mRNA_S-firma_F_contig10237.364.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10237.364.1
Unique NamemRNA_S-firma_F_contig10237.364.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A6H5KFI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI4_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.130e-45
Identity = 94/138 (68.12%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREAEGXXXXXXXXXXXXXXXXXXXXXXFKKYQLPFDLSEGGGWSVPPEERSSGEEEDGGCG 414
            AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAG+HAHLSRLE LRHLVVDEADRMLERGHYPEL+RLFSML KAEGR   G                        + + PFD+SEGG WSVP EE    EEED G G
Sbjct:  406 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGTHAHLSRLETLRHLVVDEADRMLERGHYPELSRLFSMLAKAEGRREGGDGGSSSKSRF--------------EEKFPFDVSEGGEWSVPQEE----EEEDSGEG 525          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A0D2M6Y2_9CHLO (DEAD-box ATP-dependent RNA helicase 13 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M6Y2_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 2.990e-21
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWE-MAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREA 240
            +VGG+A VKQ+R LSRRPEVVVATPGR W+ M+  HAHL+RL+ LR LV+DEADRM+++GHY EL+ +  ++ +    EA
Sbjct:  416 IVGGIAAVKQERLLSRRPEVVVATPGRLWDLMSQGHAHLTRLQRLRFLVIDEADRMVQQGHYQELSNILDLIPRPLDPEA 495          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A812AWJ0_SEPPH (RNA helicase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812AWJ0_SEPPH)

HSP 1 Score: 96.3 bits (238), Expect = 1.870e-20
Identity = 41/75 (54.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEM-AGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
            A+VGG++E KQ+R L R+PE++VATPGRFWE+   S+ H+S + +++HLV+DEADRM+E+GH+ EL++LF  L++
Sbjct:  271 AIVGGMSEQKQERLLKRKPEIIVATPGRFWELFENSNPHISTVSHIKHLVIDEADRMIEKGHFEELHKLFEHLDE 345          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A2V0P9E8_9CHLO (DEAD-box ATP-dependent RNA helicase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9E8_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 2.630e-20
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWE-MAGSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAEGREAEG 246
            +VGG+A VKQ+R L+RRPEVVVATPGR W+ M+  HAHL+RL  LR LV+DEADRM+++GHY EL+ +  ++ +   + AEG
Sbjct:  429 IVGGIAAVKQERLLARRPEVVVATPGRLWDLMSSGHAHLTRLARLRVLVIDEADRMVQQGHYQELSSILDLIPRPS-KGAEG 509          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: UPI00085447FB (ATP-dependent RNA helicase DDX24 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI00085447FB)

HSP 1 Score: 95.5 bits (236), Expect = 3.150e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSML 216
            VVGG+A+ KQQR L+RRPE+V+ATPGR WEM    H HLS L+ L  LV+DEADRM+E+GHY EL +L  ML
Sbjct:  132 VVGGMAQQKQQRLLNRRPEIVIATPGRLWEMISEKHPHLSNLQQLSCLVIDEADRMVEKGHYAELTQLLEML 203          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: Q7ZY84_XENLA (RNA helicase (Fragment) n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q7ZY84_XENLA)

HSP 1 Score: 94.4 bits (233), Expect = 8.590e-20
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
            +VGG+A  KQQR L RRPE+V+ATPGR WE+ G  H HL  L  LR LV+DEADRM+E+GHY EL++L  +L +
Sbjct:  372 IVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEADRMVEKGHYAELSQLLELLSE 445          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: Q6DDL4_XENLA (RNA helicase n=3 Tax=Xenopus laevis TaxID=8355 RepID=Q6DDL4_XENLA)

HSP 1 Score: 94.4 bits (233), Expect = 8.680e-20
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEK 222
            +VGG+A  KQQR L RRPE+V+ATPGR WE+ G  H HL  L  LR LV+DEADRM+E+GHY EL++L  +L +
Sbjct:  283 IVGGMASQKQQRLLGRRPEIVIATPGRLWELIGERHPHLCNLRRLRCLVIDEADRMVEKGHYAELSQLLELLSE 356          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: UPI001CFAE7BC (ATP-dependent RNA helicase DDX24 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFAE7BC)

HSP 1 Score: 94.4 bits (233), Expect = 8.850e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMA-GSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
            VVGG+A  KQ+R L+RRPE+V+ATPGR WE+  G H HLS L+ LR LV+DEADRM+E+GH+ EL+ L  ML  ++
Sbjct:  396 VVGGMAPQKQERVLNRRPEIVIATPGRLWELIKGGHPHLSYLKKLRCLVIDEADRMVEKGHFAELSELLEMLNDSK 471          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: G3W4Z2_SARHA (RNA helicase n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3W4Z2_SARHA)

HSP 1 Score: 94.0 bits (232), Expect = 1.200e-19
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGS-HAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
            +VGG+A  KQQR L+RRPE+V+ATPGR WE+    H HLS L  LR LV+DEADRM+ERGH+ EL +L  ML  ++
Sbjct:  371 LVGGMAPQKQQRMLTRRPEIVIATPGRLWELIKEQHQHLSNLRQLRCLVIDEADRMVERGHFTELTQLLEMLNDSQ 446          
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Match: A0A250YLJ7_CASCN (RNA helicase n=3 Tax=Castor canadensis TaxID=51338 RepID=A0A250YLJ7_CASCN)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 VVGGLAEVKQQRQLSRRPEVVVATPGRFWEMA-GSHAHLSRLENLRHLVVDEADRMLERGHYPELNRLFSMLEKAE 228
            +VGG++  KQQR L+R PE+VVATPGR WE+    HAHLS L  LR LVVDEADRM+E+GH+ EL++L  ML  ++
Sbjct:  421 LVGGMSTQKQQRMLNRHPEIVVATPGRLWELVKNKHAHLSNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQ 496          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10237.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFI4_9PHAE4.130e-4568.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D2M6Y2_9CHLO2.990e-2158.75DEAD-box ATP-dependent RNA helicase 13 n=1 Tax=Mon... [more]
A0A812AWJ0_SEPPH1.870e-2054.67RNA helicase n=1 Tax=Sepia pharaonis TaxID=158019 ... [more]
A0A2V0P9E8_9CHLO2.630e-2057.32DEAD-box ATP-dependent RNA helicase n=1 Tax=Raphid... [more]
UPI00085447FB3.150e-2063.89ATP-dependent RNA helicase DDX24 n=1 Tax=Nanorana ... [more]
Q7ZY84_XENLA8.590e-2059.46RNA helicase (Fragment) n=1 Tax=Xenopus laevis Tax... [more]
Q6DDL4_XENLA8.680e-2059.46RNA helicase n=3 Tax=Xenopus laevis TaxID=8355 Rep... [more]
UPI001CFAE7BC8.850e-2059.21ATP-dependent RNA helicase DDX24 n=1 Tax=Protopter... [more]
G3W4Z2_SARHA1.200e-1959.21RNA helicase n=1 Tax=Sarcophilus harrisii TaxID=93... [more]
A0A250YLJ7_CASCN1.210e-1959.21RNA helicase n=3 Tax=Castor canadensis TaxID=51338... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10237contigS-firma_F_contig10237:209..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog9258.ENSOANP00000028233
Preferred nameDDX24
PFAMsDEAD,Helicase_C
Max annot lvl33208|Metazoa
KEGG koko:K14805
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Evalue2.69e-20
EggNOG OGsCOG0513@1|root,KOG0347@2759|Eukaryota,38CPC@33154|Opisthokonta,3BAA8@33208|Metazoa,3D0ZM@33213|Bilateria,486XD@7711|Chordata,48VAI@7742|Vertebrata,3J544@40674|Mammalia
EC3.6.4.13
Descriptionhelicase activity
COG categoryA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.3994255-CDS-S-firma_F_contig10237:208..6251622815553.3994255-CDS-S-firma_F_contig10237:208..625Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10237 209..625 +
1696949411.2574022-CDS-S-firma_F_contig10237:208..6251696949411.2574022-CDS-S-firma_F_contig10237:208..625Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10237 209..625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10237.364.1prot_S-firma_F_contig10237.364.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10237 209..625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10237.364.1

>prot_S-firma_F_contig10237.364.1 ID=prot_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=139bp
AVVGGLAEVKQQRQLSRRPEVVVATPGRFWEMAGSHAHLSRLENLRHLVV
DEADRMLERGHYPELNRLFSMLEKAEGREAEGGGGGGGSTGGGSTGGGGG
GRRRFKKYQLPFDLSEGGGWSVPPEERSSGEEEDGGCGD
back to top

mRNA from alignment at S-firma_F_contig10237:209..625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10237.364.1 ID=mRNA_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=417bp|location=Sequence derived from alignment at S-firma_F_contig10237:209..625+ (Sphaerotrichia firma ET2_F female)
GCCGTCGTCGGCGGGCTCGCGGAGGTGAAGCAGCAGCGCCAGCTGTCCCG GCGGCCGGAGGTGGTCGTCGCCACGCCCGGGAGGTTCTGGGAGATGGCCG GCTCCCACGCCCACCTGTCTCGCCTCGAGAACCTCCGCCACCTGGTGGTG GACGAGGCGGACCGGATGCTCGAGCGGGGACACTACCCCGAGCTCAACCG CCTGTTCTCGATGCTGGAGAAGGCGGAGGGCAGGGAGGCGGAAGGCGGCG GCGGCGGCGGCGGTAGCACCGGCGGTGGTAGCACCGGCGGCGGCGGCGGT GGCCGCCGCCGTTTCAAGAAGTACCAGCTGCCGTTCGACTTGAGCGAGGG GGGAGGGTGGAGCGTGCCGCCGGAGGAGCGCAGCAGCGGGGAAGAAGAGG ACGGGGGCTGTGGCGAC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10237:209..625+

>mRNA_S-firma_F_contig10237.364.1 ID=mRNA_S-firma_F_contig10237.364.1|Name=mRNA_S-firma_F_contig10237.364.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=834bp|location=Sequence derived from alignment at S-firma_F_contig10237:209..625+ (Sphaerotrichia firma ET2_F female)
GCCGTCGTCGGCGGGCTCGCGGAGGTGAAGCAGCAGCGCCAGCTGTCCCG
GCGGCCGGAGGTGGTCGTCGCCACGCCCGGGAGGTTCTGGGAGATGGCCG
GCTCCCACGCCCACCTGTCTCGCCTCGAGAACCTCCGCCACCTGGTGGTG
GACGAGGCGGACCGGATGCTCGAGCGGGGACACTACCCCGAGCTCAACCG
CCTGTTCTCGATGCTGGAGAAGGCGGAGGGCAGGGAGGCGGAAGGCGGCG
GCGGCGGCGGCGGTAGCACCGGCGGTGGTAGCACCGGCGGCGGCGGCGGT
GGCCGCCGCCGTTTCAAGAAGTACCAGCTGCCGTTCGACTTGAGCGAGGG
GGGAGGGTGGAGCGTGCCGCCGGAGGAGCGCAGCAGCGGGGAAGAAGAGG
ACGGGGGCTGTGGCGACGCCGTCGTCGGCGGGCTCGCGGAGGTGAAGCAG
CAGCGCCAGCTGTCCCGGCGGCCGGAGGTGGTCGTCGCCACGCCCGGGAG
GTTCTGGGAGATGGCCGGCTCCCACGCCCACCTGTCTCGCCTCGAGAACC
TCCGCCACCTGGTGGTGGACGAGGCGGACCGGATGCTCGAGCGGGGACAC
TACCCCGAGCTCAACCGCCTGTTCTCGATGCTGGAGAAGGCGGAGGGCAG
GGAGGCGGAAGGCGGCGGCGGCGGCGGCGGTAGCACCGGCGGTGGTAGCA
CCGGCGGCGGCGGCGGTGGCCGCCGCCGTTTCAAGAAGTACCAGCTGCCG
TTCGACTTGAGCGAGGGGGGAGGGTGGAGCGTGCCGCCGGAGGAGCGCAG
CAGCGGGGAAGAAGAGGACGGGGGCTGTGGCGAC
back to top