mRNA_S-firma_F_contig10237.364.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A6H5KFI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI4_9PHAE) HSP 1 Score: 166 bits (421), Expect = 4.130e-45 Identity = 94/138 (68.12%), Postives = 99/138 (71.74%), Query Frame = 1
Query: 1 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREAEGXXXXXXXXXXXXXXXXXXXXXXFKKYQLPFDLSEGGGWSVPPEERSSGEEEDGGCG 414
AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAG+HAHLSRLE LRHLVVDEADRMLERGHYPEL+RLFSML KAEGR G + + PFD+SEGG WSVP EE EEED G G
Sbjct: 406 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGTHAHLSRLETLRHLVVDEADRMLERGHYPELSRLFSMLAKAEGRREGGDGGSSSKSRF--------------EEKFPFDVSEGGEWSVPQEE----EEEDSGEG 525
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A0D2M6Y2_9CHLO (DEAD-box ATP-dependent RNA helicase 13 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M6Y2_9CHLO) HSP 1 Score: 98.6 bits (244), Expect = 2.990e-21 Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWE-MAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREA 240
+VGG+A VKQ+R LSRRPEVVVATPGR W+ M+ HAHL+RL+ LR LV+DEADRM+++GHY EL+ + ++ + EA
Sbjct: 416 IVGGIAAVKQERLLSRRPEVVVATPGRLWDLMSQGHAHLTRLQRLRFLVIDEADRMVQQGHYQELSNILDLIPRPLDPEA 495
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A812AWJ0_SEPPH (RNA helicase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812AWJ0_SEPPH) HSP 1 Score: 96.3 bits (238), Expect = 1.870e-20 Identity = 41/75 (54.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 1 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEM-AGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
A+VGG++E KQ+R L R+PE++VATPGRFWE+ S+ H+S + +++HLV+DEADRM+E+GH+ EL++LF L++
Sbjct: 271 AIVGGMSEQKQERLLKRKPEIIVATPGRFWELFENSNPHISTVSHIKHLVIDEADRMIEKGHFEELHKLFEHLDE 345
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A2V0P9E8_9CHLO (DEAD-box ATP-dependent RNA helicase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9E8_9CHLO) HSP 1 Score: 95.9 bits (237), Expect = 2.630e-20 Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWE-MAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREAEG 246
+VGG+A VKQ+R L+RRPEVVVATPGR W+ M+ HAHL+RL LR LV+DEADRM+++GHY EL+ + ++ + + AEG
Sbjct: 429 IVGGIAAVKQERLLARRPEVVVATPGRLWDLMSSGHAHLTRLARLRVLVIDEADRMVQQGHYQELSSILDLIPRPS-KGAEG 509
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: UPI00085447FB (ATP-dependent RNA helicase DDX24 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI00085447FB) HSP 1 Score: 95.5 bits (236), Expect = 3.150e-20 Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSML 216
VVGG+A+ KQQR L+RRPE+V+ATPGR WEM H HLS L+ L LV+DEADRM+E+GHY EL +L ML
Sbjct: 132 VVGGMAQQKQQRLLNRRPEIVIATPGRLWEMISEKHPHLSNLQQLSCLVIDEADRMVEKGHYAELTQLLEML 203
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: Q7ZY84_XENLA (RNA helicase (Fragment) n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q7ZY84_XENLA) HSP 1 Score: 94.4 bits (233), Expect = 8.590e-20 Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
+VGG+A KQQR L RRPE+V+ATPGR WE+ G H HL L LR LV+DEADRM+E+GHY EL++L +L +
Sbjct: 372 IVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEADRMVEKGHYAELSQLLELLSE 445
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: Q6DDL4_XENLA (RNA helicase n=3 Tax=Xenopus laevis TaxID=8355 RepID=Q6DDL4_XENLA) HSP 1 Score: 94.4 bits (233), Expect = 8.680e-20 Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
+VGG+A KQQR L RRPE+V+ATPGR WE+ G H HL L LR LV+DEADRM+E+GHY EL++L +L +
Sbjct: 283 IVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEADRMVEKGHYAELSQLLELLSE 356
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: UPI001CFAE7BC (ATP-dependent RNA helicase DDX24 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFAE7BC) HSP 1 Score: 94.4 bits (233), Expect = 8.850e-20 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMA-GSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
VVGG+A KQ+R L+RRPE+V+ATPGR WE+ G H HLS L+ LR LV+DEADRM+E+GH+ EL+ L ML ++
Sbjct: 396 VVGGMAPQKQERVLNRRPEIVIATPGRLWELIKGGHPHLSYLKKLRCLVIDEADRMVEKGHFAELSELLEMLNDSK 471
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: G3W4Z2_SARHA (RNA helicase n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3W4Z2_SARHA) HSP 1 Score: 94.0 bits (232), Expect = 1.200e-19 Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
+VGG+A KQQR L+RRPE+V+ATPGR WE+ H HLS L LR LV+DEADRM+ERGH+ EL +L ML ++
Sbjct: 371 LVGGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSNLRQLRCLVIDEADRMVERGHFTELTQLLEMLNDSQ 446
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A250YLJ7_CASCN (RNA helicase n=3 Tax=Castor canadensis TaxID=51338 RepID=A0A250YLJ7_CASCN) HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMA-GSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
+VGG++ KQQR L+R PE+VVATPGR WE+ HAHLS L LR LVVDEADRM+E+GH+ EL++L ML ++
Sbjct: 421 LVGGMSTQKQQRMLNRHPEIVVATPGRLWELVKNKHAHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQ 496 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10237.364.1 >prot_S-firma_F_contig10237.364.1 ID=prot_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGSHAHLSRLENLRHLVVback to top mRNA from alignment at S-firma_F_contig10237:209..625+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10237.364.1 ID=mRNA_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=417bp|location=Sequence derived from alignment at S-firma_F_contig10237:209..625+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10237:209..625+ >mRNA_S-firma_F_contig10237.364.1 ID=mRNA_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig10237:209..625+ (Sphaerotrichia firma ET2_F female)back to top |