mRNA_S-firma_F_contig10238.367.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE) HSP 1 Score: 613 bits (1581), Expect = 2.730e-207 Identity = 351/500 (70.20%), Postives = 397/500 (79.40%), Query Frame = 1
Query: 532 APPPSSAMDGLDPQEIEAFYAAQAEYGGDXXXXXXXXXXXPAAVDAQPGKKTGRGWRRGRNDVSKEDLSAMGLNYGDAEREPPGAKAGG-------FGKGRGKGKRGAVLGGRVSVDSMKLKYEEGWGAEAEGEGMLAAVRNAAGRSLSRVTSPSKAVSSMTPVAGVRLLARAGGLFPLLLWWAFSVTRGVLPVVMSWLVSRLMVQLANFSAGRYTLSPSHYRDSRRACYKLVGQQAAAGLSLAVAAGVVRGWLRPRAREASAALCRRALAGVSVAGGSDRPPAAEFRELSLAPWDYMRQMMEFSRAVAGVAAVAVVLHTVWPFRGPMALGGGATILIVLEGLSLWLAG-DSGPDETHG---DVAEE---LAGGMQGGAVASAEAEARGLRQVLLEKHSALLRAAE-DSGRNSRVLSTRTLLRGALAWLVMGAFAAYALVSVVDEELAYQFGTARVTLVITQVWLAHASLQAALSGLGQLTSLRPPAARMHAIALANPHN 1986
AP + M GLDP+EIEAFYAAQ EYG D PAA DAQP K+ GRG RRG+ D+ KEDL+AMGLNYG+A+REP ++ FG +G R VLGGRVSVDSMKLKYEEGW E EGEG+ AAV++ AGRS+SR+TSPSKAV+SMTPVA VRLLARAGG+ PLLLWWAFSV RGVLPVVMSWLVSRLM QLA+FSAGRYTLS S YR+ R AC+KL+GQQA AGLSLAVAAGVVRGWLRPRARE SAALCRRALAGVSVAGG D+PP +EFRELSLAPW YM+Q+ME SR VAGVAAV VL TVWPFRGP+ LGGGAT+L++LEG+ LA D G E G DVAE + GG GGAVASAEAEARGLRQVLL K+SA+L AAE GR SR+++TR+++RG++ WLVM AFA YALVSVV+EELA+QFGTARVTLVITQVWLA+ASLQ ALSGLGQ+ LRP AARM AIALA P N
Sbjct: 267 APAAGATMGGLDPREIEAFYAAQKEYGADSG---------PAAGDAQPRKRVGRG-RRGK-DIPKEDLTAMGLNYGEADREPVRERSPRRRGRRRWFGFAKGSRVRREVLGGRVSVDSMKLKYEEGWNVETEGEGVFAAVKSVAGRSISRMTSPSKAVTSMTPVACVRLLARAGGVIPLLLWWAFSVMRGVLPVVMSWLVSRLMHQLADFSAGRYTLSTSQYRECRSACFKLLGQQAGAGLSLAVAAGVVRGWLRPRARERSAALCRRALAGVSVAGGIDQPPPSEFRELSLAPWSYMQQVMELSRDVAGVAAVVAVLQTVWPFRGPVTLGGGATVLLLLEGIRTLLATEDPGAAEVRGSGSDVAEPSGGIPGGASGGAVASAEAEARGLRQVLLSKYSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMAAFAVYALVSVVEEELAFQFGTARVTLVITQVWLAYASLQGALSGLGQVARLRPTAARMQAIALAWPEN 755
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI) HSP 1 Score: 613 bits (1581), Expect = 2.200e-203 Identity = 345/501 (68.86%), Postives = 396/501 (79.04%), Query Frame = 1
Query: 532 APPPSSAMDGLDPQEIEAFYAAQAEYGGDXXXXXXXXXXXPAAVDAQPGKKTGRGWRRGRNDVSKEDLSAMGLNYGDAEREPPG-------AKAGGFGKGRGKGKRGAVLGGRVSVDSMKLKYEEGWGAEAEGEGMLAAVRNAAGRSLSRVTSPSKAVSSMTPVAGVRLLARAGGLFPLLLWWAFSVTRGVLPVVMSWLVSRLMVQLANFSAGRYTLSPSHYRDSRRACYKLVGQQAAAGLSLAVAAGVVRGWLRPRAREASAALCRRALAGVSVAGGSDRPPAAEFRELSLAPWDYMRQMMEFSRAVAGVAAVAVVLHTVWPFRGPMALGGGATILIVLEGLSLWLAG-DSGPDETHG---DVAEE---LAGGMQGGAVASAEAEARGLRQVLLEKHSALLRAAE-DSGRNSRVLSTRTLLRGALAWLVMGAFAAYALVSVVDEELAYQFGTARVTLVITQVWLAHASLQAALSGLGQLTSLRPPAARMHAIALANPHNG 1989
AP +AM GLDP+EIEAFYAAQ EYG D PAA DAQP K+ G W R D+ KE+L+AMGLNYG+A+REP ++G FG +G R VLGGRVSVDSMKLKYEEGW EAEGEG+ AAV++ AGRS+SR+TSPSKAV+SMTPVAGVRLLARAGG+FPLLLWWAFSV RGVLPVVMSWLVSRLM +LA+FSAGRYTLS SHYR+ R AC+KL+GQQA AGLSL VAAGVVRGWLRPRARE SAA+CRRALAGVSVAGG+DRPP +EFRELSLAPW YM+Q+ME SR VAGVAAV VL TVWPFRGP+ LGGGA +L++LE + L D G E G DVAE + GG GGAVA+AEAEARGLR+VLL K+SA+L AAE GR SR+++TR+++RG++ WLVM AFA YALVSVV+EELA+QFGTARVTL+ITQVWLA+ASLQ ALSGLGQ+ LR AARM AIALA P NG
Sbjct: 430 APAAGAAMGGLDPREIEAFYAAQKEYGADSG---------PAAGDAQPRKRMG--WGRRGKDIPKENLAAMGLNYGEADREPVRERSPRRRGRSGWFGFAKGSRGRREVLGGRVSVDSMKLKYEEGWNVEAEGEGVFAAVKSVAGRSISRMTSPSKAVTSMTPVAGVRLLARAGGVFPLLLWWAFSVMRGVLPVVMSWLVSRLMHRLADFSAGRYTLSTSHYRECRSACFKLLGQQAGAGLSLGVAAGVVRGWLRPRARERSAAVCRRALAGVSVAGGTDRPPPSEFRELSLAPWSYMQQVMELSRGVAGVAAVVAVLQTVWPFRGPVTLGGGAAVLLLLESIRTLLGTEDPGAAEVRGGGSDVAEPSGGIHGGASGGAVANAEAEARGLRKVLLSKNSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMSAFAVYALVSVVEEELAFQFGTARVTLLITQVWLAYASLQGALSGLGQVARLRSTAARMQAIALARPENG 919 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10238.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10238.367.1 >prot_S-firma_F_contig10238.367.1 ID=prot_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=664bp AGAADNAWNRAGTGGSASSGQGGGEWNGAPGAGGRGGTWPSTNVQPPPASback to top mRNA from alignment at S-firma_F_contig10238:22..5176+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10238.367.1 ID=mRNA_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5155bp|location=Sequence derived from alignment at S-firma_F_contig10238:22..5176+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10238:22..5176+ >mRNA_S-firma_F_contig10238.367.1 ID=mRNA_S-firma_F_contig10238.367.1|Name=mRNA_S-firma_F_contig10238.367.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3984bp|location=Sequence derived from alignment at S-firma_F_contig10238:22..5176+ (Sphaerotrichia firma ET2_F female)back to top |