mRNA_S-firma_F_contig1024.369.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1024.369.1
Unique NamemRNA_S-firma_F_contig1024.369.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1024.369.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.810e-22
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:  510 RWLRRGWLVMLRARHQAFLEQERQAPLTSRLWLLCGRRANDLCGITLATMENNPLCTAGGEAAASAR-VTDVELEQCEEGVSDLEFARAVVSVVGIVEEGLFRHIIMYL 833
            RW RRGWLVMLRARHQ FL Q +Q    S+ WL C R+  DLCGIT     ++PL TAG E +  A+ + D+EL   E+G  D EFA+AVVSV GI+EEG+FR I +YL
Sbjct:  145 RWKRRGWLVMLRARHQIFLAQLQQND--SQPWL-CKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELN--EQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1024.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK1_ECTSI1.810e-2255.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1024contigS-firma_F_contig1024:1872..6028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons6
Model size1176
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1024.369.1prot_S-firma_F_contig1024.369.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1024 2813..5688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.7857444-UTR-S-firma_F_contig1024:1871..19331622815553.7857444-UTR-S-firma_F_contig1024:1871..1933Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 1872..1933 +
1696949411.467496-UTR-S-firma_F_contig1024:1871..19331696949411.467496-UTR-S-firma_F_contig1024:1871..1933Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 1872..1933 +
1622815553.8002326-UTR-S-firma_F_contig1024:2782..28121622815553.8002326-UTR-S-firma_F_contig1024:2782..2812Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 2783..2812 +
1696949411.480612-UTR-S-firma_F_contig1024:2782..28121696949411.480612-UTR-S-firma_F_contig1024:2782..2812Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 2783..2812 +
1622815553.8848336-UTR-S-firma_F_contig1024:5688..60281622815553.8848336-UTR-S-firma_F_contig1024:5688..6028Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 5689..6028 +
1696949411.5456812-UTR-S-firma_F_contig1024:5688..60281696949411.5456812-UTR-S-firma_F_contig1024:5688..6028Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1024 5689..6028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.815058-CDS-S-firma_F_contig1024:2812..28991622815553.815058-CDS-S-firma_F_contig1024:2812..2899Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 2813..2899 +
1696949411.4890924-CDS-S-firma_F_contig1024:2812..28991696949411.4890924-CDS-S-firma_F_contig1024:2812..2899Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 2813..2899 +
1622815553.8278618-CDS-S-firma_F_contig1024:4103..41621622815553.8278618-CDS-S-firma_F_contig1024:4103..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4104..4162 +
1696949411.5007694-CDS-S-firma_F_contig1024:4103..41621696949411.5007694-CDS-S-firma_F_contig1024:4103..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4104..4162 +
1622815553.8451912-CDS-S-firma_F_contig1024:4597..46581622815553.8451912-CDS-S-firma_F_contig1024:4597..4658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4598..4658 +
1696949411.5136695-CDS-S-firma_F_contig1024:4597..46581696949411.5136695-CDS-S-firma_F_contig1024:4597..4658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4598..4658 +
1622815553.8602839-CDS-S-firma_F_contig1024:4960..50781622815553.8602839-CDS-S-firma_F_contig1024:4960..5078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4961..5078 +
1696949411.5255044-CDS-S-firma_F_contig1024:4960..50781696949411.5255044-CDS-S-firma_F_contig1024:4960..5078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 4961..5078 +
1622815553.8715658-CDS-S-firma_F_contig1024:5269..56881622815553.8715658-CDS-S-firma_F_contig1024:5269..5688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 5270..5688 +
1696949411.5359235-CDS-S-firma_F_contig1024:5269..56881696949411.5359235-CDS-S-firma_F_contig1024:5269..5688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1024 5270..5688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1024.369.1

>prot_S-firma_F_contig1024.369.1 ID=prot_S-firma_F_contig1024.369.1|Name=mRNA_S-firma_F_contig1024.369.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=248bp
MADCQGEQCDSGDDDGECGIFTSVCGVLLFVYILGFWVFSEVSLCWIFPR
LDLTLSARLSSIREVCIAQCLIVVFFPLICGAVWPVLVLFWLLYRVSCDV
YNCVVYTLEIPTRRAERVARQRLQAAIDYLRRCRPETKWRWLRRGWLVML
RARHQAFLEQERQAPLTSRLWLLCGRRANDLCGITLATMENNPLCTAGGE
AAASARVTDVELEQCEEGVSDLEFARAVVSVVGIVEEGLFRHIIMYL*
back to top

mRNA from alignment at S-firma_F_contig1024:1872..6028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1024.369.1 ID=mRNA_S-firma_F_contig1024.369.1|Name=mRNA_S-firma_F_contig1024.369.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4157bp|location=Sequence derived from alignment at S-firma_F_contig1024:1872..6028+ (Sphaerotrichia firma ET2_F female)
ACCGCGTACAAGGCTCGATGGCGGTTGGTTCGCCAGGAAACTCAACGCTA
CCGCATACGCAGGTGAATACCCAACGTATCCCTTTATCGAAGGAACGAAA
CTGTTTTATATTCTCCCAGCTGGCAGCGGAACAAACGGGATGTTAGTCTT
GACGCCGTCAGCCTCACGAACGATAACATCTCGATCCACATATCCACATT
TCCTGATGTGCCACATACCCGGCAATCCGATCACTTGTGCGAACTCACCT
CTCTCTAGACGAACCGCAGGTGTTGCGAAATGTACCTCAACTCAAAATGA
CCAGTTTCGTCTGTCCTATAATGTCTGGGCGTATGTGTGTGTGAACTCCC
GCATCTAGACTATCTATTTTGGTGGCAGCAGTCTCTCCGATCGAGGCGAG
ACGTGTACATCACTCTGCAGTGTATTCAGAGGACTACGCTTTGCAGCATA
TTTTTCTGTCCATCTACAACCAACCGAGGTCACACAGGAGGGGGCGAACA
ATGGGCCTCTTTGCTTGTTTTTACTTACATGTTTAGTTTTAATGCCCCAC
CTCCTCCTGCGGTCTTGCCAACATTTTCGCGAGAAGGGTTCTTCAGCCGT
CCCTTTCCCTCGTCGACAATGAAGCCGAATCTTATACGTGCGTAGAAACG
CCATGAGAGTACTTGCAGTACCTTCAGATTCAATCCAGCTGTTTAGCCAA
AGTGGAGAGGAGAATGCTATTCTTCCCATGTAAGCTCTTTGCGGGTGCTC
AGAATCGGTGGTGCTTGTAGTTGTGGCTTCGTGGAGTCCACCCACCAGAG
CAGGGAGTGATGAAGCAGAGAAATAGCCTAGAAACATGGGAATCCATTGG
GACGTTCCGCGACTCACAAACATACTTCGTGTGTCCTTTTCTGCTCTAAC
GTTCCGTACAGGTGGTGGGCGTCCATTCGTTGTAGCACCAAATGGCGGAT
TGCCAAGGGGAGCAATGTGATTCTGGAGATGATGATGGCGAATGCGGCAT
ATTCACATCAGTGTGCGGGGTACTCTTGGTGCGTTGACCTCGTGTTGTAC
CGACATATTGTTTCAGTAGAGAAAATATCAAGTGCAGTCTAAGCAGGCCC
TGTTCATCCGGGACGGTGGGCTGCGCACCTAATTTCGCGGGTATTATTTT
GATCAGTAATAGGAGAAAGTTTCAAATCGTTGGAAATCGTTGGAAACGCT
CGAAGTCGGGCAGAGCATCAAGCTTATAAGCCATAAGCCAGCTATGTACT
TCGTATCAATTCATCGCAGTGTCTACTTTAACGGCGACACCAACCTCGCT
GCGCTTTCGCAAGTTTTTAAGCATCGCACTTTGGTTGGGAAGCCTTTTCA
ACAGAGTTCTTTCGATTGTAACTGAATCGCCGCGGTTCGCTTTTTCGCGG
GTGTTTTTCCGCAAACCGCAAACCTGGTGCAGAGTCTATCTAAACGTATT
ATCCCTGGAGCAAGTACCCCTCCCTAGAAAAGTTTGCCCTCCCCCGACGC
GTTCTGTGTCTGTTTTCGATCACGTTCCCTCTGACCCGGGGGAGAGGTCA
CAGAACTGCTGTTTGTGTTCCACCAGCTTGCAAAGGTGTCGTTGCTGTCA
TTAATTTTTTTGCTTGGGCGCGTGTGTGAGTGTGGCAAAATACCTCCCAC
GCCGGGGGCTTCTCGCCCCGGGGTATTTTTATTTTTGTGGAAAGAGCATA
ACCCTACCTTTGAGAACTCGCCGGGGCGTTATATTTGGCACAAAAATATA
GATCACCCCCCGGGGCATTCGCACGGGGGATGCCACGCACGGTAGCACGA
AGCAGCTGGTTCTGTCGCCGCGCTTCATGTCGCTCAGGACATCTGTACGT
ATCGGTATTTGTCTGTTCTCTTCCTCCACCCCTTGGATGTATTCAACGTA
GATCTTGTACTCTGACTGTATCAACGAGGTCGTGTAGAAGCCATCAAGCA
GTAGGATGCATGGACAACCCGCAAGTGCGTCTAGTGCTTTCCGCGGCTGC
AAGCGTTTGTTTCTGGGGTCCGGTATCATCCTGCACGAACCTTTGCATCC
GAGGAGAACAGCCGTCATTGTTGCTGCACTCGCTACATACCGTCTGACTT
CGCGCGTCAACGTCCAACCCTACACGCACTCCTCTGCTTCGGCCGACAAC
AATGAGCGAGGCAAGGTTTTGTTGCGTGTTGACCTTAACTTGCGGGTTCG
TGCCGCCCTCGCTACGTTTGACGCTGTCACAGTTCGTGTACATCTTGGGG
TTCTGGGTGTTCTCCGAAGTGAGCTTGTGCTGGATTTTCCCGTGAGTGAT
CGCCACAAACCAGTCAAGCCCCCCTTAAACTTGCTGGCAAGTGTAGGCTA
GGAATTAGCGAAGAGATTGAACACGTGTGGGGCGGGCTCTTGATTCCGTG
CGGAGTTGTACGAGCTTTCCTGAGCCACAGCACAGGCACCGCGACGAACG
ATGAGGTCGACTGCTGTAAGTCTAGCTTCCAACGCGGTGGTCGGGCCCGG
CAGGAACCGTCAGCATTCGATAGTTTGCACGCAGTGAGTGAGTTGACTGG
GCCCTCTGGTCGTGAAGAGCCGTTTAGTTGTGTTCGGACCCGTACCCAAC
GCACGGGCAGCGCGCGGCGCACGTGTTCAATAGTGCGTCGTCACTCCAAC
AACAGCTTCCCCCCTGAAACTGCGTTGAACATCTTGCATGTGTTTGCCGT
CACCGCCGCACCGCCCCTCTTTGCAGTCGCCTCGACCTGACGTTGTCGGC
GCGCTTGTCCTCGATCCGAGAGGTCTGTATCGCACAGGTAAGGCCAGGTA
GAGAACGCAGAGCAGTTGTCTTAGCGATTTGGATGGGGCCAAGATAAGCC
ATTTCCGTCGACTGTCGGTATTTCTGAGCTGTGGTGTTTCAAGTTGTCGG
GGACGGGCTGGCCGAAAACTGCTGTGCAAGGCGGCGACGTAGCATCCCCG
TTCTTCACGGCCAGCCCCGCACATGTCCGTAAAAGGAATTGACAAGACTC
ATTGACTTTGTCGCATCTGCTCCTCAACCTTCTGCTGCATTCTTCCCGCG
TGCCCCTGCCTGTTGCCCTCTTCCCCGTGTGCTCTGCAGTGTCTCATCGT
AGTCTTCTTCCCGCTTATATGCGGAGCCGTCTGGCCGGTACTGGTTTTGT
TCTGGCTCCTCTACAGAGTCTCGTGCGATGTCTACAATTGTGTCGTCTAC
ACCCTTGGTGAGCTGTGAAAAGTTTGTGACTGTGGAATATCGCCCGTCAA
AAACGCTCTCCTCATGAGCTTGTTGCTTCAGCACTCATGTACAGTAGGGC
GAATATTTGTTGAGGCGTCAAAAAAAGCGAGAGAGAGCACACGGCGCAGT
GATCTTGATTGACCCGATCAGAATACCCGCTCTGCGCGATGTGTGCAGAG
ATACCGACGAGACGGGCGGAGAGGGTCGCCCGCCAACGGCTGCAAGCGGC
CATCGACTATCTCCGCCGTTGTCGGCCCGAGACCAAGTGGCGCTGGCTCC
GAAGGGGGTGGCTCGTCATGCTGCGAGCTCGTCACCAAGCCTTCTTGGAA
CAGGAACGACAGGCGCCTCTAACATCGAGGTTGTGGCTACTGTGCGGGCG
GAGAGCGAACGATCTGTGTGGTATCACGCTGGCGACGATGGAGAATAACC
CACTATGCACCGCAGGGGGTGAGGCTGCGGCAAGCGCGCGTGTTACCGAT
GTAGAGCTAGAGCAGTGCGAGGAAGGGGTTTCCGACCTGGAGTTCGCACG
GGCAGTGGTTTCGGTCGTTGGTATCGTGGAGGAGGGACTCTTCCGTCACA
TCATCATGTACCTCTAGGATGGTGGGCTTGAACTCGAATCGATTCGCCGT
ACTGTAGACTGTCCATAGAGCCGTAAAAGTTCTTAGGTGGGGATGGGCAT
CTGTCGCAGATTTGTTCGAGAGTTGCGTGAGACTTTCGCCTATGGAGGTG
ATTTCCCTGTCCAAACTACACGTACATTCCATACACAAACAGGCGACATT
CAGCTTCTTACTTTAATGCCATCACGCCGCGAGCATTGAATAGCTGCGAG
GTCCGACCAAATAATCCTACGTCCACAAATCGAGATTGATTGCGGTCCGC
CTAACGATCTTCCCTCCCGCGCGTGACATTGGCGGGGGTGCTAGCTTCTT
GTTCCCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1024:1872..6028+

>mRNA_S-firma_F_contig1024.369.1 ID=mRNA_S-firma_F_contig1024.369.1|Name=mRNA_S-firma_F_contig1024.369.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1488bp|location=Sequence derived from alignment at S-firma_F_contig1024:1872..6028+ (Sphaerotrichia firma ET2_F female)
ATGGCGGATTGCCAAGGGGAGCAATGTGATTCTGGAGATGATGATGGCGA
ATGCGGCATATTCACATCAGTGTGCGGGGTACTCTTGATGGCGGATTGCC
AAGGGGAGCAATGTGATTCTGGAGATGATGATGGCGAATGCGGCATATTC
ACATCAGTGTGCGGGGTACTCTTGTTCGTGTACATCTTGGGGTTCTGGGT
GTTCTCCGAAGTGAGCTTGTGCTGGATTTTCCCTTCGTGTACATCTTGGG
GTTCTGGGTGTTCTCCGAAGTGAGCTTGTGCTGGATTTTCCCTCGCCTCG
ACCTGACGTTGTCGGCGCGCTTGTCCTCGATCCGAGAGGTCTGTATCGCA
CAGTCGCCTCGACCTGACGTTGTCGGCGCGCTTGTCCTCGATCCGAGAGG
TCTGTATCGCACAGTGTCTCATCGTAGTCTTCTTCCCGCTTATATGCGGA
GCCGTCTGGCCGGTACTGGTTTTGTTCTGGCTCCTCTACAGAGTCTCGTG
CGATGTCTACAATTGTGTCGTCTACACCCTTGTGTCTCATCGTAGTCTTC
TTCCCGCTTATATGCGGAGCCGTCTGGCCGGTACTGGTTTTGTTCTGGCT
CCTCTACAGAGTCTCGTGCGATGTCTACAATTGTGTCGTCTACACCCTTG
AGATACCGACGAGACGGGCGGAGAGGGTCGCCCGCCAACGGCTGCAAGCG
GCCATCGACTATCTCCGCCGTTGTCGGCCCGAGACCAAGTGGCGCTGGCT
CCGAAGGGGGTGGCTCGTCATGCTGCGAGCTCGTCACCAAGCCTTCTTGG
AACAGGAACGACAGGCGCCTCTAACATCGAGGTTGTGGCTACTGTGCGGG
CGGAGAGCGAACGATCTGTGTGGTATCACGCTGGCGACGATGGAGAATAA
CCCACTATGCACCGCAGGGGGTGAGGCTGCGGCAAGCGCGCGTGTTACCG
ATGTAGAGCTAGAGCAGTGCGAGGAAGGGGTTTCCGACCTGGAGTTCGCA
CGGGCAGTGGTTTCGGTCGTTGGTATCGTGGAGGAGGGACTCTTCCGTCA
CATCATCATGTACCTCTAGAGATACCGACGAGACGGGCGGAGAGGGTCGC
CCGCCAACGGCTGCAAGCGGCCATCGACTATCTCCGCCGTTGTCGGCCCG
AGACCAAGTGGCGCTGGCTCCGAAGGGGGTGGCTCGTCATGCTGCGAGCT
CGTCACCAAGCCTTCTTGGAACAGGAACGACAGGCGCCTCTAACATCGAG
GTTGTGGCTACTGTGCGGGCGGAGAGCGAACGATCTGTGTGGTATCACGC
TGGCGACGATGGAGAATAACCCACTATGCACCGCAGGGGGTGAGGCTGCG
GCAAGCGCGCGTGTTACCGATGTAGAGCTAGAGCAGTGCGAGGAAGGGGT
TTCCGACCTGGAGTTCGCACGGGCAGTGGTTTCGGTCGTTGGTATCGTGG
AGGAGGGACTCTTCCGTCACATCATCATGTACCTCTAG
back to top