mRNA_S-firma_F_contig10238.367.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10238.367.1
Unique NamemRNA_S-firma_F_contig10238.367.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE)

HSP 1 Score: 613 bits (1581), Expect = 2.730e-207
Identity = 351/500 (70.20%), Postives = 397/500 (79.40%), Query Frame = 1
Query:  532 APPPSSAMDGLDPQEIEAFYAAQAEYGGDXXXXXXXXXXXPAAVDAQPGKKTGRGWRRGRNDVSKEDLSAMGLNYGDAEREPPGAKAGG-------FGKGRGKGKRGAVLGGRVSVDSMKLKYEEGWGAEAEGEGMLAAVRNAAGRSLSRVTSPSKAVSSMTPVAGVRLLARAGGLFPLLLWWAFSVTRGVLPVVMSWLVSRLMVQLANFSAGRYTLSPSHYRDSRRACYKLVGQQAAAGLSLAVAAGVVRGWLRPRAREASAALCRRALAGVSVAGGSDRPPAAEFRELSLAPWDYMRQMMEFSRAVAGVAAVAVVLHTVWPFRGPMALGGGATILIVLEGLSLWLAG-DSGPDETHG---DVAEE---LAGGMQGGAVASAEAEARGLRQVLLEKHSALLRAAE-DSGRNSRVLSTRTLLRGALAWLVMGAFAAYALVSVVDEELAYQFGTARVTLVITQVWLAHASLQAALSGLGQLTSLRPPAARMHAIALANPHN 1986
            AP   + M GLDP+EIEAFYAAQ EYG D           PAA DAQP K+ GRG RRG+ D+ KEDL+AMGLNYG+A+REP   ++         FG  +G   R  VLGGRVSVDSMKLKYEEGW  E EGEG+ AAV++ AGRS+SR+TSPSKAV+SMTPVA VRLLARAGG+ PLLLWWAFSV RGVLPVVMSWLVSRLM QLA+FSAGRYTLS S YR+ R AC+KL+GQQA AGLSLAVAAGVVRGWLRPRARE SAALCRRALAGVSVAGG D+PP +EFRELSLAPW YM+Q+ME SR VAGVAAV  VL TVWPFRGP+ LGGGAT+L++LEG+   LA  D G  E  G   DVAE    + GG  GGAVASAEAEARGLRQVLL K+SA+L AAE   GR SR+++TR+++RG++ WLVM AFA YALVSVV+EELA+QFGTARVTLVITQVWLA+ASLQ ALSGLGQ+  LRP AARM AIALA P N
Sbjct:  267 APAAGATMGGLDPREIEAFYAAQKEYGADSG---------PAAGDAQPRKRVGRG-RRGK-DIPKEDLTAMGLNYGEADREPVRERSPRRRGRRRWFGFAKGSRVRREVLGGRVSVDSMKLKYEEGWNVETEGEGVFAAVKSVAGRSISRMTSPSKAVTSMTPVACVRLLARAGGVIPLLLWWAFSVMRGVLPVVMSWLVSRLMHQLADFSAGRYTLSTSQYRECRSACFKLLGQQAGAGLSLAVAAGVVRGWLRPRARERSAALCRRALAGVSVAGGIDQPPPSEFRELSLAPWSYMQQVMELSRDVAGVAAVVAVLQTVWPFRGPVTLGGGATVLLLLEGIRTLLATEDPGAAEVRGSGSDVAEPSGGIPGGASGGAVASAEAEARGLRQVLLSKYSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMAAFAVYALVSVVEEELAFQFGTARVTLVITQVWLAYASLQGALSGLGQVARLRPTAARMQAIALAWPEN 755          
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI)

HSP 1 Score: 613 bits (1581), Expect = 2.200e-203
Identity = 345/501 (68.86%), Postives = 396/501 (79.04%), Query Frame = 1
Query:  532 APPPSSAMDGLDPQEIEAFYAAQAEYGGDXXXXXXXXXXXPAAVDAQPGKKTGRGWRRGRNDVSKEDLSAMGLNYGDAEREPPG-------AKAGGFGKGRGKGKRGAVLGGRVSVDSMKLKYEEGWGAEAEGEGMLAAVRNAAGRSLSRVTSPSKAVSSMTPVAGVRLLARAGGLFPLLLWWAFSVTRGVLPVVMSWLVSRLMVQLANFSAGRYTLSPSHYRDSRRACYKLVGQQAAAGLSLAVAAGVVRGWLRPRAREASAALCRRALAGVSVAGGSDRPPAAEFRELSLAPWDYMRQMMEFSRAVAGVAAVAVVLHTVWPFRGPMALGGGATILIVLEGLSLWLAG-DSGPDETHG---DVAEE---LAGGMQGGAVASAEAEARGLRQVLLEKHSALLRAAE-DSGRNSRVLSTRTLLRGALAWLVMGAFAAYALVSVVDEELAYQFGTARVTLVITQVWLAHASLQAALSGLGQLTSLRPPAARMHAIALANPHNG 1989
            AP   +AM GLDP+EIEAFYAAQ EYG D           PAA DAQP K+ G  W R   D+ KE+L+AMGLNYG+A+REP          ++G FG  +G   R  VLGGRVSVDSMKLKYEEGW  EAEGEG+ AAV++ AGRS+SR+TSPSKAV+SMTPVAGVRLLARAGG+FPLLLWWAFSV RGVLPVVMSWLVSRLM +LA+FSAGRYTLS SHYR+ R AC+KL+GQQA AGLSL VAAGVVRGWLRPRARE SAA+CRRALAGVSVAGG+DRPP +EFRELSLAPW YM+Q+ME SR VAGVAAV  VL TVWPFRGP+ LGGGA +L++LE +   L   D G  E  G   DVAE    + GG  GGAVA+AEAEARGLR+VLL K+SA+L AAE   GR SR+++TR+++RG++ WLVM AFA YALVSVV+EELA+QFGTARVTL+ITQVWLA+ASLQ ALSGLGQ+  LR  AARM AIALA P NG
Sbjct:  430 APAAGAAMGGLDPREIEAFYAAQKEYGADSG---------PAAGDAQPRKRMG--WGRRGKDIPKENLAAMGLNYGEADREPVRERSPRRRGRSGWFGFAKGSRGRREVLGGRVSVDSMKLKYEEGWNVEAEGEGVFAAVKSVAGRSISRMTSPSKAVTSMTPVAGVRLLARAGGVFPLLLWWAFSVMRGVLPVVMSWLVSRLMHRLADFSAGRYTLSTSHYRECRSACFKLLGQQAGAGLSLGVAAGVVRGWLRPRARERSAAVCRRALAGVSVAGGTDRPPPSEFRELSLAPWSYMQQVMELSRGVAGVAAVVAVLQTVWPFRGPVTLGGGAAVLLLLESIRTLLGTEDPGAAEVRGGGSDVAEPSGGIHGGASGGAVANAEAEARGLRKVLLSKNSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMSAFAVYALVSVVEEELAFQFGTARVTLLITQVWLAYASLQGALSGLGQVARLRSTAARMQAIALARPENG 919          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVL8_9PHAE2.730e-20770.20ABC transporter domain-containing protein n=1 Tax=... [more]
D7FXW6_ECTSI2.200e-20368.86ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10238contigS-firma_F_contig10238:22..5176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FXW6
PFAMsABC_membrane,ABC_tran
Max annot lvl2759|Eukaryota
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
Evalue3.61e-204
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
EC1.13.11.59
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons9
Model size1992
Cds size1992
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.528546-CDS-S-firma_F_contig10238:21..6881622815553.528546-CDS-S-firma_F_contig10238:21..688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 22..688 +
1696949411.3583639-CDS-S-firma_F_contig10238:21..6881696949411.3583639-CDS-S-firma_F_contig10238:21..688Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 22..688 +
1622815553.544286-CDS-S-firma_F_contig10238:1114..13501622815553.544286-CDS-S-firma_F_contig10238:1114..1350Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 1115..1350 +
1696949411.3696299-CDS-S-firma_F_contig10238:1114..13501696949411.3696299-CDS-S-firma_F_contig10238:1114..1350Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 1115..1350 +
1622815553.5581176-CDS-S-firma_F_contig10238:1848..20601622815553.5581176-CDS-S-firma_F_contig10238:1848..2060Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 1849..2060 +
1696949411.3791935-CDS-S-firma_F_contig10238:1848..20601696949411.3791935-CDS-S-firma_F_contig10238:1848..2060Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 1849..2060 +
1622815553.6148913-CDS-S-firma_F_contig10238:2461..26661622815553.6148913-CDS-S-firma_F_contig10238:2461..2666Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 2462..2666 +
1696949411.3896716-CDS-S-firma_F_contig10238:2461..26661696949411.3896716-CDS-S-firma_F_contig10238:2461..2666Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 2462..2666 +
1622815553.6261952-CDS-S-firma_F_contig10238:3002..31861622815553.6261952-CDS-S-firma_F_contig10238:3002..3186Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 3003..3186 +
1696949411.4006803-CDS-S-firma_F_contig10238:3002..31861696949411.4006803-CDS-S-firma_F_contig10238:3002..3186Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 3003..3186 +
1622815553.6374764-CDS-S-firma_F_contig10238:3567..36571622815553.6374764-CDS-S-firma_F_contig10238:3567..3657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 3568..3657 +
1696949411.4123032-CDS-S-firma_F_contig10238:3567..36571696949411.4123032-CDS-S-firma_F_contig10238:3567..3657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 3568..3657 +
1622815553.6537228-CDS-S-firma_F_contig10238:4065..41361622815553.6537228-CDS-S-firma_F_contig10238:4065..4136Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 4066..4136 +
1696949411.4228656-CDS-S-firma_F_contig10238:4065..41361696949411.4228656-CDS-S-firma_F_contig10238:4065..4136Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 4066..4136 +
1622815553.6750057-CDS-S-firma_F_contig10238:4581..47881622815553.6750057-CDS-S-firma_F_contig10238:4581..4788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 4582..4788 +
1696949411.4315927-CDS-S-firma_F_contig10238:4581..47881696949411.4315927-CDS-S-firma_F_contig10238:4581..4788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 4582..4788 +
1622815553.6885183-CDS-S-firma_F_contig10238:5056..51761622815553.6885183-CDS-S-firma_F_contig10238:5056..5176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 5057..5176 +
1696949411.448956-CDS-S-firma_F_contig10238:5056..51761696949411.448956-CDS-S-firma_F_contig10238:5056..5176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10238 5057..5176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10238.367.1prot_S-firma_F_contig10238.367.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10238 22..5176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10238.367.1

>prot_S-firma_F_contig10238.367.1 ID=prot_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=664bp
AGAADNAWNRAGTGGSASSGQGGGEWNGAPGAGGRGGTWPSTNVQPPPAS
DPASSSSMPPHQGLGGAAGAPASGQDPAYPPPPPPPSSSSQELPPLPGNG
GQGHGLARPWDAVPGGNGMDDDGGGVSGAPLPPIAEEAVTGPLPPPPPPL
PASSPPVESFPPPSGQERLGGSAGVGLAPPPSSAMDGLDPQEIEAFYAAQ
AEYGGDGGGGGGGGGGGPAAVDAQPGKKTGRGWRRGRNDVSKEDLSAMGL
NYGDAEREPPGAKAGGFGKGRGKGKRGAVLGGRVSVDSMKLKYEEGWGAE
AEGEGMLAAVRNAAGRSLSRVTSPSKAVSSMTPVAGVRLLARAGGLFPLL
LWWAFSVTRGVLPVVMSWLVSRLMVQLANFSAGRYTLSPSHYRDSRRACY
KLVGQQAAAGLSLAVAAGVVRGWLRPRAREASAALCRRALAGVSVAGGSD
RPPAAEFRELSLAPWDYMRQMMEFSRAVAGVAAVAVVLHTVWPFRGPMAL
GGGATILIVLEGLSLWLAGDSGPDETHGDVAEELAGGMQGGAVASAEAEA
RGLRQVLLEKHSALLRAAEDSGRNSRVLSTRTLLRGALAWLVMGAFAAYA
LVSVVDEELAYQFGTARVTLVITQVWLAHASLQAALSGLGQLTSLRPPAA
RMHAIALANPHNG*
back to top

mRNA from alignment at S-firma_F_contig10238:22..5176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10238.367.1 ID=mRNA_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5155bp|location=Sequence derived from alignment at S-firma_F_contig10238:22..5176+ (Sphaerotrichia firma ET2_F female)
GCCGGCGCTGCGGACAACGCCTGGAATCGGGCTGGGACGGGCGGGTCGGC GTCCTCAGGCCAAGGCGGAGGGGAGTGGAACGGTGCTCCCGGCGCGGGGG GTAGGGGGGGTACGTGGCCGTCGACGAATGTGCAACCCCCCCCCGCTTCT GACCCGGCGTCATCGTCATCCATGCCTCCGCATCAAGGTCTAGGCGGGGC TGCCGGGGCACCGGCGAGCGGTCAAGATCCTGCGTACCCGCCCCCTCCCC CCCCGCCGTCCTCCTCTTCCCAGGAGTTGCCCCCTTTGCCAGGGAACGGG GGCCAGGGGCACGGTCTGGCGCGGCCGTGGGATGCAGTGCCAGGTGGTAA TGGTATGGATGACGACGGTGGTGGTGTTAGCGGTGCGCCCCTTCCCCCAA TCGCCGAGGAAGCAGTGACGGGGCCGCTGCCGCCTCCGCCGCCGCCGCTG CCGGCCTCGTCGCCGCCTGTGGAAAGCTTTCCCCCACCGTCGGGACAGGA ACGTCTAGGCGGATCAGCGGGGGTGGGTTTAGCGCCCCCCCCGTCGTCTG CGATGGATGGGTTGGATCCGCAGGAGATTGAGGCGTTTTACGCGGCGCAG GCCGAGTACGGCGGCGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG GCCTGCTGCCGTCGATGGTGAGCCTGGTTCTGGTTAGCTGAGTCGACAGA GGTTGGCCGGTGTTCGTGCTTTTTTGAGAGTCGCACGAAACGGGCTCTGG TGACGTAAGCTGACGATGTGCGAGGCGAAGGCCGTCCCCAATGGTTTTGG TGGAAATGGTTGGGAGGGGCCATCGCGTGTCGGCGCGGTTGTGTTCGCGG TCGGATGTTTCTTGTCCGCGAGGCGTGTGGCTCGAGAAAGGCAGGCTTTG CTGCGGTTGTCTTGTCCTCCTTTCCTCCTCAAGAGCTAGGCTGGCGTTGA CGGCGCCTTTGCGGTGGTCGGTGAACTGGTGCGTGTGCTGCTCGCCGAGG ACACTCCAAGCGTCCAGGGGTTTACCTGCCTTATCTCTCACCCTGTCCTT CTCTTCTCTTCCCTTCCCTCTCTCTCGACGCCCCCCTCGCCAGCCCAACC GGGCAAGAAAACGGGCCGCGGGTGGAGACGTGGTCGCAACGACGTTTCGA AGGAGGACCTCAGCGCCATGGGTCTCAACTACGGCGACGCAGAGAGAGAG CCGCCCGGCGCAAAAGCGGGCGGGTTCGGGAAAGGGAGGGGCAAGGGCAA GCGAGGGGCCGTCTTGGGGGGCAGGGTGTCGGTGGACTCGATGAAGCTCA AGTACGAGGAGGGGTGGGGCGCGGAGGCGGTGAGTTTTTTGTCGCCGGCC AGCGCGGTTTTGCGCGCCTTGTGACGGCAGACGTTGTCGAATTCCAGCTG AGACACTGCCGCGGTTTGTGGACCTGCTGGGCTCGTTTGAAGGCCCAGGG TAACCCAGCATGCTGGTAGTAGTGTTCGTGGTGGGTGTTTTTTTATTGTT TCGTTTATTTTGCGCCTAAATTATAAAGCTCGTGTTTTCTGTAGTCGTGA GGTTGAGACTTCTCCGCTCGAAACGACCCGAATACAGTGTGACGCACACA GCCGCGAAGGAAGGACACGTGCCACCTTGCTATTGATAGGACGCTGCGCG CGCATCGTGTGGGGAAGACAGATGGCTCCAGGAAGTGTCGGCTGTGTCGC CTGCCGATCACAGCACCGTATCTGGTGGTGATACCTACCGCCCGAACGCA GTAGATGCCCTCGAGATGAACGCGAACAGAGGCCTTCCTTCTTCAACCAT CTTCCTCTTCGCCCCCTACACCCTCAGGAAGGAGAAGGCATGCTTGCTGC CGTCAGAAACGCCGCCGGGCGGTCCCTCTCGCGGGTGACGTCCCCCAGCA AGGCCGTTTCCTCCATGACCCCTGTGGCCGGGGTGAGGCTGCTGGCGAGA GCGGGCGGCCTCTTCCCGCTTCTGCTGTGGTGGGCGTTCTCCGTGACGAG GGGGGTGCTTCCGGTCGTCATGTCGTGGCTCGTGTCTAGGTAATTGTGAT GGATGCGGGGAGGGGTAAGAGGAGGGGAGGCTTATGGTTTGCACGTTCTT GGGATCTCGTAACGTAAATCTCCTGAGGAACAAACGTAGTTAACGTACAG AGTGGCAAATCGGCGTATTTTGCGGTTTGGCGGCCTCACGTTTTCGGCCC CGAAACCGCGTACCCCTCTTGTGAGTTGTTCCCGTGGCAATCCGGCAATC GGCGAGAACCACACCCCGCCTTGTCCTTCTGTTACACTGCCTCCTGTTGC CGCAGAACATAGGAGACCTGCTACAAGCGACCTGGCCGTCACACCAGCAG CTTGCATGCATACTGTAGGTGCCGTGCATGCGTCGCCGACGTTACTCCCC CTCCCCTCTTCCTGACTGACCCCTGCTTCGCCTCTATCAGACTGATGGTG CAGCTGGCCAATTTCTCGGCGGGGCGCTACACGTTGTCGCCGTCGCACTA CCGGGACAGCCGTCGCGCGTGCTACAAGCTGGTCGGCCAGCAGGCTGCGG CGGGGCTGTCGCTCGCGGTGGCTGCCGGGGTCGTGCGGGGCTGGCTTCGG CCGAGGGCTAGAGAGGCGTCGGCCGCCCTGTGCCGCCGCGCTTTGGTAAG ATGTACTGGTATTTAAGATAGTAGGATGCAAGATGCAAGATGGATTTGAT GTATTTTGGGGTTCGCTCGGTGTTGTGTTGCTACTGTATGTACGACTGGA CGCTTTTCCGTTTCTCCCTTCTCCCTCACGCTTGATTGCTGCCGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTATTGCTGTTCGATTG GCCCACAAACTCCTCTTCAAGACCGATGTTGAAACGTTAACGTTTGTACG TTCTTCTGGCCCATTTTGTGTCATCCGGCTGGCGACGTGCTTTGTTCACC CGAAACAATTAAACAATACTGCTGTAAACAGGCGGGCGTGTCGGTTGCCG GGGGCAGCGATCGCCCTCCCGCCGCGGAGTTCCGCGAGCTCAGCCTCGCC CCCTGGGACTACATGCGCCAAATGATGGAGTTCTCGAGGGCAGTGGCGGG GGTGGCAGCGGTGGCCGTGGTGCTGCACACAGTGTGGCCTTTCCGCGGAC CGATGGCGCTTGGGGGTAAGTAAGAATAACTCAAGTTGTGGCGACAGAGA AGGATGTGCTCCATACTGCTGTAGTTGTCTTCGTACAGTTTGCGTTTCCT TGCCCTCTCCGGTGCTGAGGACTAAGAGAGTCGATGGAAGGCGACGTCGA TCGATGTCCCCACGCGCGCACAACAGCCAGGCGCATTGTTGTGGCCCTTT TCTCGTACAAAGCAAGGCCGATGCGTTCATCTGCTTCCTCATCCCATGCT GGCCTTACTCTCTTCCCCCTCTTCCACGATCCCGTCACCAATGCCGTCAT CTTCACCGCATCGCCCATCCTGCCGTCTTTGCCACGCCCGTATGGATGTA TGTATGTCCATCGACATGTCGTAACACGGCTCCCCTTTGTGCGCAGGAGG CGCGACGATTCTCATTGTGCTGGAGGGCTTGAGCCTGTGGTTGGCTGGGG ACTCCGGCCCCGATGAGACCCATGGCGACGTTGCCGGTACGTGGCTTTTC TAGAGTCTCATGGCAGTGGCGCGGGCTCGTAGTCTTGAGGTGGACCAGAA CTCTCCTCCGAACGGAATGTCACGGCCGATTTACTCCGCAGCAGGAGGCT TGAAAAGCTCGTCGAGAAATGTGATTCTGGAGAGACCTTGAAGCACGTCC CCACCCCCCCTCTAGTGGACCTTGCTTCGTACCGTCTCGGTCACGGTGGA GAACGACAATCGGCTGTGAAGTTTAAGGTTTCGTTAACGCTAGGCGCGCG GATGGAGGTTTGTTGGTTGTGTCCAGACTACGACGATGTAGAAGTATCAT AACTGGCTTGGCGTTCCTTCTCGCTTTGTTATCACCCATCGCTTCCCCGT GCTGCTGCTGCTGCTGCTGCTACTTTCCTACTGGCCTTTTTCAGAGGAGT TGGCGGGGGGTATGCAAGGTGGAGCCGTCGCCAGCGCAGAGGCAGAAGCG CGCGGCCTGAGACAGGTAAGGAAGGGAAAAGTGAAGGATGCCGAACAAGT CAAGGCCATGAAGCCTTCTTGCTCTCCTCACTCTTGCTCGTGTGTGTTCC CGGTATTCCGTTGCGCCTGCGCCACGCTTGTGGCGCTTCGTTTCTCGTGA GCGTCGAAACGTTGAGGAGACTTGACCTTTTTTGTTTCTCTGTTCGCTCT TCGTTGGCCGTTGCCGTTGTTGTTGTTGTGTGCGTGTTGTGTTTTTTAAC GTCGTGCTTCGAACCCGAAGAAGAACACATCATTTCAACCATCTCGATAC GTTTTCTGCCGGCCTCGTCTCTCCTCGCCATCCATTTAGTGTACGGCATT GCTTGTTTTGTTGATTTGCCCTCTCGTCTGTCCGCGCCTGGCTGCTGCCG CGGTGGCTGTTGCTGCCGGCGTTTCCGTCGCGGTGAAAAATCACCTTGGC ATCGTGGCAGGTGCTGCTCGAGAAGCACTCAGCTCTGCTCAGAGCGGCCG AAGACTCCGGGCGGAACAGCAGGGTTCTGAGCACCCGCACCTTGCTGAGA GGGGCGCTGGCGTGGCTGGTCATGGGGGCTTTCGCGGCGTACGCCCTGGT GTCTGTCGTGGACGAGGAGCTGGCCTACCAGTTCGGCACAGCTAGGGTCA CCTTGGTCATAACCCAGGTACATAAGAAAGCAATACCAGAATTGGTTGAT TGGATGAAAATTGCAAGGTGGTGGTTGGAAGTAAGAACGACAGGGTGATG TGACTTGGCTCTCGCGCTGGCCCTTTCTTGGAGGTCCATACCCGCCCCTC GGCGCGAATCTCGCGTTCCGCACAGCAGCTACTTAAACAGGTCGAAGGCT GGCGGCACAGTCTCGTTTTCAGCAGTGGGGCCACTCACGCCTGTCTGCCC CGTTCCTTTCCTTGACCCCCCACCTTCTTCTTCAGGTGTGGCTAGCGCAC GCCAGCCTTCAGGCTGCTCTCAGCGGCCTGGGGCAGCTGACGAGCTTGCG GCCGCCCGCTGCCAGGATGCACGCAATTGCCCTCGCCAACCCGCACAACG GGTGA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10238:22..5176+

>mRNA_S-firma_F_contig10238.367.1 ID=mRNA_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3984bp|location=Sequence derived from alignment at S-firma_F_contig10238:22..5176+ (Sphaerotrichia firma ET2_F female)
GCCGGCGCTGCGGACAACGCCTGGAATCGGGCTGGGACGGGCGGGTCGGC
GTCCTCAGGCCAAGGCGGAGGGGAGTGGAACGGTGCTCCCGGCGCGGGGG
GTAGGGGGGGTACGTGGCCGTCGACGAATGTGCAACCCCCCCCCGCTTCT
GACCCGGCGTCATCGTCATCCATGCCTCCGCATCAAGGTCTAGGCGGGGC
TGCCGGGGCACCGGCGAGCGGTCAAGATCCTGCGTACCCGCCCCCTCCCC
CCCCGCCGTCCTCCTCTTCCCAGGAGTTGCCCCCTTTGCCAGGGAACGGG
GGCCAGGGGCACGGTCTGGCGCGGCCGTGGGATGCAGTGCCAGGTGGTAA
TGGTATGGATGACGACGGTGGTGGTGTTAGCGGTGCGCCCCTTCCCCCAA
TCGCCGAGGAAGCAGTGACGGGGCCGCTGCCGCCTCCGCCGCCGCCGCTG
CCGGCCTCGTCGCCGCCTGTGGAAAGCTTTCCCCCACCGTCGGGACAGGA
ACGTCTAGGCGGATCAGCGGGGGTGGGTTTAGCGCCCCCCCCGTCGTCTG
CGATGGATGGGTTGGATCCGCAGGAGATTGAGGCGTTTTACGCGGCGCAG
GCCGAGTACGGCGGCGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GCCTGCTGCCGTCGATGGCCGGCGCTGCGGACAACGCCTGGAATCGGGCT
GGGACGGGCGGGTCGGCGTCCTCAGGCCAAGGCGGAGGGGAGTGGAACGG
TGCTCCCGGCGCGGGGGGTAGGGGGGGTACGTGGCCGTCGACGAATGTGC
AACCCCCCCCCGCTTCTGACCCGGCGTCATCGTCATCCATGCCTCCGCAT
CAAGGTCTAGGCGGGGCTGCCGGGGCACCGGCGAGCGGTCAAGATCCTGC
GTACCCGCCCCCTCCCCCCCCGCCGTCCTCCTCTTCCCAGGAGTTGCCCC
CTTTGCCAGGGAACGGGGGCCAGGGGCACGGTCTGGCGCGGCCGTGGGAT
GCAGTGCCAGGTGGTAATGGTATGGATGACGACGGTGGTGGTGTTAGCGG
TGCGCCCCTTCCCCCAATCGCCGAGGAAGCAGTGACGGGGCCGCTGCCGC
CTCCGCCGCCGCCGCTGCCGGCCTCGTCGCCGCCTGTGGAAAGCTTTCCC
CCACCGTCGGGACAGGAACGTCTAGGCGGATCAGCGGGGGTGGGTTTAGC
GCCCCCCCCGTCGTCTGCGATGGATGGGTTGGATCCGCAGGAGATTGAGG
CGTTTTACGCGGCGCAGGCCGAGTACGGCGGCGACGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGGCCTGCTGCCGTCGATGCCCAACCGGGCAAGAA
AACGGGCCGCGGGTGGAGACGTGGTCGCAACGACGTTTCGAAGGAGGACC
TCAGCGCCATGGGTCTCAACTACGGCGACGCAGAGAGAGAGCCGCCCGGC
GCAAAAGCGGGCGGGTTCGGGAAAGGGAGGGGCAAGGGCAAGCGAGGGGC
CGTCTTGGGGGGCAGGGTGTCGGTGGACTCGATGAAGCTCAAGTACGAGG
AGGGGTGGGGCGCGGAGGCGCCCAACCGGGCAAGAAAACGGGCCGCGGGT
GGAGACGTGGTCGCAACGACGTTTCGAAGGAGGACCTCAGCGCCATGGGT
CTCAACTACGGCGACGCAGAGAGAGAGCCGCCCGGCGCAAAAGCGGGCGG
GTTCGGGAAAGGGAGGGGCAAGGGCAAGCGAGGGGCCGTCTTGGGGGGCA
GGGTGTCGGTGGACTCGATGAAGCTCAAGTACGAGGAGGGGTGGGGCGCG
GAGGCGGAAGGAGAAGGCATGCTTGCTGCCGTCAGAAACGCCGCCGGGCG
GTCCCTCTCGCGGGTGACGTCCCCCAGCAAGGCCGTTTCCTCCATGACCC
CTGTGGCCGGGGTGAGGCTGCTGGCGAGAGCGGGCGGCCTCTTCCCGCTT
CTGCTGTGGTGGGCGTTCTCCGTGACGAGGGGGGTGCTTCCGGTCGTCAT
GTCGTGGCTCGTGTCTAGGAAGGAGAAGGCATGCTTGCTGCCGTCAGAAA
CGCCGCCGGGCGGTCCCTCTCGCGGGTGACGTCCCCCAGCAAGGCCGTTT
CCTCCATGACCCCTGTGGCCGGGGTGAGGCTGCTGGCGAGAGCGGGCGGC
CTCTTCCCGCTTCTGCTGTGGTGGGCGTTCTCCGTGACGAGGGGGGTGCT
TCCGGTCGTCATGTCGTGGCTCGTGTCTAGACTGATGGTGCAGCTGGCCA
ATTTCTCGGCGGGGCGCTACACGTTGTCGCCGTCGCACTACCGGGACAGC
CGTCGCGCGTGCTACAAGCTGGTCGGCCAGCAGGCTGCGGCGGGGCTGTC
GCTCGCGGTGGCTGCCGGGGTCGTGCGGGGCTGGCTTCGGCCGAGGGCTA
GAGAGGCGTCGGCCGCCCTGTGCCGCCGCGCTTTGACTGATGGTGCAGCT
GGCCAATTTCTCGGCGGGGCGCTACACGTTGTCGCCGTCGCACTACCGGG
ACAGCCGTCGCGCGTGCTACAAGCTGGTCGGCCAGCAGGCTGCGGCGGGG
CTGTCGCTCGCGGTGGCTGCCGGGGTCGTGCGGGGCTGGCTTCGGCCGAG
GGCTAGAGAGGCGTCGGCCGCCCTGTGCCGCCGCGCTTTGGCGGGCGTGT
CGGTTGCCGGGGGCAGCGATCGCCCTCCCGCCGCGGAGTTCCGCGAGCTC
AGCCTCGCCCCCTGGGACTACATGCGCCAAATGATGGAGTTCTCGAGGGC
AGTGGCGGGGGTGGCAGCGGTGGCCGTGGTGCTGCACACAGTGTGGCCTT
TCCGCGGACCGATGGCGCTTGGGGGCGGGCGTGTCGGTTGCCGGGGGCAG
CGATCGCCCTCCCGCCGCGGAGTTCCGCGAGCTCAGCCTCGCCCCCTGGG
ACTACATGCGCCAAATGATGGAGTTCTCGAGGGCAGTGGCGGGGGTGGCA
GCGGTGGCCGTGGTGCTGCACACAGTGTGGCCTTTCCGCGGACCGATGGC
GCTTGGGGGAGGCGCGACGATTCTCATTGTGCTGGAGGGCTTGAGCCTGT
GGTTGGCTGGGGACTCCGGCCCCGATGAGACCCATGGCGACGTTGCCGGA
GGCGCGACGATTCTCATTGTGCTGGAGGGCTTGAGCCTGTGGTTGGCTGG
GGACTCCGGCCCCGATGAGACCCATGGCGACGTTGCCGAGGAGTTGGCGG
GGGGTATGCAAGGTGGAGCCGTCGCCAGCGCAGAGGCAGAAGCGCGCGGC
CTGAGACAGAGGAGTTGGCGGGGGGTATGCAAGGTGGAGCCGTCGCCAGC
GCAGAGGCAGAAGCGCGCGGCCTGAGACAGGTGCTGCTCGAGAAGCACTC
AGCTCTGCTCAGAGCGGCCGAAGACTCCGGGCGGAACAGCAGGGTTCTGA
GCACCCGCACCTTGCTGAGAGGGGCGCTGGCGTGGCTGGTCATGGGGGCT
TTCGCGGCGTACGCCCTGGTGTCTGTCGTGGACGAGGAGCTGGCCTACCA
GTTCGGCACAGCTAGGGTCACCTTGGTCATAACCCAGGTGCTGCTCGAGA
AGCACTCAGCTCTGCTCAGAGCGGCCGAAGACTCCGGGCGGAACAGCAGG
GTTCTGAGCACCCGCACCTTGCTGAGAGGGGCGCTGGCGTGGCTGGTCAT
GGGGGCTTTCGCGGCGTACGCCCTGGTGTCTGTCGTGGACGAGGAGCTGG
CCTACCAGTTCGGCACAGCTAGGGTCACCTTGGTCATAACCCAGGTGTGG
CTAGCGCACGCCAGCCTTCAGGCTGCTCTCAGCGGCCTGGGGCAGCTGAC
GAGCTTGCGGCCGCCCGCTGCCAGGATGCACGCAATTGCCCTCGCCAACC
CGCACAACGGGTGAGTGTGGCTAGCGCACGCCAGCCTTCAGGCTGCTCTC
AGCGGCCTGGGGCAGCTGACGAGCTTGCGGCCGCCCGCTGCCAGGATGCA
CGCAATTGCCCTCGCCAACCCGCACAACGGGTGA
back to top