCCCTGCCCACCATGTTGGTACTTGCTTATGTGAACGTGCATAC GCGTCCCCTCTTCTCCCACAAGAGAATGCATTGCTCGCTGGTATTACCCC CGCCCCCCGGGGCCAACTCCACTCAACACTCCCTCGATTCTCTCCTTTCC CCGGTGTGTCGGGGGTAATTTCACCTCCTTGCCGCTGGGTTCCTAACCTG CCGAGAGCAGAGAGGCCGACCTCCGTCCTTCCAGGGCGGGCTGGGAGGGG CGGCACCTCCGGGAGCCCCGCCGGTCGCCGGAATCCCTGGTTGGGGTGAC ATGATGCGCATGCCTTATCGGTGAGGAAAACCCCTGTTCGAGCTTGGGGT TAACGCGGTGTTCTGCTGGGTTCCACAAAAGTCAGCGATGTGTACGTTTG GTGGTTTTAGCACCGAGCTTGTGCAAGTTTGTGGAGCTACTGTCGATCTG CGTAGGGATTCGCTTACCTTTTGAAGGCTGGATGGGTGGGTTGTGGGCTG CGTTCGACAATGCATTGCCGTGACGTTTTCCCTTCACAGCAGTCGTAGTG GCGTCCTACGTAGTAAAGCCATCGCTTCTGTCGTAGTCGGTATCTGGTTT GCTTTTGTTTCCGGTCATGGCGAGGAAAAACATTTTGTCGACAACCAACC CCAGCATCGGAGCCCGCTTTCTCTCAAGATCTTGACTACTGCGGTAGGTT TTCGGGGGCATGTTTGTGGAGTGCATTACAGCGATGCGTCGTTTTCGTCT GGGTGCCGTCGAAATGGATTGTATGTAACCGTGGATCAAAATACAGGAAA TAATATCCAGCGACACATTCCAAGCAGACACAAGGTCGCCCCGTCTTTTT TTTTTTTTTACTCCAAGACGTCGGCCGTCTATTTTACGCCCAGCCTGTTC CGTCATATTTTTTATTTAAGGTCTTTACTACTACTGTACCTTGTTAAGGT GCTGTCCCTCCTGTCATGATATACTCGAAGAACGCCCACAGCCGCATCGA CGTGAATTATTTGCAACTCTCCCATATGTATTCCGTTTCTTCTTTGCCTT GCCGTGGCAGGTTCGACCCTCTCTTCATCGAGGACCCCATGAACCTGAGC AACAATGTCGGCCGCAACTGCTTCCGGGTGTACCAGATCCAGAGGGCGTG GAGTGACGCCCACGCCTCGCTCACGCGCGCGTTGGACGACGAGTCGCAGC TCCGGTCCAGCCCTTACCGCCTGCTGAGATGCATCATTTCTGACCCTGAA CCCGCCCCCGACAGCTGAGCGGGGCCGGCTGTTTTGGCCGGCTTGACTCA CGGTTGGCGTTGTTGATTTCGTGGCGATTGTTCACGCAGCAGTTGGTTGG GCGTTTAAAACGGACTTCCGCCGCAGCGGTTTGGTCGCAGAATTGGGGGC GGGCTGCTGTGACAGCTTCAGGCTGCTTTGGTAGCTGGAGAGGAAGTTTT GCTGAGTGACCATCCACTGATGTGGTGTTTGTCTTTCCTGCCGCTTTGGG TGTGCCGTTGCCGGTTGCCGGCTCCCGCGGGAGTTTGAGACCGTTTTTTC TGCGGCGCTTGCGGTGGCTGCTGCGCTTGCTGTGGCTGCTGCTACTGTTG CTGCTGCAAGCGCCGCAGAAAAAACGGTCTCAAACTCCCGCGGGAGCCAG CAACGGCACACCCAAAGCGGCAGGAAAGACAAATACCACATCGGGGGGGG CGCGAGTTTGGTTTGCTGCGGTTGGCATTCTTGCCTTGAGCAGCAGCGCG CGTCCTTTGAGAGCGAGGTCTGGTGTGGCGGTTTTTGTGGGTGGGCGATG GCCGGACGACTACTACTGTGTTGCTCGCTGTAAAGCAGATTGAGTGTGCG CCTCTCGCGACAGAGTAAAGATGGACTTGCCCTTGTAACCAGCAACGCGA CCCAAAAGGATGGAATGCCGTAGCAACCTGCACTGCGGCCCAAAACGGAA GGCCCCAAGGGGAGGGGGCCTCGACCGACAGGTGGAGTCGAGGGAGGGGG TCTCGAATGAGAAACCGAGTCAGCTCTCCGGCACATAAACGATGCGACCA ACACATGCAGCACAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10250:1664..5078+

>mRNA_S-firma_F_contig10250.385.1 ID=mRNA_S-firma_F_contig10250.385.1|Name=mRNA_S-firma_F_contig10250.385.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1494bp|location=Sequence derived from alignment at S-firma_F_contig10250:1664..5078+ (Sphaerotrichia firma ET2_F female)
ATGGGACTGCCGCGTGTGCTAGTGGACGTGAGCTTCGAGGGGCAGGGCCA
CAACGGGCAGGCGGCGAACCAGCTGGTGAAGGACTTGGTGGATGGGTTTC
CGGCTCTGAGGCCGCTGGCGCTGTTGCTGAAGCAGATGGGACTGCCGCGT
GTGCTAGTGGACGTGAGCTTCGAGGGGCAGGGCCACAACGGGCAGGCGGC
GAACCAGCTGGTGAAGGACTTGGTGGATGGGTTTCCGGCTCTGAGGCCGC
TGGCGCTGTTGCTGAAGCAGTTCATGATGGAGAAAGGTCTGTGCGTCAGC
TACACCGGAGGGCTGTCGTCGTACGCTCTCACGCTCATGGTGGCTAGTTC
ATGATGGAGAAAGGTCTGTGCGTCAGCTACACCGGAGGGCTGTCGTCGTA
CGCTCTCACGCTCATGGTGGCTAGGTACCTCCAGGAACAAACCGGCCAGA
TGGACTCGGGGTCGCTGCTGCTGGGCTTCCTCGACTTCTACGGCAACCAC
TTCGACCCCCGCCTCACCGGCATCAGCGTCGGACGCAGCCGCTACTTCTC
CCGGAGCGCGCCTTTGCCTCCCGTGCCCGCACCGCCCCAGGTGGCGCCGG
TTCCGGGGGCACCGAGTGCGGCGCGATTGTTCTACGGCCAGGTACCTCCA
GGAACAAACCGGCCAGATGGACTCGGGGTCGCTGCTGCTGGGCTTCCTCG
ACTTCTACGGCAACCACTTCGACCCCCGCCTCACCGGCATCAGCGTCGGA
CGCAGCCGCTACTTCTCCCGGAGCGCGCCTTTGCCTCCCGTGCCCGCACC
GCCCCAGGTGGCGCCGGTTCCGGGGGCACCGAGTGCGGCGCGATTGTTCT
ACGGCCAGAGAGGCCGACCTCCGTCCTTCCAGGGCGGGCTGGGAGGGGCG
GCACCTCCGGGAGCCCCGCCGGTCGCCGGAATCCCTGGTTGGGGTGACAT
GATGCGCATGCCTTATCGAGAGGCCGACCTCCGTCCTTCCAGGGCGGGCT
GGGAGGGGCGGCACCTCCGGGAGCCCCGCCGGTCGCCGGAATCCCTGGTT
GGGGTGACATGATGCGCATGCCTTATCGGTTCGACCCTCTCTTCATCGAG
GACCCCATGAACCTGAGCAACAATGTCGGCCGCAACTGCTTCCGGGTGTA
CCAGATCCAGAGGGCGTGGAGTGACGCCCACGCCTCGCTCACGCGCGCGT
TGGACGACGAGTCGCAGCTCCGGTCCAGCCCTTACCGCCTGCTGAGATGC
ATCATTTCTGACCCTGAACCCGCCCCCGACAGCTGAGTTCGACCCTCTCT
TCATCGAGGACCCCATGAACCTGAGCAACAATGTCGGCCGCAACTGCTTC
CGGGTGTACCAGATCCAGAGGGCGTGGAGTGACGCCCACGCCTCGCTCAC
GCGCGCGTTGGACGACGAGTCGCAGCTCCGGTCCAGCCCTTACCGCCTGC
TGAGATGCATCATTTCTGACCCTGAACCCGCCCCCGACAGCTGA
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