mRNA_S-firma_F_contig10240.372.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10240.372.1
Unique NamemRNA_S-firma_F_contig10240.372.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7S4P207_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P207_9EUKA)

HSP 1 Score: 196 bits (497), Expect = 7.620e-59
Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKTGYPPELHIKAYEAGLSGVIYPPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAY 375
            M   + FGNQIPFCEP+WYQG  +PYYT  HV FRARVREFVEKE+KPN+DKWIKTGYP  LH + Y+ GL  ++YP E GG +P DFDAFYE+IM+DEMAR GGGGVLGQ  INSMALPPI  +
Sbjct:    1 MPKFERFGNQIPFCEPAWYQGHHTPYYTEKHVQFRARVREFVEKEMKPNIDKWIKTGYPKSLHEEIYKTGLGAILYPKEYGGQRPDDFDAFYEVIMIDEMARCGGGGVLGQGGINSMALPPIMNF 125          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A0G4H0N0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H0N0_9ALVE)

HSP 1 Score: 183 bits (464), Expect = 8.110e-54
Identity = 84/121 (69.42%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   16 PFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKT--GYPPELHIKAYEAGLSGVIYPPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISA 372
            PFG+Q+P CEP WYQG  S YYT NHVAFR +VR+FVEKE+KP  D+WI+   GYP ELH KA++AG+ G+IYP ELGG +P DFDAFYELIM+DEMAR+GGG +LGQ+AINSMALPP+ A
Sbjct:    8 PFGSQLPHCEPYWYQGYPSAYYTENHVAFRKKVRDFVEKEMKPYADQWIRDPKGYPKELHQKAFDAGILGIIYPKELGGYRPPDFDAFYELIMLDEMARLGGGAILGQAAINSMALPPVVA 128          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7S2PUM4_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PUM4_9DINO)

HSP 1 Score: 171 bits (434), Expect = 2.060e-49
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   13 KPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKT--GYPPELHIKAYEAGLSGVIYPPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAYPP 381
            +PFG +I  CEP+WYQG  SPYY  +HV FR+ VR FVE+ELKP+VD WI    GYP ELH +AYE G+ GV+YP E GGT+P DFDAF+ELI+ DE+AR+GGGGVLGQ +INSMALPP+  + P
Sbjct:   10 EPFGTRIAHCEPAWYQGSSSPYYRDSHVQFRSLVRRFVEEELKPHVDDWIAAPGGYPRELHQRAYEVGVQGVLYPREWGGTRPDDFDAFHELILWDELARVGGGGVLGQMSINSMALPPVMDFGP 134          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: C5L2J1_PERM5 (Acyl-CoA_dh_N domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L2J1_PERM5)

HSP 1 Score: 124 bits (312), Expect = 5.920e-34
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWI-KTGYPPELHIKAYEAGLSGVIY--PPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAYPP 381
            M+  +PFG+Q  FCEPSWYQG F+PYYTA+H  FR RVR+FV KE+ P  + W+ K GYP  +H K Y+AGL   +   P EL  T   ++D F+E+I  DEMAR          +I+SMALPP+  Y P
Sbjct:    1 MARFEPFGDQHKFCEPSWYQGAFTPYYTASHAEFRKRVRDFVMKEIDPYAESWLEKGGYPLSIHKKMYDAGLQQAVLRVPSELSKTPSEEYDIFHEIIFFDEMAR--AECYPRMISIDSMALPPLVKYGP 128          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7S4M790_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M790_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 3.130e-33
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    4 SAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKTG-YPPELHIKAYEAGLSGVIYPPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAIN-SMALPPI 366
            S    +G++IPF EPSWY+G  SPYY  +H  FR  VR FVE E+ P   +W + G +PPELH KAY AG+ G I+P E GGT P DFDAF++LI++DE++R   GGVL        +ALPP+
Sbjct:   90 SPEDKYGSKIPFGEPSWYRGFKSPYYNESHAKFRETVRSFVETEIMPYTHEWDEAGTFPPELHEKAYRAGIYGAIWPEEYGGTPPKDFDAFHDLILIDELSRCAAGGVLWSCFFCFGIALPPV 212          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A813GTH4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GTH4_POLGL)

HSP 1 Score: 124 bits (311), Expect = 2.650e-31
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKTG--YPPELHIKAYEAGLSGVIYPPELGGTKPAD------FDAFYELIMVDEMARMGGGGVLGQSAINSMALPPI 366
            M+  + FG+Q P CEP WYQG  SPYYTA+H +FRA+ R F +KE++P ++ W+  G  YP  LH++A  AG+       ++    PA+      FDAF+ELIM+DE+A  G GG LGQ  INSMALPP+
Sbjct:    1 MAHAELFGDQTPGCEPRWYQGYPSPYYTASHTSFRAKCRAFCDKEIQPYLEGWLDRGEVYPASLHLRALAAGVPTAGLSRDVQSWYPAEIVPEGGFDAFHELIMLDEIAASGPGGQLGQMGINSMALPPV 130          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: C5LJ03_PERM5 (Acyl-CoA dehydrogenase, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LJ03_PERM5)

HSP 1 Score: 124 bits (310), Expect = 3.040e-31
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWI-KTGYPPELHIKAYEAGLSGVIY--PPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAYPP 381
            M+  +PFG+Q  FCEPSWYQG F+PYYTA+H  FR RVR+FV KE+ P  + W+ K GYP  +H K Y+AGL   +   P EL  T   ++D F+E+I  DEMAR          +I+SMALPP+  Y P
Sbjct:    1 MARFEPFGDQHKFCEPSWYQGAFTPYYTASHAEFRKRVRDFVMKEIDPYAESWLEKGGYPLSIHKKMYDAGLQQAVLRVPSELSKTPLEEYDIFHEIIFFDEMAR--AECYPRMISIDSMALPPLIKYGP 128          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7J6NBU5_PEROL (Isobutyryl-CoA dehydrogenase, mitochondrial n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NBU5_PEROL)

HSP 1 Score: 120 bits (301), Expect = 4.620e-30
Identity = 60/130 (46.15%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    1 MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKTG-YPPELHIKAYEAGLSGVIY--PPELGGTKPADFDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAYPP 381
            M+    FG+Q  FCEP+WYQG F+PYYTA+H  FR RVR+F+ KE++P  + W++ G YP  +H K Y+ GL   +   PPELGG    ++D F+E+I  DE+AR      +   +I+SMALPP+  Y P
Sbjct:    1 MTRFDSFGDQTKFCEPAWYQGAFTPYYTASHAEFRKRVRDFMAKEVEPYAEGWLQKGEYPLSVHKKMYDVGLQQAVLRVPPELGGASADEYDIFHEIIFFDEVARHECYPRM--ISIDSMALPPLVKYGP 128          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7S4VTS9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VTS9_9DINO)

HSP 1 Score: 120 bits (301), Expect = 9.470e-30
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   19 FGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKT--GYPPELHIKAYEAGLSGVIYPPELGGTKPAD------FDAFYELIMVDEMARMGGGGVLGQSAINSMALPPISAY 375
            FG Q+PFCEP WYQG  S YY  +H + R R R+FVE E+KP VD W+ +  GYP ELH+KA+ AGL        + G  PA+      +D+F+EL+ +DE+ R   G V GQ  INSMALPP+ A+
Sbjct:   26 FGEQLPFCEPYWYQGYPSAYYKDSHRSLRQRARDFVEAEVKPYVDDWLASPQGYPRELHVKAFAAGLPTAGLAQAVKGAYPAEVTPEGGWDSFHELVYLDELHRGSAGMVPGQLPINSMALPPLLAH 152          
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Match: A0A7S1SI26_9CHLO (Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SI26_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 1.390e-29
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   10 HKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNVDKWIKT-GYPPELHIKAYEAGLS----GVIYPPELGGTKPADFDAFYELIMVDEMARMGGGGVL-GQSAINSMALPPI 366
            H PFG+ IP+ +PSWY+G+F+PYYTA+HVA+RARVREFVE E+ PN  +W +    P E+  KA + GL     GV +P E  G  P  FD F+ELI++DE++R G GGV+ G     S+ LPPI
Sbjct:  256 HAPFGDLIPWGDPSWYRGEFTPYYTASHVAWRARVREFVELEIIPNAHEWDENKAMPKEIFRKAAQVGLLACTVGVPWPTEYAGPGPDGFDYFHELILIDELSRCGSGGVVWGLFGGLSIGLPPI 380          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10240.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4P207_9EUKA7.620e-5969.60Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0G4H0N0_9ALVE8.110e-5469.42Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2PUM4_9DINO2.060e-4964.00Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
C5L2J1_PERM55.920e-3449.23Acyl-CoA_dh_N domain-containing protein n=1 Tax=Pe... [more]
A0A7S4M790_9EUKA3.130e-3351.22Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A813GTH4_POLGL2.650e-3148.46Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
C5LJ03_PERM53.040e-3149.23Acyl-CoA dehydrogenase, putative n=1 Tax=Perkinsus... [more]
A0A7J6NBU5_PEROL4.620e-3046.15Isobutyryl-CoA dehydrogenase, mitochondrial n=1 Ta... [more]
A0A7S4VTS9_9DINO9.470e-3048.82Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1SI26_9CHLO1.390e-2951.20Hypothetical protein n=2 Tax=Eukaryota TaxID=2759 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10240contigS-firma_F_contig10240:62..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog227086.JGI_V11_128065
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,Cyt-b5
Max annot lvl2759|Eukaryota
Evalue2.1e-42
EggNOG OGsCOG1960@1|root,KOG0140@2759|Eukaryota
Descriptionmedium-chain-acyl-CoA dehydrogenase activity
COG categoryI
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.2205694-CDS-S-firma_F_contig10240:61..4421622815554.2205694-CDS-S-firma_F_contig10240:61..442Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10240 62..442 -
1696949411.7734036-CDS-S-firma_F_contig10240:61..4421696949411.7734036-CDS-S-firma_F_contig10240:61..442Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10240 62..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10240.372.1prot_S-firma_F_contig10240.372.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10240 62..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10240.372.1

>prot_S-firma_F_contig10240.372.1 ID=prot_S-firma_F_contig10240.372.1|Name=mRNA_S-firma_F_contig10240.372.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=127bp
MSAHKPFGNQIPFCEPSWYQGQFSPYYTANHVAFRARVREFVEKELKPNV
DKWIKTGYPPELHIKAYEAGLSGVIYPPELGGTKPADFDAFYELIMVDEM
ARMGGGGVLGQSAINSMALPPISAYPP
back to top

mRNA from alignment at S-firma_F_contig10240:62..442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10240.372.1 ID=mRNA_S-firma_F_contig10240.372.1|Name=mRNA_S-firma_F_contig10240.372.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=381bp|location=Sequence derived from alignment at S-firma_F_contig10240:62..442- (Sphaerotrichia firma ET2_F female)
ATGTCCGCCCACAAGCCGTTTGGCAACCAGATTCCCTTTTGCGAGCCCAG CTGGTACCAAGGCCAGTTCAGCCCGTACTACACCGCCAACCATGTCGCCT TTCGTGCCCGGGTGCGAGAGTTTGTGGAGAAGGAGCTGAAGCCGAACGTG GACAAGTGGATCAAGACGGGGTACCCGCCTGAGTTGCACATCAAGGCGTA CGAGGCGGGGCTGTCCGGCGTGATTTACCCGCCGGAGCTGGGGGGCACCA AGCCCGCCGACTTTGATGCATTCTACGAGTTGATCATGGTGGACGAGATG GCTCGCATGGGCGGCGGTGGTGTCCTCGGCCAATCCGCTATCAACTCCAT GGCATTGCCCCCCATCAGTGCGTACCCCCCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10240:62..442-

>mRNA_S-firma_F_contig10240.372.1 ID=mRNA_S-firma_F_contig10240.372.1|Name=mRNA_S-firma_F_contig10240.372.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=762bp|location=Sequence derived from alignment at S-firma_F_contig10240:62..442- (Sphaerotrichia firma ET2_F female)
ATGTCCGCCCACAAGCCGTTTGGCAACCAGATTCCCTTTTGCGAGCCCAG
CTGGTACCAAGGCCAGTTCAGCCCGTACTACACCGCCAACCATGTCGCCT
TTCGTGCCCGGGTGCGAGAGTTTGTGGAGAAGGAGCTGAAGCCGAACGTG
GACAAGTGGATCAAGACGGGGTACCCGCCTGAGTTGCACATCAAGGCGTA
CGAGGCGGGGCTGTCCGGCGTGATTTACCCGCCGGAGCTGGGGGGCACCA
AGCCCGCCGACTTTGATGCATTCTACGAGTTGATCATGGTGGACGAGATG
GCTCGCATGGGCGGCGGTGGTGTCCTCGGCCAATCCGCTATCAACTCCAT
GGCATTGCCCCCCATCAGTGCGTACCCCCCCATGTCCGCCCACAAGCCGT
TTGGCAACCAGATTCCCTTTTGCGAGCCCAGCTGGTACCAAGGCCAGTTC
AGCCCGTACTACACCGCCAACCATGTCGCCTTTCGTGCCCGGGTGCGAGA
GTTTGTGGAGAAGGAGCTGAAGCCGAACGTGGACAAGTGGATCAAGACGG
GGTACCCGCCTGAGTTGCACATCAAGGCGTACGAGGCGGGGCTGTCCGGC
GTGATTTACCCGCCGGAGCTGGGGGGCACCAAGCCCGCCGACTTTGATGC
ATTCTACGAGTTGATCATGGTGGACGAGATGGCTCGCATGGGCGGCGGTG
GTGTCCTCGGCCAATCCGCTATCAACTCCATGGCATTGCCCCCCATCAGT
GCGTACCCCCCC
back to top